BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03980.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948730 jgi|Araly1|948730|scaffold_800617.1 1098 0.0
Ahg333720 jgi|Araly1|333720|fgenesh1_pg.C_scaffold_1000285 1094 0.0
Ahg470374 jgi|Araly1|470374|fgenesh2_kg.1__328__AT1G03970.1 922 0.0
Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421 420 3e-116
Ahg924174 jgi|Araly1|924174|scaffold_105455.1 374 2e-102
> Ahg948730 jgi|Araly1|948730|scaffold_800617.1
Length=1500
Score = 1098 bits (594), Expect = 0.0
Identities = 955/1128 (85%), Gaps = 30/1128 (3%)
Strand=Plus/Plus
Query 237 AATGTCTATGGCGAGTTTGTATCGGCGGTCTC-T--TTCCCCTCCGGCGATAGA-TTTCG 292
|||| ||||||||||||| |||||||| |||| | ||| ||||||||||| || |||
Sbjct 20 AATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCGATTGACTTT-T 78
Query 293 CTTCTTTTGAAGGAAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGAT 352
||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 79 CTTCTGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGAT 138
Query 353 TTTTCGGGCTGATTTCTTATTTTCAGACACAGTCTGAGCCAGCTTTTTGTGGCTTAGCTA 412
||||| || ||||||| ||||||||||| |||||||| || || | ||||||||| ||||
Sbjct 139 TTTTCAGGTTGATTTCGTATTTTCAGACGCAGTCTGAACCTGCGTATTGTGGCTTGGCTA 198
Query 413 GTCTTTC-GATGGTTTTGAATTCTCTTTCTATTGACCCGGGAAG-AAAGTGGAAAGGGCC 470
||||||| | |||| |||||| ||||||||||||| || ||| | ||| |||||||||||
Sbjct 199 GTCTTTCTG-TGGTGTTGAATGCTCTTTCTATTGATCCTGGACGCAAA-TGGAAAGGGCC 256
Query 471 TTGGAGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCGCTTGAAATAGTGAAGGA 530
||||||||||||||||||||||||| |||| || |||||||| |||||| | ||||||||
Sbjct 257 TTGGAGGTGGTTTGATGAATCAATGTTGGACTGCTGCGAGCCTCTTGAAGTGGTGAAGGA 316
Query 531 TAAAGGCATTTCATTTGGAAAAGTGGTCTGTTTAGCTCATTCTTCAGGAGCAAAAGTCGA 590
|| || ||||||||||| ||||| |||||||| ||||||| ||||||||||||||| ||
Sbjct 317 GAAGGGAATTTCATTTGGGAAAGTTGTCTGTTTGGCTCATTGTTCAGGAGCAAAAGTTGA 376
Query 591 AGCTTTCCGCACAAATCAGAGCACCATTGATGATTTCCGCAAATATGTGGTCAAATGTTC 650
|||||||| |||| ||||||||||||||| ||||||||||||| ||| | ||||| |
Sbjct 377 GGCTTTCCGTACAAGTCAGAGCACCATTGAGGATTTCCGCAAATTTGTCTTGAAATGCAC 436
Query 651 AACTTCTGATAATTGTCATATGATCTCAACATATCATAG-GCAAGTACTCAAGCAGACTG 709
| |||||| ||||| |||||||||||| ||||||| || | || | | ||||||||
Sbjct 437 GAGTTCTGAGAATTGCCATATGATCTCATCATATCACAGAG-GTGTTTTTATGCAGACTG 495
Query 710 GAACTGGCCACTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTC 769
| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 496 GGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTC 555
Query 770 TTGATGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGATG 829
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 556 TTGATGTTGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAG 615
