BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03940.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470369 jgi|Araly1|470369|fgenesh2_kg.1__323__AT1G03495.1 2163 0.0
Ahg919016 jgi|Araly1|919016|scaffold_100297.1 1840 0.0
> Ahg470369 jgi|Araly1|470369|fgenesh2_kg.1__323__AT1G03495.1
Length=1623
Score = 2163 bits (1171), Expect = 0.0
Identities = 1394/1501 (93%), Gaps = 18/1501 (1%)
Strand=Plus/Plus
Query 17 AGAATCAACTTCTTCACTTGCCCGGTGGTTTCATTTTCCTTTTATAAAAAGACAAAT-AT 75
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||
Sbjct 97 AGAATCAACTTCTTCACTTGCCCGGTGGTTTCATTTACCTTTTATAAAAAGAGAACTAAT 156
Query 76 GAACTCAGTTCCTCAAAACTTAATCACACCATGGTGGCTCATCTTCAACCTCCTAAGATC 135
||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 157 GAACTCATTTCCTCAAAACTTAATCACACCA---TGGCTCATCCTCAACCTCCTAACATC 213
Query 136 ATCGAGACCTGTCACATCTCTCCCCCAAAGGGCACCGTTCCATCAACCActcttcctctc 195
|||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 214 ATCGAGACCTGTCATATCTCTCCCACAACCGGCACCGTTCCATCCACCACTCTTCCTCTC 273
Query 196 accttcttcgatgccccctggctctctctcccactcgccgattctctcttcttcttctct 255
|||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 274 ACCTTCTTTGATGCCCCGTGGCTCACTCTCCCACTCGCCGATTCTCTCTTCTTCTTTTCT 333
Query 256 tACCAAAACTCAACTGAATCTTTCCTCCAAGACTTTGTACCCAACCTCAAACATTCCCTC 315
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||
Sbjct 334 TACCAAAACTCAACTGAATCTTTCCTCAAAGATTTTGTACCCAACCTTAAACAATCACTC 393
Query 316 TCCATCACTCTCCAACATTTCTTCCCTTACGCCGGTAAACTGATTATCCCGCCTCGTCCC 375
|||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 394 TCCATCTCTCTCCAGCATTTCTTCCCTTACGCCGGTAAACTGATCATCCCGTCTCGTCCC 453
Query 376 GACCCTCCATATTTACACTACAACGATGGCCAAGACTCTCTTGTTTTCACCGTAGCAGAG 435
||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 454 GACCCTCCATACTTACAGTACAACGATGGCAAAGACTCTCTTGTTTTCACTGTAGCAGAG 513
Query 436 TCTACTGAAACCGACTTCGACCAACTGAAGTCTGATTCCCCTAAAGATATCAGTGTGTTG 495
|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 514 TCTACTGAAACCGACTTCAACCAACTGAAAACTGATTCCCCTAAAGATATCAGGGTGTTG 573
Query 496 CATGGCGTCTTGCCCAAGTTACCTCCTCCTCACGTCTCTCCGGAAGGAATTCAGATGCGA 555
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 574 CATGGCGTCTTGCCCAAGTTACCTCCTCCTCATGTCTCTCCGGAAGGAATTCAGATGCGG 633
Query 556 CCAATAATGGCTATGCAAGTCACCATCTTCCCTGGAGCTGGAATCTGTATAGGCAACTCA 615
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 634 CCAATAATGGCGATGCAAGTCACCATCTTCCCTGGAGCCGGAATCTGTATAGGCAACTCA 693
Query 616 GCTACACATGTTGTAGCAGATGGAGTCACCTTCAGTCATTTCATGAAGTATTGGATGTCA 675
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 694 GCTACACATGTTGTAGCGGATGGAGTCACCTTCAGTCACTTCATGAAGTATTGGATGTCA 753
Query 676 TTGACCAAATCCAGCGGTAAAGATCCCGCCACGGTTCTTCTACCCTCTCTGCCTATTCAC 735
|||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 754 CTGACCAAATCCAACGGCAAAGATCCTGCCACGGTTCTTCTACCCCCTCTGCCTATTCAC 813
Query 736 AGCTGCAGAAACATGATCAAGGACCCAGGCGAGGTAGGCGCAGGACATTTGGAGCGGTTT 795
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 814 AGCTGCAGAAACATGATCAAGGACCCAGGAGAGGTAGGCGCAGGACATTTGGAGCGGTTT 873
Query 796 TGGAGCCAAAACTCTGCAAAACACAGTTCACATGTTACGCCTGAGAACATGGTCAGAGCC 855
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 874 TGGAGCCAAAACTCTGGAAAAAACAGTTCACATGTTACGCCTGAGAACATGGTTAGAGCT 933
Query 856 ACTTTTACATTGAGCCGGAAGCAGATAGATAATCTAAAAAGTTGGGTTACAGAGCAGTCT 915
||||||||| |||||||||| |||||||| ||||| || || ||||||| ||||||||||
