BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03970.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470374 jgi|Araly1|470374|fgenesh2_kg.1__328__AT1G03970.1 1489 0.0
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 420 1e-116
Ahg924174 jgi|Araly1|924174|scaffold_105455.1 374 1e-102
> Ahg470374 jgi|Araly1|470374|fgenesh2_kg.1__328__AT1G03970.1
Length=1047
Score = 1489 bits (806), Expect = 0.0
Identities = 932/991 (94%), Gaps = 16/991 (2%)
Strand=Plus/Plus
Query 107 AAATTCGTTCCAATTCCAGTGAGCTCCGGAAATGGCGTCCTTCAAGTTGATGTCTTCTTC 166
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 63 AAATTCGTTCCAATTCCAGTGTGCTTCGGAAATGGCATCCTTCAAGTTGATGTCTTCTTC 122
Query 167 CAATTCCGACT-TGTCTCGCCGTAATTCTTCTTCTGCTTCATCTTCCCCTTCTATAAGAT 225
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAATTCCGA-TCTGTCTCGCCGTAATTCTTCTTCTGCTTCATCTTCCCCTTCTATAAGAT 181
Query 226 CATCG---CACCATCTCCGACCAAATCCTCACGCCGATCACTCCAGAATCAGTTTCGCTT 282
| ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 182 CGTCGTCTCACCATCTCCGACCAAATCCTCTCGCCGATCACTCCCGAATCAGTTTCGCTT 241
Query 283 ACGGCGGAGGAGTCAACGATTACACTTTCGCGTCTGATTCAAAGCCCTTCGAGATGGCGA 342
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACGGCGGA-G-G-CAACGATTACACTTTCGCGTCTGATTCAAAGCCCTTCGAGATGGCGA 298
Query 343 TTGATGTTGATCGGAGTATCGGAGATCGGAACAGCGTTAACAACGGAAAGAGTGTTGACG 402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 299 TTGATGTTGATCGGAGTATCGGAGATCGGAACAGCGTTAACAACGGTAAGAGTGTGGACG 358
Query 403 ATGTTTGGAAAGAGATTGTATCTGGAGAGCAAAAGACGATCATGATGAAGGAAGAAGAAC 462
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 359 ATGTTTGGAAAGAGATTGTATCTGGAGAGCAAAAGACCATCATGATGAAGGAGGAAGAAC 418
Query 463 CAGAAGATATAATGACACTTGAGGATTTCTTAGCGAAAGCAGAAATGGACGAGGGAGCTT 522
||||||||||||||| ||||||||||||||||| ||||||| |||||| || |||| ||
Sbjct 419 AAGAAGATATAATGACGCTTGAGGATTTCTTAGCCAAAGCAGCAATGGATGACGGAGGTT 478
Query 523 CAGATGAAATCGATGTGAAGATTCCAACGGAGAGACTCAACAACGACGGTAGCTATACAT 582
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 CAGATGAAATTGATGTTAAGATTCCACCGGAGAGACTCAACAACGACGGTAGCTATACAT 538
Query 583 TTGATTTTCCGATGCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAATGGGT---G 639
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 539 TCGATTTTCCGATGCAGCGACACAGTTCGTTTGAGATGATTGAAGGATCAATGGGTGGAG 598
Query 640 GAGGAGTAAC---GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTG 696
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 GAGGAGGAACAATGAGAGGAAAGAGAGGGAGAGTGATGACGGAGGCAATGGATAAAGCTG 658
Query 697 CAGCTCAGAGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGA 756
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 CAGCTCAGAGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCCAGGTCTCGAGAGA 718
Query 757 GGAAACAGGCTTATCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGAGGAGAATG 816
|||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 719 GGAAACAGGCTTATCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGAGAATG 778
Query 817 AGCAGCTTTTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGG 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCAGCTTTTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGG 838
Query 877 TTCTGATTCCGGTCGATGAGAAACCAAGGCCACCGTCGAGGCCCTTAAGCAGGAGCCATT 936
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 839 TTCTGATTCCGGTCGATGAGAAACCAAGGCCACCATCTAGGCCCTTAAGCAGAAGCCATT 898
Query 937 CCTTGGAATGGTGAAGTGTGGTaaaaaaaacttttgtatgtaaaaaaaataaaaaCATAT 996
||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 899 CCTTGGAATGGTGAACAGTGGTAACAAAA-CTTTTGTATGTAAAAAAA-TAAAAACATAT 956
Query 997 GGGCTTGATTACTATATTATAATCTATATAGTAAAGTGATGGTGATATGGTTAGTACTTA 1056
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 957 GGGCTTGATTACTATATTATAATCTTTATAGTAAAGTGATGGTGATATGGTTACTACTTT 1016
Query 1057 GTTACCTGTAATGTATCTAAGGGATGTAATG 1087
|||||||||| ||| ||| ||||||||||||
Sbjct 1017 GTTACCTGTAGTGTCTCTCAGGGATGTAATG 1047
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 420 bits (227), Expect = 1e-116
Identities = 274/296 (93%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 596 GCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAAT-G--GGTGGAGGAGTAACGAG 652
||||| |||||||||||| |||||| ||||||||||||| | || ||||||| || |||
Sbjct 12 GCAGCAACACAGTTCGTTTCAGATGATTGAAGGATCAATGGTTGGAGGAGGAGGAATGAG 71
Query 653 AGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACAGAA 712
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 72 AGGAAAGAGAGGGAGAGTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACAGAA 131
Query 713 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTATCA 772
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 132 GAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTATCA 191
Query 773 GGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGAAGG 831
||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||||
Sbjct 192 AGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGAAGG 250
Query 832 AGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 887
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 251 AGATTGAAGAGAGCACTAAAGAGAGATTCAAGAAGCTCATGGACGTTTTGATTCCG 306
> Ahg924174 jgi|Araly1|924174|scaffold_105455.1
Length=278
Score = 374 bits (202), Expect = 1e-102
Identities = 227/239 (95%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 650 GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACA 709
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 2 GAGAGGAAAGAGAGGGAGAGTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACA 61
Query 710 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTA 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTA 121
Query 770 TCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGA 828
||| ||||||||||||||||||||||| || |||||||| || ||||||| |||||||||
Sbjct 122 TCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGA 180
Query 829 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 887
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 181 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGACGTTTTGATTCCG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5