Query 830 CCATGGATAGTATTGATCAGTCAACAGGGAGACGTAGAGGGTTCATGCTTATATCAAGAC 889
||||||| || |||||| ||||||| |||| |||||||||||||||||| ||||| ||||
Sbjct 616 CCATGGACAGCATTGATGAGTCAACTGGGAAACGTAGAGGGTTCATGCTCATATCTAGAC 675
Query 890 CCCACAGAGAACCAGGATTGCTCTATACATTAAGTTGTAAGGATGAGAGCTGGATC-AGC 948
||||| ||||||| |||||||||||||| || || || |||||||| ||||||||| | |
Sbjct 676 CCCACCGAGAACCCGGATTGCTCTATACTTTGAGCTGCAAGGATGAAAGCTGGATCGA-C 734
Query 949 ATTGCAAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGCTCACAACATGTTGA-TAC 1007
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |
Sbjct 735 ATAGCAAAGTATTTGAAGGAAGATGTTCCACGTCTTGTAAGTTCACAACATGTAGACT-C 793
Query 1008 TATTGA-AAGAATCTTATATGTTGTATTCAAGTCACTTCCAGCAAATTTCAACCAATTTA 1066
| | || || |||| ||| |||||| ||||||||||||||| |||| ||||||||||| |
Sbjct 794 TGTGGACAA-AATCATATCTGTTGTGTTCAAGTCACTTCCATCAAACTTCAACCAATTCA 852
Query 1067 TCAAATGGATGGCTGAGATTC-GAAGAACAGAGGA-TGTAAATCAAAATCTTAGCTCAGA 1124
||| |||| |||||||||| | ||| ||||||||| | ||| |||| ||| ||| ||||
Sbjct 853 TCAGATGGGTGGCTGAGAT-CAGAATAACAGAGGACTC-AAACCAAATTCTCAGCGCAGA 910
Query 1125 AGAGAAATCAAGGCTCAAATTAAAGCAAGAGTTACTGAAACAAGTGCAAGAAACTAAACT 1184
||||| ||| |||| ||| |||||||| | | |||||| ||||||| |||||| ||||
Sbjct 911 GGAGAAGTCACGGCTGAAACTAAAGCAATTGGTGCTGAAAGAAGTGCACGAAACTGAACT 970
Query 1185 GTTCAAGCATGTGGATAAGTTTCTC-TCCTCTGTG--T-ACGAAGACAATCTGCCATATG 1240
|||||| || | ||||||| || ||||| ||| | ||||||||| |||| ||||||
Sbjct 971 GTTCAAACACATCAATAAGTT-CTTATCCTCAGTGGGTTACGAAGACAGTCTGACATATG 1029
Query 1241 TTGCTGCTAAGGTTTATTGTGACGGAGATGAAATCTTATCGGGATATGA--ATCAGATGA 1298
|||||| |||| || ||| | |||| |||||||||||| ||| | | |||| | ||
Sbjct 1030 CTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCTGGA-A-GCCCATCAAAAGA 1087
Query 1299 ATCCTGTTGTAAGGAAACTTGTGTCAAATGTATCAAAGGTCTTGGTGA 1346
| ||||||| |||||||||||| ||||| |||||||||| || |||
Sbjct 1088 GTTCTGTTGTCGGGAAACTTGTGTGAAATGCATCAAAGGTCCTGATGA 1135
> Ahg333720 jgi|Araly1|333720|fgenesh1_pg.C_scaffold_1000285
Length=1248
Score = 1094 bits (592), Expect = 0.0
Identities = 655/685 (96%), Gaps = 5/685 (1%)
Strand=Plus/Plus
Query 238 ATGTCTATGGCGAGTTTGTATCGGCGGTCTCTT---TCCCCTCCGGCGATAGATTTCGCT 294
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1 ATGTCTATGGCGAGTTTGTATCGGCGATCTCTTACCTCCCCGCCGGCGATAGATTTCGCT 60
Query 295 TCTTTTGAAGGAAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGATTT 354
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTTGAAGGCAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGATTT 120
Query 355 TTCGGGCTGATTTCTTATTTTCAGACACAGTCTGAGCCAGCTTTTTGTGGCTTAGCTAGT 414
||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 121 TTCAGGCTGATTTCTAATTTTCAGACTCAGTCTGAGCCAGCTTTTTGTGGGTTAGCTAGT 180
