BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04030.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333726 jgi|Araly1|333726|fgenesh1_pg.C_scaffold_1000291 1901 0.0
Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1 274 2e-72
Ahg948737 jgi|Araly1|948737|scaffold_800624.1 130 4e-29
> Ahg333726 jgi|Araly1|333726|fgenesh1_pg.C_scaffold_1000291
Length=1305
Score = 1901 bits (1029), Expect = 0.0
Identities = 1227/1319 (93%), Gaps = 28/1319 (2%)
Strand=Plus/Plus
Query 215 ATGGGTTGCTTTTCGGGTTGCTTCGGTGGACGGAAGAATCGCCGGCGTCAGAGACGCAGA 274
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1 ATGGGTTGCTTTTCGGGTTGCTTCGGTGGTCGGAAGAATCGCCGGCGTCAGAGACGCAAA 60
Query 275 GATTCCGATGAAGCTAGAGATAACAAACTCTCTGTGGAAACTGCAGAACCTCATCATCTG 334
||||||||| |||||||||||||||||||| ||| |||| ||||| || | | | ||
Sbjct 61 GATTCCGATCAAGCTAGAGATAACAAACTCGCTGCGGAATCTGCA-AA----A-C-T-TG 112
Query 335 AATGATAGAGTCCACATTGTTGAGGAGATCCCGAAAGCTTCTGTGATTCCAATCACTGAA 394
||||||||||||||| |||||| || ||||||||| |||||||||||||||| || ||
Sbjct 113 -ATGATAGAGTCCACACTGTTGACGAAATCCCGAAATCTTCTGTGATTCCAATTACCGAG 171
Query 395 ATTTGTGACGAGGCTGAAGAGAAATGCAGTCCAAGCACTATTTCTAGGAAGAGAGTCACT 454
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 172 ATTTGTGACGAGGCTGAAGAGAAATGCAGTCCAAGCTCTATTACTAAGAAGAGAGTCACT 231
Query 455 TTTGACTCCAAAGTCAAAACCTATGAACACGTTGTTTCAGAAGAATCTGTTGAACTCTCA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTTGACTCCAAAGTCAAAACCTATGAACACGTTGTTTCAGAAGAATCTGTTGAACTCTCA 291
Query 515 GAAGAGAAGAACGAAGAGGTTGAATCCGAAAAGAGGTCATTAAAGTCAAGCAAGACTGAT 574
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 292 GAAGAGAAGAACGAAGAGGTTGAATCCGAAAAGAGGTCACTGAAGTCAAGCAAGACTGAT 351
Query 575 G---A-------TC--AGATCATTGAGGTTGCCTCCAACTCCTCAGGGTCGTATCCTGAA 622
| | || ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 352 GATCAGTCTTCTTCTGAGATCATTGAGGTTGCCTCAAACTCCTCAGGGTCGTATCCTTCA 411
Query 623 AACCACAGATACAAGAATTGCAGAGAAAGTGATGATGACATAGAGGAGGATGAGTTTGAC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 AACCACAGATACAAGAATTGCAGAGAAAGTGATGATGACATAGAGGAGGATGATTTTGAC 471
Query 683 TGCAGTGACAGCGATCTAGATGAAGATGAAGAATATTACAGTGATGTTGGATTTAGTGAG 742
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 472 TGCAGTGACAGTGATCTAGATGAAGATGAAGAGTATTACAGTGATATTGGATTTAGTGAG 531
Query 743 GATAGCTTGCATAACCCAACCAAGGAA-GTTTATACTCAAGATATTGGGGATAAAACAGA 801
||||||||||||| ||||||||| || ||||||||| |||| |||||||||||||||||
Sbjct 532 GATAGCTTGCATATCCCAACCAA-AAAGGTTTATACTGAAGAGATTGGGGATAAAACAGA 590
Query 802 GGAGATTGATTCAAAGCTGAGAAGGTCTAACGAGACTGTTAGAGATGGAAACCACTATGA 861
||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 591 GGAGACTGATGCAAAGCTGAGAAACTCTAACGAGAGTGTTAGAGATGGAAACCACTATGA 650
Query 862 TGGCCAAGGAGTACTTAACCCTGTTGAGAATCTTACTCAGTGGAAATCCGCTAAATCCAA 921
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 651 TGGCCAAGGAGTACTTAACCCGGTTGAGAATCTCACTCAGTGGAAATCCGCTAAATCCAA 710
Query 922 AGGGAGAACAAAGCAGAAACAGTCTCAAAAGGAGAACTCTAACTTCATCGCAGATCAAGA 981
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 711 AGGGAGGACAATGCAGAAACAGTCTCAAAAGGAGAACTCTAACTTCATTGCAGATCAAGA 770
Query 982 AGAAAAAAGGGATTCCTCTTCTTTCGGTACAGACCCTCAGATTGATGATATAACACTCAG 1041
