BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03960.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470372 jgi|Araly1|470372|fgenesh2_kg.1__326__AT1G03960.1 2218 0.0
Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1 1555 0.0
> Ahg470372 jgi|Araly1|470372|fgenesh2_kg.1__326__AT1G03960.1
Length=1959
Score = 2218 bits (1201), Expect = 0.0
Identities = 1328/1391 (95%), Gaps = 2/1391 (0%)
Strand=Plus/Plus
Query 580 TTTGCCTTCTGTGTTTCTGAGCAGCAGCACTCCCCCACTATCTCCACGAAGCTCCTCTGG 639
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 570 TTTGCCTGCTGTGTTTCTGAGCAGCAGCACTCCCCCGCTATCTCCACGAAGCTCGTCTGG 629
Query 640 TTCCCCTCGTTTCTCCAGGCAAAGGACTAGCCCTCCTTCTCTCCACTCTCCTCTTAGATC 699
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 630 GTCCCCTCGTTTCTCGAGGCAAAGGACTAGCCCTCCTTCTCTCCAGTCTCCTCTGCGATC 689
Query 700 ACTCAAGGAGCCAAAGCGCCAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCACC 759
| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ATTCAAGGAGCCCAAGCATGAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCACC 749
Query 760 AGCAAAAGAACTAAAGGAGCAATGTCTATCCATGGTTGATCAAGTTTTTAGTAACTATAT 819
||||||||| | |||||| || ||| ||||||||||||||||| ||||||| ||||||||
Sbjct 750 AGCAAAAGACCGAAAGGAACAGTGTATATCCATGGTTGATCAATTTTTTAGAAACTATAT 809
Query 820 TGATGGACTACATGTAGATGAATTCAAATCCATTACGAAACAAGTCTGCAAGCTGCCTTC 879
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 810 TGATGGACTACATGTAGATGAGTTCAAATCCATTACGAAAGAAGTCTGCAAGCTGCCTTC 869
Query 880 TTTTCTTTCTCCTGCACTTTTCAGAAAGATCGATCCCAATTGCACTGATATAGTTACAAG 939
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 870 TTTTCTCTCTCCTGCACTTTTCAGAAAGATCGATCACAATTGCACTGATATAGTTACAAG 929
Query 940 GGATGCATTTATCAAGTATTGGATTGATGGCAATATGTTAACTATGGACACAGCCTCCCA 999
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 930 GGATGCGTTTATCAAGTATTGGATTGATGGAAATATGTTAACTATGGACACAGCCTCCCA 989
Query 1000 GATATATAATATACTAAGGCAGCAGGGCTGC-AGCTATCTCAGACAGGCAGACTTCAAAC 1058
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 990 GATATATAATATACTAAGGCAGCAGGGCTGCAAG-TACCTCAGACAGGCAGACTTCAAAC 1048
Query 1059 CAGTTCTTGATGAGCTTCTGGCAACACATCCTGGATTAGAATTTTTGAGGACGATAAGCG 1118
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1049 CAGTTCTTGATGAGCTTCTGGCAACACATCCTGGGTTAGAATTTCTGAGGACGACAAGCG 1108
Query 1119 AGTTTCAAGAAAGATATGCTGAAACGGTCATCTACAGAATATTTTACTACATTAACAGAT 1178
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1109 AATTTCAAGAAAGATATGCTGAAACTGTCATCTACAGAATATTTTACTACATTAACAGAT 1168
Query 1179 CCGGAACTGGCTGCCTTACTCTTAGAGAGCTGAGACGTGGAAATTTAATTGCTGCTATGC 1238
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1169 CCGGAACTGGTTGCCTTACTCTTAGAGAGCTGAAACGTGGAAATCTAATTGCTGCTATGC 1228
Query 1239 AACAACTTGATGAAGAGGACGACATTAATAAAATTATTAGGTACTTCTCCTATGAGCACT 1298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1229 AACAACTTGATGAAGAGGACGACATCAATAAAATTATTAGGTACTTCTCCTATGAGCACT 1288
Query 1299 TCTACGTGATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGTTTTATTGATA 1358