Query 415 CTTTCGATGGTTTTGAATTCTCTTTCTATTGACCCGGGAAGAAAGTGGAAAGGGCCTTGG 474
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 CTTTCTATGGTTTTGAATTCTCTTTCTATTGACCCGGGGAGAAAATGGAAAGGGCCTTGG 240
Query 475 AGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCGCTTGAAATAGTGAAGGATAAA 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCCCTTGAAATAGTGAAGGATAAA 300
Query 535 GGCATTTCATTTGGAAAAGTGGTCTGTTTAGCTCATTCTTCAGGAGCAAAAGTCGAAGCT 594
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GGCATTTCGTTTGGTAAAGTTGTCTGTTTGGCTCATTCTTCAGGAGCAAAAGTCGAAGCT 360
Query 595 TTCCGCACAAATCAGAGCACCATTGATGATTTCCGCAAATATGTGGTCAAATGTTCAACT 654
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 TTCCGCACAAACCAGAGCACCATTGATGATTTCCGCAAATACGTGGTCAAATGTTCCACT 420
Query 655 TCTGATAATTGTCATATGATCTCAACATATCATAG-GCAAGTACTCAAGCAGACTGGAAC 713
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 421 TCTGATAATTGTCATATGATCTCAACATATCATAGAG-AAGTACTCAAGCAGACTGGAAC 479
Query 714 TGGCCACTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTCTTGA 773
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGCCATTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTCTTGA 539
Query 774 TGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGATGCCAT 833
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCACTTAAACTTCTTTGGGATGCCAT 599
Query 834 GGATAGTATTGATCAGTCAACAGGGAGACGTAGAGGGTTCATGCTTATATCAAGACCCCA 893
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 GGACAGTATTGATCAGTCGACAGGGAGACGTAGAGGGTTCATGCTTATATCCAGACCCCA 659
Query 894 CAGAGAACCAGGATTGCTCTATACA 918
|||||||||||||||||||||||||
Sbjct 660 CAGAGAACCAGGATTGCTCTATACA 684
Score = 900 bits (487), Expect = 0.0
Identities = 538/562 (96%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 1039 TCACTTCCAGCAAATTTCAACCAATTTATCAAATGGATGGCTGAGATTCGAAGAACAGAG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 688 TCACTTCCAGCAAATTTCAACCAATTTATCAAATGGATGGCTGAGATTCGAAGAATAGAG 747
Query 1099 GATGTAAATCAAAATCTTAGCTCAGAAGAGAAATCAAGGCTCAAATTAAAGCAAGAGTTA 1158
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 748 GATGTAAATCAAAATCTTAGCTCAGAAGAGAAATCAAGGCTCGACTCAAAGCAAGAGTTA 807
Query 1159 CTGAAACAAGTGCAAGAAACTAAACTGTTCAAGCATGTGGATAAGTTTCTCTCCTCTGT- 1217
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 808 CTGAAACAAGTGCAAGAAACTAAACTGTTCAAGCACGTAGATAAGTTTCTATCCTCTGTG 867
Query 1218 -G-TACGAAGACAATCTGCCATATGTTGCTGCTAAGGTTTATTGTGACGGAGATGAAATC 1275
| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 868 GGTTACGAAGACAATCTGCCATATGTTGCTGCTAAGGTTTATTGCGAAGGAGATGAAATC 927
Query 1276 TTATCGGGATATGAATCAGATGAATCCTGTTGTAAGGAAACTTGTGTCAAATGTATCAAA 1335
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 928 TTATCGGGATATGAATCAGATGAGTCTTGTTGTGAGGAAACTTGTGTCAAATGTATCAAA 987
