BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03930.1
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910061 jgi|Araly1|910061|Al_scaffold_0001_315 1554 0.0
Ahg494586 jgi|Araly1|494586|fgenesh2_kg.8__402__AT5G44100.1 1279 0.0
> Ahg910061 jgi|Araly1|910061|Al_scaffold_0001_315
Length=939
Score = 1554 bits (841), Expect = 0.0
Identities = 903/934 (97%), Gaps = 0/934 (0%)
Strand=Plus/Plus
Query 1153 TCACAGGCACATACCGTACAGAGAAAACAAAAACCTCACTGGAACAGCTCGGTATGCAAG 1212
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 6 TCACAGGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGAACAGCTCGGTATGCAAG 65
Query 1213 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAGCACTTGGTTA 125
Query 1273 TGTGCTGATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 1332
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TGTGCTTATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAGCTGGGACAAA 185
Query 1333 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAGCAACTCCTATAGAGGTCTTGTG 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 186 GAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAGCAACTCCTATAGAGGTATTGTG 245
Query 1393 TAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCTCTACGGTTTGA 1452
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 246 TAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCGCTACGGTTTGA 305
Query 1453 TGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAGG 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTTATTCGAGAAGG 365
Query 1513 TTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAGATTGGTTCCAG 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAGATTGGTTCCAG 425
Query 1573 CTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAACCCGGGCTTAACTGCAGG 1632
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 426 CTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAAACCGGGGTTAACTGCAGG 485
Query 1633 AGCTTCTCTCGAAAAACAGGAGAGGATTGCTGGAAAGGAGACTCGCGAGAACCGGTTCTC 1692
| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 486 ACCTTCTCTCGAAAAACCGGAGAGGATTGCTGGAAAGGATACTCGGGAGAACCGGTTCTC 545
Query 1693 GGGTGCAGTAGAGGCTTTCTCAAGAAGGCATCCGGCAACTTCTACTACTCGTGATCGCTC 1752
||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 546 GGGTGCAGTTGAGGCTTTCTCAAGAAGGCATCCGACAACTTCTACTCCGCGTGATCGCTC 605
Query 1753 GGCATCAAGAAACTCCGTTGATGGGCCTTTGTCTAAGCATCCGCCTGGTGACTCAGAAAG 1812
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGCATCAAGAAACTCTGATGATGGGCCTTTGTCTAAGCATCCGCCTGGTGACTCAGAAAG 665
Query 1813 ACCACGCAGTTCCTCAAGATATGGAAGCTCTTCGAGGAGAGCAATTCCGTCAAGCTCTCG 1872
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 666 ACCACGCAGTTCCTCAAGATATGGAAGCTCTTCGAGGAGAGCAGTTGCGTCAAGCTCTCG 725
Query 1873 ACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGCCGTCTGGTGACATCAAC 1932
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 726 ACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATCCTCTAGCCGTCTGGTAACTTCAAC 785
Query 1933 TGGAGGAGTCGGAACAGTAAGTAACCGCGCATCAACAAGCCAGAGAATCCAAGCAGGAAA 1992
