BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04040.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1 1567 0.0
Ahg948737 jgi|Araly1|948737|scaffold_800624.1 418 4e-116
> Ahg470382 jgi|Araly1|470382|fgenesh2_kg.1__336__AT1G04040.1
Length=1066
Score = 1567 bits (848), Expect = 0.0
Identities = 1001/1073 (93%), Gaps = 18/1073 (2%)
Strand=Plus/Plus
Query 1 ACACTTGTGATCAAAATCTCAAGATCCAAAACTCTTCTTTCAAACATGGACCGAACCATG 60
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1 ACACTTGTGATCAAAATCTCAAGATCCAAAA-AC-TCTTTCAAACATGGACCGAACCATG 58
Query 61 TTTCTTTCCCTGACAATAGCCTCACTCTTGGTCGGAGTCGTCTCAGCTGGTGACTGGAAC 120
||||||||| || || ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 59 TTTCTTTCCTTGGCACTAGCCTCACTCTTTGTCGGAGTCGTCTCCGCTGGTGACTGGAAC 118
Query 121 ATCTTGAACCAACTCAGAGGACTCGGCTCATCGTCAAGCCAAAATGGTATCGTTTCTAAA 180
|||||||||||||||| ||||||||| || || ||||||||||| |||||||||||||||
Sbjct 119 ATCTTGAACCAACTCAAAGGACTCGGTTCGTCCTCAAGCCAAAACGGTATCGTTTCTAAA 178
Query 181 GGTATCAAGACGGACCTGAAAGGATACTGTGAAAGCTGGAGGATCAACGTGGAAGTTCAC 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGGATCAAGACGGACCTGAAAGGATACTGTGAAAGCTGGAGGATCAACGTGGAAGTTCAC 238
Query 241 AACATCAGAAAGTTCGATGTGGTGCCTCAAGAGTGTGTATCGCACATTAAGGATTACATG 300
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 239 AACATCAGAAACTTCGATGTGGTGCCTCAAGAGTGTGTATCTCACATCGAGGATTACATG 298
Query 301 ACGTCATCGCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTCATTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACGTCATCGCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTCATTTC 358
Query 361 GGGAGCATGTGCTGTAGCAAGTCTAAGTGTGACGGCATGGACGCTTGGATCTTTGATATC 420
|| || ||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 359 GGAAGTATGTGTTGTAGCAAGACTAAGTGTGATGGCATGGACGCTTGGATCTTTGATGTC 418
Query 421 GATGACACGCTTCTCTCTACCATCCCTTACCACAAGAAAAATGGCTTCTTCGGAGGAGAG 480
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 GATGACACACTTCTCTCTACCATACCTTACCACAAGAAAAATGGCTTCTTCGGAGGAGAG 478
Query 481 AAATTGAACTCAACGAAATTCGAGGATTGGAT-ACAGAAGAAGAAAGCACCAGCAGTGCC 539
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 479 AAATTGAACTCAACGAAATTCGAGGATTGGATGA-AGAAGAAGAAAGCACCAGCAGTGCC 537
Query 540 ACACATGAAGAAATTGTACCACGACATCAGAGAAAGAGGCATTAAGATCTTCTTGATCTC 599
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 538 ACACATGAAGAAATTGTACCATGAGATCAGAGAAAGAGGCATTAAGATCTTCTTGATCTC 597
Query 600 TTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTA 657
Query 660 TGGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATCAGCAAAAGGAAGTGAAACAATA 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 TGGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATGAGCAAAAGGAAGTGAAACAATA 717
Query 720 CAAGTCAGAGAAGAGAAAATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGATGGG 779
||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||||
Sbjct 718 CAAGTCAGAAAAGAGAACATGGCTGATGAGTCTTGGTTACAGAGTTTGGGGAGTGATGGG 777
Query 780 TGACCAATGGAGTAGCTTTGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCTCCCTAA 839
||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 778 AGACCAATGGAGCAGCTTTGCAGGTTGTCCTCTTCCTAAGAGAACCTTCAAGCTCCCTAA 837
Query 840 CTCCATCTACTATGTCGCCTGATCAAAACCAAACACAAAACTTTGATTTAGCTTCAAACA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 838 CTCCATCTACTATGTCGCCTGATCAAAACCAAACACAAAACTTTGATTTAGCTTCTTTGA 897