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1289 TCTACGTCATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGTTTAATTGATA 1348
Query 1359 AGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATAT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATAT 1408
Query 1419 TTTCACAGATTCCAAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATT 1478
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TTTCACAGGTTCCTAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGTTATGAAGATT 1468
Query 1479 TTGTGTACTTCATTCTCGCTGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGGT 1538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TTGTGTACTTCATTCTCGCCGAGGAAGACAAGTCTTCCGAGCCTAGTCTTGAGTATTGGT 1528
Query 1539 TCAAATGCGTAGACTTGGATGGAAATGGGGTAATCACTTCAAACGAAATGCAGTTTTTCT 1598
|||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
Sbjct 1529 TCAAGTGTGTAGACTTGGATGAAAATGGCGTAATCACTCCAAACGAAATGCAGTTTTTTT 1588
Query 1599 TCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCTTTTCAGTGATA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1589 TCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCTTTTCAGCGATA 1648
Query 1659 TCCTATGTCAAATAATTGACATGATTGGACCCGAGAAGGAGAACTGTATCACCCTCCAGG 1718
||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||
Sbjct 1649 TCCTATGTCAAATAATTGACATGATTGGACCCGAGAAAGAAAACTGCATCACCTTCCAGG 1708
Query 1719 ATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGT 1778
||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||| |
Sbjct 1709 ATCTGAAAGGATCCAAACTTTCAGGAAACGTCTTCAATATACTCTTCAACCTAAATAAAT 1768
Query 1779 TCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAACGGGAAGATCCAAATT 1838
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1769 TCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAAAGGGAGGATCCAAATT 1828
Query 1839 TGACAGAGTGGGATCGATTTGCTCAGAGAGAGTATGCGAGATTGTCAATGGAGGAAGATG 1898
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1829 TGACAGAGTGGGATCGATTCGCTCAGAGAGAGTATGTGAGATTGTCAATGGAGGAAGATG 1888
Query 1899 TAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACTCGAACCTCCATTTT 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 TAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACTCGAACCTCCATTTT 1948
Query 1959 AGTCCATAGTG 1969
|||||||||||
Sbjct 1949 AGTCCATAGTG 1959
Score = 407 bits (220), Expect = 2e-112
Identities = 314/356 (88%), Gaps = 20/356 (6%)
Strand=Plus/Plus
Query 247 GGTTCACACAGTAGCGTCGACTTTTCATAGCCGCTGTTGTCGAATTTTGAATTTCTCGAT 306
|||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 191 GGTTGACACAGTAGCGTCGTCTTTTCGTAGCCGCTGTTGTCGAAATTTGAATTTCTCGAT 250
Query 307 TTTCCCGGCGCTTTTGTTA---C----GATTCAAGGAGTTTGAACAAGTAGGGCTTCTCG 359
|||| ||||| |||||||| | ||||||||||||||||| ||||||| ||||||
Sbjct 251 TTTCGCGGCGGTTTTGTTACTCCAATTGATTCAAGGAGTTTGAAGGAGTAGGGTTTCTCG 310
Query 360 -T-----T--GC-GGAGATCATGGATATTGACGGAGTAGACGACGATCTTCATATTTTAG 410