||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 786 TGGAGGAGTCGGAACAGTAAGCAACCGTGCATCAACAAGCCAGAGAATCCAATCAGGAAA 845
Query 1993 CGAATCCAGGACGTCGTCTTTTTCGCGTGCTGCTAGAAACACTCGAGAAGATCCATTAAG 2052
|||||||| ||| ||||||||||||||||| || ||||||||| |||||||||||||| |
Sbjct 846 CGAATCCAAGACATCGTCTTTTTCGCGTGCAGCAAGAAACACTAGAGAAGATCCATTACG 905
Query 2053 GAGGAGCTTAGAGCTTCTCACTCTCAGAAAATGA 2086
||||||||||||||||||| ||||||||||||||
Sbjct 906 GAGGAGCTTAGAGCTTCTCTCTCTCAGAAAATGA 939
> Ahg494586 jgi|Araly1|494586|fgenesh2_kg.8__402__AT5G44100.1
Length=2172
Score = 1279 bits (692), Expect = 0.0
Identities = 1208/1451 (83%), Gaps = 60/1451 (4%)
Strand=Plus/Plus
Query 664 AGAAAATATGGATCTTGTGATTGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGTAGTGG 723
||| || ||||||||||| || ||||| |||||||||||||| |||||||||||||||||
Sbjct 412 AGAGAAGATGGATCTTGTAATCGGTGGGAAATTTAAGCTTGGAAGGAAAATTGGTAGTGG 471
Query 724 TTCCTTTGGAGAGCTTTATCTAGGTATAAATGTTCAAACCGGAGAAGAAGTTGCTGTCAA 783
|| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 472 ATCATTTGGAGAGCTTTATCTAGGTGTAAATGTCCAAACAGGAGAAGAAGTTGCTGTCAA 531
Query 784 GCTGGAATCTGTGAAAACTAAGCATCCCCAACTCCACTATGAGTCGAAGTTGTATATGCT 843
| ||||| |||||| || |||||||| ||||| || |||||||| ||||||||||||||
Sbjct 532 GTTGGAAAATGTGAAGACCAAGCATCCACAACTTCATTATGAGTCAAAGTTGTATATGCT 591
Query 844 GCTTCAAGGAGGAACTGGTGTTCCTAACCTCAAGTGGTATGGAGTTGAAGGGGATTACAA 903
||||||||||||| ||||| |||| ||||||||||||| |||||||||||| |||||||
Sbjct 592 GCTTCAAGGAGGATCTGGTATTCCGAACCTCAAGTGGTTTGGAGTTGAAGGTGATTACAG 651
Query 904 TGTAATGGTTATTGACCTTCTAGGTCCTAGTCTTGAAGACTTGTTTAACTACTGTAATAG 963
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 652 CGTAATGGTTATTGACCTTCTAGGTCCTAGTCTTGAAGACTTGTTTAACTATTGCAACAG 711
Query 964 AAAACTCTCTTTAAAAACCGTTCTCATGCTTGCGGACCAGCTGA-TTAACAGAGTCGAGT 1022
|| || | || ||||| |||||||||||||| ||||| | | ||||||| || ||||
Sbjct 712 GAAGTTCACATTGAAAACGGTTCTCATGCTTGCCGACCAATT-ACTTAACAGGGTTGAGT 770
Query 1023 TTATGCATACTAGAGGTTTTCTTCACCGTGATATTAAACCTGACAACTTCTTAATGGGCC 1082
|||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 771 ATATGCATACTCGAGGTTTCCTTCACCGTGATATAAAACCTGACAACTTTTTAATGGGAC 830
Query 1083 TTGGTCGCAAAGCAAATCAGGTTTATATCATTGATTTTGGATTGGGGAAGAAATACAGAG 1142
|||| ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||
Sbjct 831 TTGGACGCAAAGCAAATCAGGTGTATATCATTGATTTCGGACTAGGGAAGAAATACAGAG 890
Query 1143 ACCTTCAGACTCACAGGCACATACCGTACAGAGAAAACAAAAACCTCACTGGAACAGCTC 1202
||||||||||||||| |||||| |||||||||||||||||||| |||||||| || ||||
Sbjct 891 ACCTTCAGACTCACAAGCACATTCCGTACAGAGAAAACAAAAATCTCACTGGGACTGCTC 950
Query 1203 GGTATGCAAGTGTGAACACTCACCTTGGAGTCGAACAAAGTCGAAGAGATGATTTGGAAG 1262
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 951 GGTATGCAAGTGTCAACACTCACCTTGGAGTCGAACAAAGTCGAAGGGATGATTTGGAAT 1010
Query 1263 CACTTGGTTATGTGCTGATGTATTTCCTCAAAGGGAGCTTACCCTGGCAGGGATTAAAAG 1322
||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1011 CACTTGGTTATGTTCTTATGTATTTTCTCAAAGGAAGCTTACCATGGCAGGGATTAAAAG 1070