Query 900 AAAAGAAGAATCCACGAATAAGAGAGAGCTGTTTTGAATCTGTTTCTT-GTTTATTTTCC 958
| |||||||||| ||||||||||||||| ||||||| ||||||| || |||| | ||||
Sbjct 898 ACAAGAAGAATCTGCGAATAAGAGAGAGCAGTTTTGATTCTGTTTTTTTGTTT-TCTTCC 956
Query 959 CCTTTT-TCGTGTCATATT-ATATTGAGAGACTTAT-GCATC-CAAAAGAACAAACAAAT 1014
|||||| | ||||||| || ||||| |||||| ||| | || |||| ||||||||||||
Sbjct 957 CCTTTTCT-GTGTCATTTTTATATTAAGAGACGTATTG-ATAACAAA-GAACAAACAAAT 1013
Query 1015 -G---G-TTATATGTAACAGAGAGAAATCAAATCAAAATCACACATTATCAAC 1062
| | ||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1014 AGAATGATTATACGTAACAGAGAGAAATCAAATCAAAATCACACAGTACCAAC 1066
> Ahg948737 jgi|Araly1|948737|scaffold_800624.1
Length=868
Score = 418 bits (226), Expect = 4e-116
Identities = 544/693 (78%), Gaps = 40/693 (6%)
Strand=Plus/Plus
Query 194 ACCTGAAA-GGATACTGTGAAAGCTGGAGGA-TCAACGTGGAAG-TTCACAACATCAGAA 250
|||| ||| |||||||| |||||||||| || ||||||||| || || ||||||||||
Sbjct 173 ACCT-AAACGGATACTGCGAAAGCTGGA-GAGTCAACGTGG-AGCTTAACAACATCAGGG 229
Query 251 AGTTCGAT-GTGGTGCCTCAAGAGTGTGTATCGCACAT-TAAGGATTACATGACGTCATC 308
| || | || ||||| || || ||||||| | | | || | |||||||| |||||
Sbjct 230 ACTT-TTTGGTTGTGCCACAGGAATGTGTATGGTTCGTCCAA-AAGTACATGACCTCATC 287
Query 309 GCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTC-ATTTCGG--GAG 365
|| ||| |||||||||||| |||| |||||||||| | || || || | |||| |
Sbjct 288 TCAATACGAGGATGACGTGGAGAGAGCCGTTGATGAAGCCA-TCCTCTACCTCGGAAAAA 346
Query 366 CATG-TGCTGTAGCAAGTCTAAGTGTGACGGCATGGACGCTTGGATCTTTGATATCGATG 424
| || ||| | | ||| || || || |||||||| |||||||||||||| || ||||
Sbjct 347 CTTGTTGC-G-A-AAAGAAGAAATGCGATGGCATGGATGCTTGGATCTTTGACATTGATG 403
Query 425 ACACGCTTCTCTCTACCATCCCTTACCACAAGAAAAATGGCT-TCTTCGGAGGAGAGAAA 483
|||| |||||||| ||||| ||||||||||||| || |||| | ||||| || ||| ||
Sbjct 404 ACACTCTTCTCTCCACCATTCCTTACCACAAGAGCAACGGCTGT-TTCGGTGGTGAGCAA 462
Query 484 TTGAACTCAACGAAATTCGAGGATTGGATACAGAA--GAAG-AAAGCACCAGCAGTGCCA 540
|||||| | || || |||||||| ||| | | || | | || |||||||| || |||
Sbjct 463 TTGAACACGACCAAGTTCGAGGAATGG-CA-AAAATCG-GGCAAGGCACCAGCGGTTCCA 519
Query 541 CACATGAAGAAATTGTACCACGACATCAGAGAAAGAGGCATT-AAGATCTTCTTGATCTC 599
||||| ||| |||||||| || |||||||| ||||| || |||||||| ||||||||
Sbjct 520 AACATGGTGAAGTTGTACCATGAGATCAGAGAGAGAGG-TTTCAAGATCTTTTTGATCTC 578
Query 600 TTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTA 659
||| || ||||| |||||||| |||||||||||||| ||||| ||| ||||||||||| |
Sbjct 579 TTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGAAAACCTTATCGAAGCCGGTTACCA 638
Query 660 TGGCTGGTCCAACCTAATGCTCAGGGG-GCTAGAAGATCAGCAA-AAGGA-AGTGAAACA 716
|||||||| ||||| | |||||||| | ||| ||| || || || || |||| ||
Sbjct 639 CGGCTGGTCTAACCTCCTTCTCAGGGGAG-AAGATGATGAG-AAGAA-GAGTGTGAGCCA 695
Query 717 ATAC-AAGTCAGAGAAGAGAAAATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGA 775
|||| ||| |||| ||| |||||| | |||||||| ||| |||| ||||||||||
Sbjct 696 ATACAAAG-CAGATTTGAGGTCATGGCTTACAAGTCTTGGGTACCGAGTTTGGGGAGTGA 754
Query 776 TGGGTGAC-CAATGGAGTAGCTT-TGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCT 833
|||||| | ||||||| ||||| | | || ||||| |||||| |||||||||||||||
Sbjct 755 TGGGTG-CACAATGGAACAGCTTCT-CTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGCT 812
Query 834 CCCTAACTCCATCTACTATGTCGCCTGATCAAA 866
|||||||||||||||||||||||||||||||||
Sbjct 813 CCCTAACTCCATCTACTATGTCGCCTGATCAAA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5