Query 1336 GGTCTTGGTGAGGAGAAAGTGACAGTGGTAGCTTACCCATCCGGGAACGATGTGTTCACT 1395
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 988 GGTCTTGCTGAGGAGAAAGTGACAGTGGTAGCTTACCCATCCGAGAACGATGTATTCACT 1047
Query 1396 GCTCTTCTGTTGGCTTTACCTCCACAGACGTGGTCAGGTATCAAAGACCAGTCACTTTTG 1455
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1048 GCTCTTCTGTTGGCTTTACCTCCACAAACTTGGTCAGGTATCAAAGACCAGTCACTTTTG 1107
Query 1456 CAAGAAATGAAACAGCTCATTTCCATGGTTAGCCACCCGACTTTGCTTCAACAAGAGGTT 1515
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1108 CAAGAAATGAAACAGCTCATTTCCATGGTTAGCCTTCCGACTTTGCTTCAACAAGAGGTT 1167
Query 1516 TTGCATCTACGACGCCAACTTGAGATGCTAAAACGATGCCAGGAGAATAAAGAAGACGAA 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TTGCATCTACGACGCCAACTTGAGATGCTAAAACGATGCCAGGAGAATAAAGAAGACGAA 1227
Query 1576 GA-ACTCTCTGCTCCTGCCTAA 1596
| |||||||||||||||||||
Sbjct 1228 -ATACTCTCTGCTCCTGCCTAA 1248
> Ahg470374 jgi|Araly1|470374|fgenesh2_kg.1__328__AT1G03970.1
Length=1047
Score = 922 bits (499), Expect = 0.0
Identities = 583/623 (94%), Gaps = 8/623 (1%)
Strand=Plus/Minus
Query 1721 CATTACATCCCTTAGATACATTACAGGTAACTAAGTACTAACCATATCACCATCACTTTA 1780
|||||||||||| ||| ||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct 1047 CATTACATCCCTGAGAGACACTACAGGTAACAAAGTAGTAACCATATCACCATCACTTTA 988
Query 1781 CTATATAGATTATAATATAGTAATCAAGCCCATATGtttttattttttttacatacaaaa 1840
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 987 CTATAAAGATTATAATATAGTAATCAAGCCCATATGTTTTTA-TTTTTTTACATACAAAA 929
Query 1841 gttttttttACCACACTTCACCATTCCAAGGAATGGCTCCTGCTTAAGGGCCTCGACGGT 1900
| |||| ||||||| |||||||||||||||||||||| |||||||||||||| || |||
Sbjct 928 G-TTTTGTTACCACTGTTCACCATTCCAAGGAATGGCTTCTGCTTAAGGGCCTAGATGGT 870
Query 1901 GGCCTTGGTTTCTCATCGACCGGAATCAGAACCTCCATGAGCTTCTTGTATCTCTCTTTA 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GGCCTTGGTTTCTCATCGACCGGAATCAGAACCTCCATGAGCTTCTTGTATCTCTCTTTA 810
Query 1961 GTGCTCTCTTCAATCTCCTTCAAAAGCTGCTCATTCTCCTCCTCTAACTTGGCAGCCAAA 2020
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 809 GTGCTCTCTTCAATCTCCTTCAAAAGCTGCTCATTCTCTTCCTCTAATTTCGCAGCCAAA 750
Query 2021 GTCTCTAACTCAACCTGATAAGCCTGTTTCCTCTCTCGAGACCTAGCAGCGGATTCACGG 2080
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 749 GTCTCTAACTCAACTTGATAAGCCTGTTTCCTCTCTCGAGACCTGGCAGCGGATTCACGG 690
Query 2081 TTCTTGATCATCCTCTTCTGTCTCTGAGCTGCAGCTTTATCCATTGCCTCCATCATCACT 2140
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 689 TTCTTGATCATCCTCTTCTGTCTCTGAGCTGCAGCTTTATCCATTGCCTCCGTCATCACT 630
Query 2141 CTCCCTCTCTTTCCTCTC---GTTACTCCTCC---ACCCATTGATCCTTCAACCATCTGG 2194
|||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||
Sbjct 629 CTCCCTCTCTTTCCTCTCATTGTTCCTCCTCCTCCACCCATTGATCCTTCAATCATCTCA 570
