BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03982.1

Length=1290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910067 jgi|Araly1|910067|Al_scaffold_0001_321                     422    4e-117


> Ahg910067 jgi|Araly1|910067|Al_scaffold_0001_321
Length=513

 Score =  422 bits (228),  Expect = 4e-117
 Identities = 422/507 (83%), Gaps = 48/507 (9%)
 Strand=Plus/Plus

Query  604   AGAAAACGAGAAAGAGGC-AGAGATGCAAATTGGAACTCCAACAGATGTAAAACATGTTG  662
             |||||| |||||||| || ||||||||||||||||| ||||||||||||||| |||||||
Sbjct  45    AGAAAATGAGAAAGA-GCAAGAGATGCAAATTGGAAGTCCAACAGATGTAAAGCATGTTG  103

Query  663   CTCACATTGGTTGGGATGGAGGCTCTGTCAATCATAATCCACCCAGCTGGATGAAAGATT  722
             |||||||||||||||||||||| ||||||||||| ||||||||||||||||||  | |  
Sbjct  104   CTCACATTGGTTGGGATGGAGGATCTGTCAATCAAAATCCACCCAGCTGGATG--A-A--  158

Query  723   TCAAAGTATTGGGTGGATATTCACCGGCGCTTATC-GGAAATATCAAGGAGGATGCTTCA  781
             |    | |||   |   ||   |     |  |||| ||||||||||||||||||||||||
Sbjct  159   T----G-ATT---T---TA---A----AG--TATCGGGAAATATCAAGGAGGATGCTTCA  198

Query  782   TGCATTTTTGAAGATTCGACTCGGTCACGTGATATACCGAGACTTCCAAAATCGTCGAGA  841
             ||||||| |||||||| ||| ||||||||||||| |||| |||||| |||||||||||||
Sbjct  199   TGCATTTCTGAAGATTTGACACGGTCACGTGATAAACCGGGACTTCAAAAATCGTCGAGA  258

Query  842   GAGCGTTCGAGCACTTTAGGTGGTTCACCAACAAAAGAACGATCACGACGACGTGGATCT  901
             ||||||| ||||||||||||||||||||||||||||||| || | | |||||||||||||
Sbjct  259   GAGCGTTGGAGCACTTTAGGTGGTTCACCAACAAAAGAAGGA-C-C-ACGACGTGGATCT  315

Query  902   TCACAATATAATGGAAACCCTAAAGTTTCACGGAGATCATCAAAAGAATCTTCTGCTATT  961
             || || |  | ||||||||||||||||||||||||||||  ||  |||||| ||| ||||
Sbjct  316   TCGCATTGCAGTGGAAACCCTAAAGTTTCACGGAGATCA--AAG-GAATCTCCTGATATT  372

Query  962   CCTCAA-GATGGTGGTTTTAATAAGAAATCTCGTAGaaaaaaaTCAAAGGACTGTGTAGA  1020
             ||| || |||||| ||   |  || || |||||| | |||||||||||||| | |||| |
Sbjct  373   CCT-AACGATGGTTGT---AG-AA-AA-TCTCGTCGGAAAAAATCAAAGGATTCTGTAAA  425

Query  1021  TGGTGGATCTAGAAGATCGTCACGACGAGTACGTGGATCTCA-AGTAGAATCTATAAGTG  1079
             |||||| |||| ||||||||||||||||| |||||||||||| |  ||||||||| | ||
Sbjct  426   TGGTGGGTCTACAAGATCGTCACGACGAGCACGTGGATCTCAGAC-AGAATCTATGATTG  484

Query  1080  ATTCTTCATCAACGTCTGATGCAGGAT  1106
             ||  ||||  |  ||||||||||||||
Sbjct  485   ATA-TTCA--AT-GTCTGATGCAGGAT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48225490005


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5