BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04050.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value Ahg470383 jgi|Araly1|470383|fgenesh2_kg.1__337__AT1G04050.1 2737 0.0 Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 56.5 1e-06 Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 52.8 1e-05 > Ahg470383 jgi|Araly1|470383|fgenesh2_kg.1__337__AT1G04050.1 Length=2584 Score = 2737 bits (1482), Expect = 0.0 Identities = 1814/1971 (92%), Gaps = 36/1971 (2%) Strand=Plus/Plus Query 501 AACAACGAGGATCTCAAGACACAGCCT------GAAGAGGAAGATGAAGATGATGGTGTG 554 ||||| ||||||| |||||| |||||| |||||||||||||||||||||| |||| Sbjct 480 AACAAAGAGGATCCCAAGACTCAGCCTGAAGAGGAAGAGGAAGATGAAGATGATGATGTG 539 Query 555 ACTGAATTACCTCCGTTAAAGAGGTACGTACGCAGAAATGGTGAACGAGGGTTGGCAATG 614 ||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||| Sbjct 540 ACTGAATTACCTCCGTTAAAGAGGTACTTACGCAGAAGTGGTGAAAGAGGATTGGCAATG 599 Query 615 ACTGTTTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCTTGTCAATGGAGCCCGAAGAA 674 ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 600 ACTGTCTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCACGTCAATGGAGCCCAAAGGA 659 Query 675 GTACCACCAATGGTTCTATTGCCAGCTCATCCTATGGAA-ACG--AAGGTTTCTGAAGCC 731 |||||||||||| ||||| | |||||| ||||||| || | | |||| ||||| ||| Sbjct 660 GTACCACCAATGCTTCTAATCCCAGCTGATCCTATAAAAGATGAAAAGGACTCTGAGGCC 719 Query 732 AG-TGCACTTGTTATCCTCAATGATGAACCCAATATCGATCATAAGCCTGTGATTTCAGA 790 | ||||||| |||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct 720 -GATGCACTTATTATCCTCAATGATGAGCCCAATATAGATCATAAGTCTGTGATTT---- 774 Query 791 TACAGGAAACTGTTCAGCTCCCATGCTTGAGATGGGGAAATCAAATATACATGTGCAAGA 850 | |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| Sbjct 775 T--AGGAAACTGTTCAGCTCCCATGCTTGAGATCGAGAAATCAAATATACATGTGGAAGA 832 Query 851 ATGGGATTGGGAAACCAAAGATATTCTCAATGATACTACTGCCATGGATGTGTCTCCTTC 910 | ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| | | Sbjct 833 ACGGGATAGGGAAACCAAAGATAATCTCAATGATACTATTGCCATGGATGTGTCT-C--C 889 Query 911 TTCAGCTATTGGGGAATCAAGTGAGCATAAGGTTGCTGCTGCTTCAGTTGAATTAGCTTC 970 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 890 TTCAGCTATTGGGGAATCTAGTGAGCATAAGGTTGCCGCTGCTTCAGTTGAATTAGCTTC 949 Query 971 TTCGACTTCTGGTGAGGCAAAGATTTGTCTAAGTTTCGCGCCTGCAACTGGAGAAACAAC 1030 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 950 TTCGACTTCTGGTGAGGCAAAGATTTATCTAAGTTTTGCGCCTGCAACTGGAGAAACAAC 1009 Query 1031 GAATTTGCATTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGCCTCAA 1090 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1010 GAATTTGTGTTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGTCTCAA 1069 Query 1091 GTCGTACAAAATTGTTCACCCCGAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1150 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1070 GTCGTACAAAATTGTTCATCCCAAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1129 Query 1151 CTGTTACATAGACTTGGCAAAGAATTCAACCAGCCAGTTGCTTGAAACAGAAACCGTATG 1210 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| Sbjct 1130 CTGTTACATAGACTTGGCAAAGAATTCAACCAGGCAGTCACTTGAAACAGAAACCATATG 1189 Query 1211 TGACATGAGTAAGGCGGGTGATGAAAGTGGTGCAGTTGGCATTTCGATGCCGTTGGTGGT 1270 |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1190 TGACATAAGTAAGGCGGGTGATGAAAGTGGTGCAGCTGGCATTTCGATGGGGTTGGTGGT 1249 Query 1271 TGTTCCTGAATGCGAGATCTCGGGAGATGGCTGGAAAGCAATTAGCAACATGAAGGACAT 1330 ||||||||||||||||||||| | || ||||| || |||||||||||||||||||||||| Sbjct 1250 TGTTCCTGAATGCGAGATCTCTGAAGGTGGCTTGAGAGCAATTAGCAACATGAAGGACAT 1309 Query 1331 TACGGCTGGTGAAGAAAACGTTGAGATTCCATGGGTGAATGAGATCAACGAGAAGGTTCC 1390 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1310 TACGGCTGGTGAAGAAAACATTGAGATTCCATGGGTGAATGAGATCAACGACAAGGTTCC 1369 Query 1391 