||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 771 AGAAAGAAGGGATTCCTCTTCTTTTGGCACAGACTCTCAGATTGATGATATAACACTCAG 830
Query 1042 CGTCAAACCGAAATGCAGAATTGAACCCAAGAAACTGCGAAACCAAGAACTGGCCGTTGA 1101
| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 CTTCAAACCAAAATGCAGAATTGAACCCAAGAAACTGAGAAACCAAGAACTGGCCGTTGA 890
Query 1102 TGCTAGCCTTTCAACATGGTTATCAACATCTGAGTCTGGTAGTGAATGCAACAGCGCCTC 1161
||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||| |||
Sbjct 891 TGCTAGCCTTTCATCATGGTTGTCAACATCTGAGTCCGGTAGCGAATGCAACAGCGTCTC 950
Query 1162 TATGTATACCT-TAACACCCGAGAAACTCAAGTCTACCAGCTGCTACTCAAAACCGCTTA 1220
|| |||||||| | ||||||||||||| ||||||| |||||||||||||||| | |||
Sbjct 951 TAGGTATACCTCT-ACACCCGAGAAACACAAGTCT---AGCTGCTACTCAAAACTGGTTA 1006
Query 1221 GAATCAATCATGACGATAGACCTGTATTATGCGCATTGACATTGGAGGATATCAAACAGT 1280
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1007 AAATCAACCATGACGATAGACCTGTACTATGCGCATTGACATTGGAGGATATCAAACAGT 1066
Query 1281 TCTCGGCTACATCTACGCCAAGGAAATCACCGAGCAAAAGCCCTGATGAGACACCTATTA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TCTCGGCTACATCTACGCCAAGGAAATCACCGAGCAAAAGCCCTGATGAGACACCTATTA 1126
Query 1341 TAGGCACAGTTGGTGGTTACTGGGGTAATCGCTCAAAGGCAATAGATTGCGGCTCTGCAT 1400
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1127 TAGGCACAGTTGGTGGTTACTGGGGTAATCACTCAAAGGCAATAGATTGCGGCTCTGCAT 1186
Query 1401 CTTCATTCAAGGGAATACCAAACACCAGTAGCAAGTACAGAGAGGATAAGAGCGTAAATT 1460
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1187 CTTCATTCAAGGGAATACCAAACACCACCAGCAAGTACAAAGAGGATAAGAGCGTAAATT 1246
Query 1461 GGCATTCAACACCATTTGAGGCAAGACTGGAGAAAGCTTTGAACAACATAGACAAATAA 1519
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1247 GGCATTCAACTCCATTTGAGGCCAGACTGGAGAAAGCTTTGAACAACATAGACAAATAA 1305
> Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1
Length=1066
Score = 274 bits (148), Expect = 2e-72
Identities = 168/178 (94%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 1521 GGCGACATAGTAGATGGAGTTAGGGAGCTTGAAGGTTCTCCTGGGAAGAGGACAGCCTGC 1580
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 856 GGCGACATAGTAGATGGAGTTAGGGAGCTTGAAGGTTCTCTTAGGAAGAGGACAACCTGC 797
Query 1581 AAAGCTACTCCATTGGTCACCCATCACTCCCCAGACTCTGTAACCAAGACTCATTAGCCA 1640
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 796 AAAGCTGCTCCATTGGTCTCCCATCACTCCCCAAACTCTGTAACCAAGACTCATCAGCCA 737
Query 1641 TTTTCTCTTCTCTGACTTGTATTGTTTCACTTCCTTTTGCTGATCTTCTAGCCCCCTG 1698
| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 736 TGTTCTCTTTTCTGACTTGTATTGTTTCACTTCCTTTTGCTCATCTTCTAGCCCCCTG 679
> Ahg948737 jgi|Araly1|948737|scaffold_800624.1
Length=868
Score = 130 bits (70), Expect = 4e-29
Identities = 106/123 (86%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 1521 GGCGACATAGTAGATGGAGTTAGGGAGCTTGAAGGTTCTCCTGGGAAGAGGACAGCCTGC 1580
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
Sbjct 837 GGCGACATAGTAGATGGAGTTAGGGAGCTTGAAGGTTCTCTTGGGAACTGGACAACCAG- 779
Query 1581 A-AAGCTACTCCATTG-GTCACCCATCACTCCCCAGACTCTGTAACCAAGACTCATTAGC 1638
| ||||| ||||||| | |||||||||||||||| |||| ||| |||||||| | |||
Sbjct 778 AGAAGCTGTTCCATTGTG-CACCCATCACTCCCCAAACTCGGTACCCAAGACTTGTAAGC 720
Query 1639 CAT 1641
|||
Sbjct 719 CAT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5