BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03950.1

Length=1002
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919070 jgi|Araly1|919070|scaffold_100351.1                       1103    0.0  


> Ahg919070 jgi|Araly1|919070|scaffold_100351.1
Length=673

 Score = 1103 bits (597),  Expect = 0.0
 Identities = 647/672 (96%), Gaps = 0/672 (0%)
 Strand=Plus/Plus

Query  135  ACAAGCAAGGAGAAGAAACATGAACATCTTCACTAAGAAACCTAATCCCAGAGAAGTGCT  194
            |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  2    ACAAGCAAGGGGAAGAAACATGAACATCTTCACTAAGAAACCAAATCCGAGAGAAGTGCT  61

Query  195  TCGGGAGAGTAAGAGAGAGATGACACAAGCTACCAGAGGAATCGAAAAGGAAATCGGATC  254
            | |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  62   TAGGGAGAGTAAGAGAGAAATGACACAAGCTACAAGAGGAATCGAAAAGGAAATCGGATC  121

Query  255  TCTGCAATCAGAAGaaaaaaaGCTCGTTCTCGAGATCAAAAGAACTGCTAAATCAGGCAA  314
            ||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||| ||
Sbjct  122  TCTGCAATCAGAAGAGAAAAAGCTTGTTCTCGAGATTAAAAGAACTGCTAAAACAGGGAA  181

Query  315  TGAGGGAGCGACTAAGATTCTTGCTCGGCAATTGATCCGTCTAAGGCAGCAAATAGCTAA  374
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  182  TGAGGGAGCAACTAAGATTCTTGCTCGGCAATTGATCCGGCTAAGGCAGCAAATAGCTAA  241

Query  375  CTTACAAGGTAGCCGAGCTCAAATGCGAGGCATTGCTACTCATACACAGGCTATGCATGC  434
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  242  CTTACAAGGTAGCCGAGCTCAAATGCGAGGCATAGCTACTCATACACAGGCTATGCATGC  301

Query  435  ACACACTTCAGTTGCTGCTGGAATGCAAGGTGCCACTAAGGCAATGGCAGCTATGAGCAA  494
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  GCACACTTCAGTTGCTGCTGGAATGCAAGGTGCCACTAAGGCAATGGCAGCTATGAGCAA  361

Query  495  GAATATGGATCCAGCAAAACAGGCTAAGGTTATGAGAGAATTTCAAAAGCAGTCTGCACA  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  GAATATGGATCCAGCAAAACAGGCTAAGGTTATGAGAGAATTTCAAAAGCAGTCTGCACA  421

Query  555  AATGGACATGACTACTGAGATGATGTCAGATTCCATAGATGATGCTTTAGACAATGACGA  614
            ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct  422  AATGGACATGACTACTGAGATGATGTCAGATGCCATAGATGATGCTTTAGATAATGACGA  481

Query  615  AGCTGAAGACGAAACAGAGGATTTGACAAACCAGGTTCTTGATGAAATCGGCATTGATAT  674
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  482  AGCTGAGGATGAAACAGAGGATTTGACAAACCAGGTTCTTGATGAAATCGGCATTGATAT  541

Query  675  CGCCTCGCAGTTATCATCTGCTCCAAAAGGGAAAATTGGTGGGAAGAAAGCAGAGGATGT  734
            |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct  542  CGCCTCGCAGTTATCATCTGCTCCAAAAGGTAAAATTGGTGGGAAGAATGCAGAGAATGT  601

Query  735  TGGCAGTTCTGGAATCGATGAACTGGAGAAGCGGTTGGCGGCGCTTAGATAGAAAGAAGA  794
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  602  TGGCAGTTCTGAAATCGATGAACTGGAGAAGCGGTTGGCGGCGCTTAGATAGAAAGAAGA  661

Query  795  AGTACCATGAGC  806
            ||| || |||||
Sbjct  662  AGTGCCGTGAGC  673



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37246089909


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5