Sbjct 934 ACTTTTACAATGAGCCGGAATCAGATAGACAATCTCAAGAGCTGGGTTAAAGAGCAGTCT 993
Query 916 GAGAATCAATCTCCTGTTTCTACCTTCGTGGTGACTCTAGCTTTCATTTGGGTAAGCTTG 975
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 994 GAGAATCAATCTCCTGTTTCTACCTTCGTGGTAACTCTAGCTCTCATTTGGGTAAGCTTG 1053
Query 976 ATCAAGACACTTGTACAAGACAGTGAAACAAAGGCCAACGAGGAAGACAAGGATGAAGTA 1035
|| |||||| |||| ||||||||||||||| |||| ||||| | | | | ||
Sbjct 1054 ATGAAGACAATTGTTCAAGACAGTGAAACAGAGGCT---GAGGA---C--G-A--A-GTC 1101
Query 1036 TTTCACTTGATGATCAATGTGGATTGCAGGAATCGCCTCAAGTACACACAACCAATACCA 1095
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1102 TTTCACTTGATGATCAATGTGGATTGCAGGAATCGTCTCAAGTACACACAACCAATACCA 1161
Query 1096 CAAACATACTTTGGCAACTGTATGGCTCCTGGTATCGTATCAGTCAAGAAAC-ACGATTT 1154
|||||||||||||||||||| ||||||||||| |||||||| |||||||||| | |||||
Sbjct 1162 CAAACATACTTTGGCAACTGCATGGCTCCTGGGATCGTATCTGTCAAGAAACGA-GATTT 1220
Query 1155 GCTAGGAGAAAAATGCGTTTTGGCGGCTTCAGATGCAATCACAGCGAGAATCAAAGATAT 1214
| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1221 GTTAGGAGAGAAATGCGTTTTGGCTGCTTCAGACGCAATCACAGCGAGAATCAAAGATAT 1280
Query 1215 GTTATCAAGCGATCTGTTGAAGACAGCACCAAGATGGGGACAAGGAGTACGTAAATGGGT 1274
||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1281 GTTATCAAGCGATCTACTGAAAACAGCACCAACATGGGGACAAGGAGTACGTAAATGGGT 1340
Query 1275 CATGTCCCATTATCCAACCTCAATTGCAGGAGCTCCGAAATTGGGACTGTATGACATGGA 1334
|||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1341 CATGTCCCGTTTTCCAACCTCAATAGCAGGAGCTCCGAAATTGGGACTGTATGATATGGA 1400
Query 1335 TTTTGGATTAGGAAAGCCCTGCAAAATGGAGATCGTGCACATAGAAACAGGTGGTTCTAT 1394
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1401 TTTTGGGTTAGGAAAGCCCTGCAAAATGGAGATAGTGCACATAGAAACAGGTGGTTCAAT 1460
Query 1395 CGCATTCTCAGAGTCCAGAGACGGCAGCAATGGAGTTGAGATTGGAATAGCACTAGAGAA 1454
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1461 CGCATTCTCAGAGTCCAGAGACGGCAGTAATGGAGTTGAGATTGGAATAGCACTGGAAAA 1520
Query 1455 GAAGAAAATGGATGTGTTTGACTCAATTCTACAACAGGGGATCAAGAAATTCGCAACGTA 1514
|||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1521 GAAGAAAATGGAAGTATTTGGCTCAATTCTACAACAGGGGATCAAGAAATTCGAAACGTA 1580
Query 1515 G 1515
|
Sbjct 1581 G 1581
> Ahg919016 jgi|Araly1|919016|scaffold_100297.1
Length=1354
Score = 1840 bits (996), Expect = 0.0
Identities = 1155/1233 (94%), Gaps = 6/1233 (0%)
Strand=Plus/Plus
Query 286 GACTTTGTACCCAACCTCAAACATTC-CCTCTCCATCACTCTCCAACATTTCTTCCCTTA 344
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 105 GACTTTGTACCCAACCTCAAACAATCACC-CTCCATCACTCTCCAACATTTCTTCCCTTA 163
Query 345 CGCCGGTAAACTGATTATCCCGCCTCGTCCCGACCCTCCATATTTACACTACAACGATGG 404
||||||||||||||| |||| | ||||||||||||||||||| ||||| ||||| |||||
Sbjct 164 CGCCGGTAAACTGATCATCCTGTCTCGTCCCGACCCTCCATACTTACAGTACAATGATGG 223
Query 405 CCAAGACTCTCTTGTTTTCACCGTAGCAGAGTCTACTGAAACCGACTTCGACCAACTGAA 464
| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 224 CGAAGACTCTCTTGTTTTCACTGTAGCAGAGTCTACTGAAACCGACTTCAACCAACTGAA 283
Query 465 GTCTGATTCCCCTAAAGATATCAGTGTGTTGCATGGCGTCTTGCCCAAGTTACCTCCTCC 524
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 284 AACTGATTCCCCTAAAGATATCAGGGTGTTGCATGGCGTCTTGCCCAAGTTACCTCCTCC 343
Query 525 TCACGTCTCTCCGGAAGGAATTCAGATG-CGACCAATAATGGCTATGCAAGTCACCATCT 583
||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 344 TCATGTCTCTCCGGAAGGAATTCAGATGCCG-CCAATAATGGCGATGCAAGTCACCATCT 402