Query 2195 AACGAACTGTGTCGCTGCATCGGAAAATCAAATGTATAGCTACCGTCGTTGTTGAGTCTC 2254
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 569 AACGAACTGTGTCGCTGCATCGGAAAATCGAATGTATAGCTACCGTCGTTGTTGAGTCTC 510
Query 2255 TCCGTTGGAATCTTCACATCGATTTCATCTGAAGCTCCCTCGTCCATTTCTGCTTTCGCT 2314
|||| ||||||||| ||||| |||||||||||| |||| || |||||| ||||||| |||
Sbjct 509 TCCGGTGGAATCTTAACATCAATTTCATCTGAACCTCCGTCATCCATTGCTGCTTTGGCT 450
Query 2315 AAGAAATCCTCAAGTGTCATTAT 2337
|||||||||||||| ||||||||
Sbjct 449 AAGAAATCCTCAAGCGTCATTAT 427
> Ahg889435 jgi|Araly1|889435|Al_scaffold_0007_1421
Length=792
Score = 420 bits (227), Expect = 3e-116
Identities = 274/296 (93%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 1921 CGGAATCAGAACCTCCATGAGCTTCTTGTATCTCTCTTTAGTGCTCTCTTCAATCTCCTT 1980
|||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 CGGAATCAAAACGTCCATGAGCTTCTTGAATCTCTCTTTAGTGCTCTCTTCAATCTCCTT 247
Query 1981 CAAAAGCTGCTCATTCTCC-TCCTCTAACTTGGCAGCCAAAGTCTCTAACTCAACCTGAT 2039
|||||||| ||||||| || |||||||| || ||||||||||||||||||||||| ||||
Sbjct 246 CAAAAGCTTCTCATTC-CCTTCCTCTAATTTCGCAGCCAAAGTCTCTAACTCAACTTGAT 188
Query 2040 AAGCCTGTTTCCTCTCTCGAGACCTAGCAGCGGATTCACGGTTCTTGATCATCCTCTTCT 2099
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AAGCTTGTTTCCTCTCTCGAGACCTAGCAGCGGATTCACGGTTCTTGATCATCCTCTTCT 128
Query 2100 GTCTCTGAGCTGCAGCTTTATCCATTGCCTCCATCATCACTCTCCCTCTCTTTCCTCTCG 2159
|||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 127 GTCTTTGAGCTGCAGCTTTATCCATTGCCTTCGTCATCACTCTCCCTCTCTTTCCTCTCA 68
Query 2160 TTACTCCTCCACC--C-ATTGATCCTTCAACCATCTGGAACGAACTGTGTCGCTGC 2212
|| ||||||| || | ||||||||||||| |||||| |||||||||||| |||||
Sbjct 67 TTCCTCCTCCTCCAACCATTGATCCTTCAATCATCTGAAACGAACTGTGTTGCTGC 12
> Ahg924174 jgi|Araly1|924174|scaffold_105455.1
Length=278
Score = 374 bits (202), Expect = 2e-102
Identities = 227/239 (95%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 1921 CGGAATCAGAACCTCCATGAGCTTCTTGTATCTCTCTTTAGTGCTCTCTTCAATCTCCTT 1980
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGGAATCAAAACGTCCATGAGCTTCTTGTATCTCTCTTTAGTGCTCTCTTCAATCTCCTT 180
Query 1981 CAAAAGCTGCTCATTCTCC-TCCTCTAACTTGGCAGCCAAAGTCTCTAACTCAACCTGAT 2039
|||||||| ||||||| || |||||||| || ||||||||||||||||||||||| ||||
Sbjct 179 CAAAAGCTTCTCATTC-CCTTCCTCTAATTTCGCAGCCAAAGTCTCTAACTCAACTTGAT 121
Query 2040 AAGCCTGTTTCCTCTCTCGAGACCTAGCAGCGGATTCACGGTTCTTGATCATCCTCTTCT 2099
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGCTTGTTTCCTCTCTCGAGACCTAGCAGCGGATTCACGGTTCTTGATCATCCTCTTCT 61
Query 2100 GTCTCTGAGCTGCAGCTTTATCCATTGCCTCCATCATCACTCTCCCTCTCTTTCCTCTC 2158
|||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 60 GTCTTTGAGCTGCAGCTTTATCCATTGCCTTCGTCATCACTCTCCCTCTCTTTCCTCTC 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5