BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04000.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470377 jgi|Araly1|470377|fgenesh2_kg.1__331__AT1G04000.1 1136 0.0
> Ahg470377 jgi|Araly1|470377|fgenesh2_kg.1__331__AT1G04000.1
Length=886
Score = 1136 bits (615), Expect = 0.0
Identities = 805/892 (90%), Gaps = 32/892 (4%)
Strand=Plus/Plus
Query 148 TTTTTCACCCGATTATTTTGATTTGACTGTTTTACGACAGTCAATATTTCAATTTTATTA 207
|||||||||| |||| || |||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 TTTTTCACCCTATTA-TTCGATTTGACTGTTTTACAACAGTCAATATTTCAATTTTTTTA 59
Query 208 TTGGGTGCTGACGTGGCATGCATCCAATAGAGTATCACCATGAACACCAAAACGATGCGT 267
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 60 TTAGGTGCTGACGTGGCATGCATCCAATAGAGAATCCCCATGAACACCAAAACGATGCGT 119
Query 268 CTTCCCCCACGTCGCGTTCTAACGGCGGATAAGCGCAAAGAACGAGACGCCTTCATCTCC 327
||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 120 CTTCCCCCACGTCGCATTCTAACGGCGGATAAGCGCAAAGAAAGAGACGCCTGCCTCTCC 179
Query 328 TCCGTCACCGATAATCCGCCGGAAATCGCC------AAGTTT-CCCTCTCCGCCGCCTAA 380
|||||||||||||| ||||||||||||||| |||||| ||| | |||||| | ||
Sbjct 180 TCCGTCACCGATAAACCGCCGGAAATCGCCGTCCCCAAGTTTACCC-CACCGCCGGCGAA 238
Query 381 ACTTGTTCCTCCGCCGGTTAATCCCATTTCCAAGAAATCTTCAACCGCAGCAGCCGAGCC 440
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 239 TCTTGCTCCTCCGCCGGTTAATCCCATTTCCAGGAAATCTTCAATCGCAGCAGCCGAGCC 298
Query 441 GATCGGCTCGAACCAACTGATGTTAGCCGGTTATCTGAGCCACGAGTACCTCACCCAA-G 499
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
Sbjct 299 GGTCGGCTCGAACCAATTGATGTTAGCCGGTTATCTGAGCCACGAGTTCCTCACC-AACG 357
Query 500 GCACACTCTTCGGAGAGCAATGGAACCAGGCTCGAGCCCAAGCCGAGTCCAGTAA-GATA 558
||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | ||
Sbjct 358 GCACACTCTTCGGAGAGCAATGGAACCCGGCTCGAGCCCAAGCCGAGCCCAGGAAAG-TA 416
Query 559 AAGCCGAGCCATACTGTTGAGCCGGCTGAGGAATGTGAGCCGAAACGGAAGAGGTATAG- 617
||||||||||||| | |||||||| |||| ||| ||||||||||||||||||||||| |
Sbjct 417 AAGCCGAGCCATATTATTGAGCCGACTGAAGAAAGTGAGCCGAAACGGAAGAGGTAT-GT 475
Query 618 GGAGGTTGCTAATCTTCTCCGGTCAGATGGGGCCCAACTGCCCGGCATCGTCAATCCTGC 677
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 476 GGAGGTTGCTAATCTTCTCCGGTCAGACGGGGCCCATCTACCCGGCATCGTCAATCCTGC 535
Query 678 CCAGCTTGCCCGATTTCTCAAACTGTGATCGGCGTAATCCGGTGTCCACGTGGAGACAGA 737
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 536 CCAGCTTGCCCGGTTTCTCAAACTGTGATCGGCGTAATCCAGTGTCCACGTGGAGATAGA 595
Query 738 TCATTGGTCTGTCGTCCGGCAAGCGAGACAGCCTTAAAACCGAAACCTTC---TTC-TC- 792
|||||||| |||| ||||||||||||||||| ||||||||| ||||||| ||| ||
Sbjct 596 TCATTGGTTTGTCACCCGGCAAGCGAGACAGCGTTAAAACCGGAACCTTCCCCTTCGTCG 655
Query 793 TCTCt-t-tttttttcaaatgttttttt-AGAATCCTCTCTGTAAAGCTGACTCGCTCGC 849
||||| | |||||||||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct 656 TCTCTCTCTTTTTTTCAAATATTTTTTTTA-AATCCTCTCTGTAAAGCTGACTCTCTCGC 714
Query 850 TCTCTCTTCTCATCATCGTCTTCCTCGGAAATCGACTGAGAAAATTTAGGGTTTGTTGTT 909
||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 715 TCTCTCTTCTCTTCATCGTCTTCCTCAGAAATCAATTGAGAAAATTTAGGGTTTGTTGTT 774
Query 910 GAGGTAGATGCTCCTCTTTTGTACATCAGAAATATCAATTAGCCAATGGATTATGTTTTC 969
|| ||||||| || | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 GAAGTAGATGTTCTTGTTTTGTACATCAGAAATATCAATTAGCCAATGGATTATATTTTC 834
Query 970 AGA-T----CAG-CAAAATTGAACCCTTTTCTC-T-GTGTGTATGGATTTTG 1013
| | | ||| |||| || |||||||||||| | ||||||||||||||||
Sbjct 835 AAAATTGAACAGTCAAAGTTTAACCCTTTTCTCATTGTGTGTATGGATTTTG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5