Query 584 TCCCTGGAGCTGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCAGATGGAGTCA 643
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 403 TCCCTGGAGCCGGAATCTGTATAGGCAACTCAGCTACACATGTTGTAGCGGATGGAGTCA 462
Query 644 CCTTCAGTCATTTCATGAAGTATTGGATGTCATTGACCAAATCCAGCGGTAAAGATCCCG 703
|||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||| |
Sbjct 463 CCTTCAGTCACTTCATGAAGTATTGGATGTCACTGACCAAATCCAACGGCAAAGATCCTG 522
Query 704 CCACGGTTCTTCTACCCTCTCTGCCTATTCACAGCTGCAGAAACATGATCAAGGACCCAG 763
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CCACGGTTCTTCTACCCCCTCTGCCTATTCACAGCTGCAGAAACATGATCAAGGACCCAG 582
Query 764 GCGAGGTAGGCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGCAAAACACAGTT 823
| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 583 GAGAGGTAGGCGCAGGACATTTGGAGCGGTTTTGGAGCCAAAACTCTGGAAAAAACAGTT 642
Query 824 CACATGTTACGCCTGAGAACATGGTCAGAGCCACTTTTACATTGAGCCGGAAGCAGATAG 883
||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 643 CACATGTTACGCCTGAGAACATGGTTAGAGCTACTTTTACAATGAGCCGGAATCAGATAG 702
Query 884 ATAATCTAAAAAGTTGGGTTACAGAGCAGTCTGAGAATCAATCTCCTGTTTCTACCTTCG 943
| ||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACAATCTCAAGAGCTGGGTTAAAGAGCAGTCTGAGAATCAATCTCCTGTTTCTACCTTCG 762
Query 944 TGGTGACTCTAGCTTTCATTTGGGTAAGCTTGATCAAGACACTTGTACAAGACAGTGAAA 1003
|||| ||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 763 TGGTAACTCTAGCTCTCATTTGGGTAAGCTTGATGAAGACAATTGTTCAAGACAGTGAAA 822
Query 1004 CAAAGGCCAACGAGGAAGACAAGGATGAAGTATTTCACTTGATGATCAATGTGGATTGCA 1063
|| |||| || ||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 823 CAGAGGCTAAGGAGGAAGACAAAGACGAAGTCTTTCACTTGATGATCAATGTGGATTGCA 882
Query 1064 GGAATCGCCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGTATGGCTC 1123
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 GGAATCGTCTCAAGTACACACAACCAATACCACAAACATACTTTGGCAACTGCATGGCTC 942
Query 1124 CTGGTATCGTATCAGTCAAGAAAC-ACGATTTGCTAGGAGAAAAATGCGTTTTGGCGGCT 1182
|||| |||||||| |||||||||| | |||||| |||||||||||||||||||||| |||
Sbjct 943 CTGGGATCGTATCTGTCAAGAAACGA-GATTTGTTAGGAGAAAAATGCGTTTTGGCTGCT 1001
Query 1183 TCAGATGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTGTTGAAGACAGCA 1242
||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1002 TCAGACGCAATCACAGCGAGAATCAAAGATATGTTATCAAGCGATCTACTGAAAACAGCA 1061
Query 1243 CCAAGATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCATTATCCAACCTCAATTGCA 1302
|||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 1062 CCAACATGGGGACAAGGAGTACGTAAATGGGTCATGTCCCGTTTTCCAACCTCAATAGCA 1121
Query 1303 GGAGCTCCGAAATTGGGACTGTATGACATGGATTTTGGATTAGGAAAGCCCTGCAAAATG 1362
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1122 GGAGCTCCGAAATTGGGACTGTATGATATGGATTTTGGGTTAGGAAAGCCCTGCAAAATG 1181
Query 1363 GAGATCGTGCACATAGAAACAGGTGGTTCTATCGCATTCTCAGAGTCCAGAGACGGCAGC 1422
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1182 GAGATAGTGCACATAGAAACAGGTGGTTCAATCGCATTCTCAGAGTCCAGAGATGGCAGT 1241
Query 1423 AATGGAGTTGAGATTGGAATAGCACTAGAGAAGAAGAAAATGGATGTGTTTGACTCAATT 1482
|||||||||||||||||||||||||| || |||||||||||||| || |||| |||||||
Sbjct 1242 AATGGAGTTGAGATTGGAATAGCACTGGAAAAGAAGAAAATGGAAGTATTTGGCTCAATT 1301
Query 1483 CTACAACAGGGGATCAAGAAATTCGCAACGTAG 1515
||||||||||||||||||||||||| |||||||
Sbjct 1302 CTACAACAGGGGATCAAGAAATTCGAAACGTAG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5