Query 1323 CTGGGACAAAGAAGCAGAAGTATGACAGAATTAGTGAGAAAAAAGTAG-CAACTCCTATA 1381
||||||||||||||||||||||||||||||| || ||||| ||||| | |||||||||||
Sbjct 1071 CTGGGACAAAGAAGCAGAAGTATGACAGAATCAGCGAGAAGAAAGT-GTCAACTCCTATA 1129
Query 1382 GAGGTCTTGTGTAAAAATCAACCGTCTGAGTTTGTTTCGTACTTTCGTTACTGCCGGTCT 1441
||||| ||||||||||| || |||||||| || ||||| ||||||| ||||||||| |||
Sbjct 1130 GAGGTGTTGTGTAAAAACCACCCGTCTGAATTCGTTTCATACTTTCATTACTGCCGATCT 1189
Query 1442 CTACGGTTTGATGACAAACCTGATTACTCTTACCTTAAGAGGCTATTCCGCGACTTGTTT 1501
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1190 TTACGGTTTGATGACAAACCTGATTACTCTTACCTCAAGAGGCTCTTCCGTGACTTGTTC 1249
Query 1502 ATTCGAGAAGGTTATCAGTTTGATTATGTATTTGACTGGACAGTTCTGAAGTATCCTCAG 1561
|| |||||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct 1250 ATCCGAGAAGGTTATCAATTCGATTATGTATTTGACTGGACAGTCCTAAAGTATCCTCAA 1309
Query 1562 ATTGGTTCCAGCTCTGGTTCTAGTTCACGGACACGGAATCATACAACTGCAAACCCGGGC 1621
|| || |||||||||||||||||||| ||| || |||||||||| || | |
Sbjct 1310 ATCGGAAGTAGCTCTGGTTCTAGTTCACGAACAAGGCATCATACAAC---AA-C--GA-- 1361
Query 1622 TTAACTGCAGGAGCTTCTCTCGAAAAACAGGAGAGGATTGCTGGAAAGGAGACT-CGCG- 1679
||| ||| | | || |||||| ||| |||||||| | |||||||| || | ||
Sbjct 1362 --AAC--CAG-ATC--CTATCGAAAGACAAGAGAGGATCCCAGGAAAGGAAACAACCCGT 1414
Query 1680 -AGAACCGGTTCTCGGGTGCAGTAGAGGCTTTCTCAAGAAGGCATCCGGC-A-A-CTTCT 1735
| || | | | |||||||| ||||| ||||| |||| || ||| | | | |||||
Sbjct 1415 TATAAAA--TCC-CAGGTGCAGTGGAGGCATTCTCCCGAAGACACCCGACTACAACTTCT 1471
Query 1736 ACTACTCGTGATCGCTCG-GCATCAAGAAACTCCGTTGATGGGCCTTTGTCTAAGCATCC 1794
|| | |||||||| || | |||||||||||| | ||| || ||||| |||||||| |
Sbjct 1472 ACGCCACGTGATCGTTCCAG-ATCAAGAAACTCAGATGACGGACCTTTCTCTAAGCAGAC 1530
Query 1795 GCCTGGTGACTCAGAAAGACCACGCAGTTCCTCAAGATATGGA--AGCT-CTTCGAGGAG 1851
| ||| ||||| |||||| || ||||||||||||||| || | || |||| ||||
Sbjct 1531 ACATGGAGACTCCGAAAGAGCAAACAGTTCCTCAAGATACAGAGCATCTTCTTCAAGGAA 1590
Query 1852 AGCAATTCC-G-T-CAAGCTCTCGACCAAGTTCCGCAGGTGGACCAAGCGATAGTCGATC 1908
||| || | | | ||||||| || |||||||| ||||||||||||||||| || ||| |
Sbjct 1591 AGCCGTTGCTGCTTCAAGCTCCCGGCCAAGTTCTGCAGGTGGACCAAGCGAAAGCCGAGC 1650
Query 1909 CTCTAGCCGTCTGGTGACATCAA-CTGGAGGAG-TCGGAA-CAGTAAGT---AA---CCG 1959
|| || |||||||| | |||| | || || | | || | | | | || || |||
Sbjct 1651 TTCAAGTCGTCTGGTTTCCTCAAGC-GGCGGTGGT-GGCAGCGGCA-GTGGCAATGGCCG 1707
Query 1960 -CGCATCAACAAGCCAGAGAATCCAAGCAGGAAACGAATCCAGGACGTCGTCTTTTTCGC 2018
| | || || ||||||||| ||||||| ||| | ||||||| ||| | |||||| || |
Sbjct 1708 TCCC-TCGACTAGCCAGAGAGTCCAAGCTGGATATGAATCCAAGACTTTGTCTTTCTCTC 1766
Query 2019 GTGCT--G-CT--A-GAAACACTCGAGAAGATCCATTAAGGAGGAGCTTAGAGCTTCTCA 2072
|||| | || | |||||||| | ||||||| ||| || | ||||| |||||||||
Sbjct 1767 GTGCAACGGCTTCAAGAAACACTAGGGAAGATCAATTGAG-A--AGCTTCGAGCTTCTCT 1823
Query 2073 CTCT-CAGAAA 2082
|||| | ||||
Sbjct 1824 CTCTTCGGAAA 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88064646440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5