| | || |||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 311 TTGCGAATAAGCAGGAGATCATGGATATTGACGGAGT--A-GACGATGTTCATATTTTAG 367
Query 411 ATCCTGAGCTCTTGCAGCTCCCCGGTTTGTCTCCTTCTCCCCTCAAACCAACCTCTCTTA 470
|||||||||||||||||||||||||||| | |||| |||| ||||| |||| ||||| ||
Sbjct 368 ATCCTGAGCTCTTGCAGCTCCCCGGTTTATATCCTGCTCCGCTCAAGCCAAGCTCTCATA 427
Query 471 TTGCTGATGACCTCTTCTCTCAGTGGCTCTCACTCCCTGAAACTGCCACATTGGTCAAGT 530
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 TTGCCGATGAACTCTTCTCTCAGTGGCTCTCACTCCCTGAAACTGCCAGATTGGTCAAGT 487
Query 531 CTTTGATTGATGATGCTAAATCTGGAACACCAACTAATAAATCCAAGAATT-TGCC 585
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 488 CTTTGATTGATGATGCTAAATCTGGAACACCAACTAATTTATCCAAGAATTATGCC 543
> Ahg494587 jgi|Araly1|494587|fgenesh2_kg.8__403__AT5G44090.1
Length=1996
Score = 1555 bits (842), Expect = 0.0
Identities = 1218/1397 (87%), Gaps = 35/1397 (3%)
Strand=Plus/Plus
Query 581 TTGCCTTCTGTGTTTCTGAGCAGCAGCACTCCCCCACTATCTCCACGAAGCTC-CTCTGG 639
||||| ||||||||||||| |||| |||| ||||||||||| |||||| |||| | ||||
Sbjct 403 TTGCCATCTGTGTTTCTGAACAGCGGCACGCCCCCACTATCCCCACGAGGCTCAC-CTGG 461
Query 640 TTC-CCCTCGTTTCTCCAGGCAAAGGACTAGCCCTCCTTCTCTCCACTCTCCTCTTAGAT 698
|| ||| |||||||| ||||||| ||| || | |||||||| || |||||||| | ||
Sbjct 462 GTCTCCC-CGTTTCTCGAGGCAAAAGACAAG--C-CCTTCTCTACAGTCTCCTCTGAAAT 517
Query 699 CACTCAAG-GAGCCAAAGCGCCAACTCATTCCTCAGTTCTACTACCAACACGGGCGTCCA 757
|| || || || |||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 518 CAGTC-AGAGAACCAAAGCGCCAACTCATTCCTCAGTTTTACTTCCAACATGGGCGTCCA 576
Query 758 CCAGCAAAAGAACTAAAGGAGCAATGTCTATCCATGGTTGATCAAGTTTTTAGTAACTAT 817
|| || |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 577 CCTGCGAAAGAACTAAGGGAGCAATGTATATCCATGGTTGATCAATTTTTTAGTAACTAT 636
Query 818 ATTGATGGACTACATGTAGATGAATTCAAATCCATTACGAAACAAGTCTGCAAGCTGCCT 877
|| || ||||| ||| | |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 637 ATAGACGGACTTCATATGGATGAATTCAAATCCATTACTAAAGAAGTCTGCAAGCTGCCT 696
Query 878 TCTTTTCTTTCTCCTGCACT-TTTCAGAAAGATCGATCCCAATTGCACTGATATAGTTAC 936
|||||||||||| ||| ||| ||| |||||||| ||| | | |||||||| ||| |||||
Sbjct 697 TCTTTTCTTTCTTCTGTACTATTT-AGAAAGATAGATACGAGTTGCACTGGTATCGTTAC 755
Query 937 AAGGGATGCATTTATCAAGTATTGGATTGATGGCA-ATATGTTAACTATGGACACAGCCT 995
||||||||||||||||||||||||| ||||||| | ||||||| | |||||| |||||
Sbjct 756 AAGGGATGCATTTATCAAGTATTGGGTTGATGG-ACATATGTTGGCAATGGACGTAGCCT 814
Query 996 CCCAGATATATAATATACTAAGGCAG-CAGGGCTGC-AGCTATCTCAGACAGGCAGACTT 1053
| |||||||||||||| || ||||| || || ||| || || || |||||||| |||||
Sbjct 815 CACAGATATATAATATTTTACGGCAGCCA-GGTTGCAAG-TACCTTAGACAGGCTGACTT 872
Query 1054 CAAACCAGTTCTTGATGAGCTTCTGGCAACACATCCTGGATTAGAATTTTTGAGGACGAT 1113
||||||||||||||| ||||||||| |||| |||||||| || ||||| | |||| ||
Sbjct 873 CAAACCAGTTCTTGAAGAGCTTCTGACAACTCATCCTGGCTTGGAATTCCTCAGGA--AT 930
Query 1114 A-AGC-GAGTTTCAAGAAAGATATGCTGAAACGGTCATCTACAGAATATTTTACTACATT 1171
| | | || |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 931 ACACCTGAATTTCAAGAAAGATATGCTGAGACCGTCATCTACAGAATATTTTACTACATA 990
Query 1172 AACAGATCCGGAACTGGCTGCCTTACTCTTAGAGAGCTG-AGACGTGGAAAT-TTAATTG 1229
|||||||| || ||||| ||| |||| |||||||||||| || ||||| ||| || |||
Sbjct 991 AACAGATCAGGTACTGGTTGCATTACCCTTAGAGAGCTGAAG-CGTGGGAATCTT-ATTA 1048
Query 1230 CTGCTATGCAACAACTTGATGAAGAGGACGACATTAATAAAATTATTAGGTACTTCTCCT 1289
|||| ||||||||| |||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 1049 CTGCCATGCAACAAGTTGATGAAGAAGACGACATCAATAAAGTTATTAGGTACTTCTCCT 1108
Query 1290 ATGAGCACTTCTACGTGATATACTGCAAATTTTGGGAACTTGATGGTGACCATGATTGT- 1348
||||||| |||||||| |||||||||| |||||||||||| ||||| |||||||||| |
Sbjct 1109 ATGAGCATTTCTACGTTATATACTGCAGATTTTGGGAACTCGATGGCGACCATGATT-TC 1167
Query 1349 TTTATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTT 1408
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1168 CTTATTGATAAGGAAAATCTCATCAAATATGGTAATCATGCACTTACCTACAGGATTGTC 1227
Query 1409 GATAGAATATTTTCACAGATTCCAAGGAAGTTTACGAGTAAAGTTGAAGGGAAGATGAGT 1468
|| ||||||||||||||| | || ||||| ||||| || |||||||| ||||||||||||
Sbjct 1228 GACAGAATATTTTCACAGGTCCCTAGGAAATTTACAAGCAAAGTTGAGGGGAAGATGAGT 1287
Query 1469 TATGAAGATTTTGTGTACTTCATTCTCGCTGAGGAAGACAAGTCTTCCGAGCCTAGTCTT 1528
||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 1288 TATGAAGATTTTGCATACTTCATTCTCGCTGAGGAGGATAAGTCATCTGAGCCTAGTCTT 1347
Query 1529 GAGTATTGGTTCAAATGCGTAGACTTGGATGGAAATGGGGTAATCACTTCAAACGAAATG 1588
|||||||||||||| ||| ||||| |||||||| ||||||| |||||| | |||||||||
Sbjct 1348 GAGTATTGGTTCAAGTGCATAGACCTGGATGGAGATGGGGTGATCACTCCCAACGAAATG 1407
Query 1589 CAGTTTTTCTTCGAAGAGCAGCTGCATCGCATGGAATGCATAACCCAGGAAGCTGTTCT- 1647
|||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||| ||
Sbjct 1408 CAGTTTTTCTACGAAGAGCAGCTGCATCGCATGGAATGTATAACTCAGGAACCTGTACTC 1467
Query 1648 TTTCAGTGATATCCTATGTCAAATAATT-GACATGATTGGACCCGAGAAGGAGAACTGTA 1706
||| | ||||||||||||||||| ||| ||||||||| ||| |||||||||||||| |
Sbjct 1468 TTTGA-AGATATCCTATGTCAAAT-ATTCGACATGATTAAACCAGAGAAGGAGAACTGCA 1525
Query 1707 TCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCA 1766
|||| |||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||
Sbjct 1526 TCACACTCCAGGATCTGAAAGCATCTAAACTTTCTGGAAATATTTTCAATATACTCTTCA 1585
Query 1767 ACCTTAATAAGTTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGGAACGGG 1826
|||| || || |||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 1586 ACCTGAACAAATTCATGGCTTTTGAAACCCGTGACCCTTTTCTCATTCGCCAGGAACGTG 1645
Query 1827 AAG-ATCCAA-ATTTGACAGAGTGGGATCGATTTGCTCAGAGAGAGTATGCGAGATTGTC 1884
|| |||||| | ||||| || ||||| |||||||||||||||||||||| ||| |||||
Sbjct 1646 -AGAATCCAACA-TTGACGGAATGGGACCGATTTGCTCAGAGAGAGTATGTGAGGTTGTC 1703
Query 1885 AATGGAGGAAGATGTAGATGAAGTCTCAAATGGGAGTGCAGATGTCTGGGATGAACCACT 1944
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1704 AATGGAGGAAGATGTGGAGGAAGTCTCGAATGGGAGTGCAGATGTCTGGGATGAACCACT 1763
Query 1945 CGAACCTCCATTTTAGT 1961
||| ||||||||||||
Sbjct 1764 CGAGTCTCCATTTTAGT 1780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5