TTCCCGTTTCCGTTACATGCCTCACAGCTTTGTGTTTCAAGATGCTCCAGTGATATTCTC 1450 ||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| Sbjct 1370 TTCATGTTTCCGTTACATGCCTCATAGCTTTGTATTTCAAGATGCTCCAGTGAAATTCTC 1429 Query 1451 GCTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCACTTCTTGTATCGAAGACTGCCTGGC 1510 ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1430 ACTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCTTTTCCTGTATCGAAGATTGCCTGGC 1489 Query 1511 TTCAGAAATGTCGTGCAATTGTGCAATTGGTGTTGATAACGGGTTTGCGTACACATTAGA 1570 ||||||||||||||||||||||||||||| | ||||||||| |||||||||| || || | Sbjct 1490 TTCAGAAATGTCGTGCAATTGTGCAATTGCTTTTGATAACGTGTTTGCGTACTCAGTAAA 1549 Query 1571 TGGGTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCTCGTGATCAACGGAA 1630 ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1550 TGGCTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCCCGCGATCAACGGAA 1609 Query 1631 ACAGGTGCTGCGATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1690 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 ACAGGTGCTGCAATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1669 Query 1691 GGAACCATGTAAAGGGCATCTAAAGAGGGGAGCCATTAAAGAGTGTTGGTTCAAATGTGG 1750 ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1670 GGAACCATGCAAAGGGCATCTGAAGAGGGGAGCCATTAAAGAGTGTTGGATCAAATGTGG 1729 Query 1751 TTGCACTAAGAGATGCGGTAACCGAGTGGTGCAAAGAGGAATGCACAACAAATTACAGGT 1810 |||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||| Sbjct 1730 TTGCACTAAGAGATGCGGTAACCGAGTGATACAAAGAGGAATACAAAACAAATTACAGGT 1789 Query 1811 GTTTTTCACGCCAAATGGGAAAGGCTGGGGACTTAGGACTTTAGAGAAACTGCCTAAAGG 1870 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 1790 GTTTTTCACGCCAAATGGGAAAGGCTGGGGCCTTAGGACGTTGGAGAAACTGCCTAAAGG 1849 Query 1871 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1850 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1909 Query 1931 CTTTGAAGATAAACCCACTT-TGCCTGTGATATTGGATGCACATTGGGGTTCTGAAGAAA 1989 |||||||| ||||| ||||| | ||| | ||||||||||||||||||||||||||||| | Sbjct 1910 CTTTGAAGGTAAACTCACTTGT-CCTTTTATATTGGATGCACATTGGGGTTCTGAAGAGA 1968 Query 1990 GGTTAGAGGGTGACAAAGCTCTGTGTCTTGATGGGATGTTTTATGGAAATATCTCAAGGT 2049 ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||| ||| Sbjct 1969 GGTTAGAGGATGACAAAGCTCTGTGTCTTGATGGGACGCATTATGGAAATATATCAGGGT 2028 Query 2050 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATTCCAGTTCAAGTCGAGACTC 2109 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2029 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATCCCAGTTCAAGTCGAGACTC 2088 Query 2110 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGAGACATCGAGGCAATGGAGG 2169 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2089 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGGGACATCGAGGCAATGGAGG 2148 Query 2170 AACTCGCATGGGATTATGGCATTGACTTCAACGATAATGACTCTCTAATGAAACCCTTTG 2229 ||||| |||||||||||||| |||||||||||||| |||| ||||| ||||||||||||| Sbjct 2149 AACTCACATGGGATTATGGCGTTGACTTCAACGATGATGAATCTCTGATGAAACCCTTTG 2208 Query 2230 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAACGAAGACCATGCAGA 2289 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 2209 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAAAGAAGATCATGCAGA 2268 Query 2290 TTTTGAACAAAGCATGAGAGGCTAGTGAAGAAGAAAAGACGTGATGAGACCCTCTGTTTT 2349 || |||||||||||||||||| | |||||||||||||| | ||||||||||| ||||| Sbjct 2269 TTATGAACAAAGCATGAGAGGAGAATGAAGAAGAAAAGA--T-ATGAGACCCTCCGTTTT 2325 Query 2350 TTGGTGAATGGGACTCTC--------CAAACCGGTCCGGGTTAATAGATTTTGTAGGTTG 2401 ||| |||||||||||||| ||||||| ||| ||| ||| |||||||||||||| Sbjct 2326 TTG-TGAATGGGACTCTCTTAATTAACAAACCGTTCCCGGTCAATTGATTTTGTAGGTTG 2384 Query 2402 GGaaaaaaaGAAGCTTAAGTTGGGTATTGTGTGATCAAACTCTGTATAGCT 2452 | |||| |||| ||| ||||||| ||||||| ||||||||||||||||||| Sbjct 2385 G-AAAACAAGATGCT-AAGTTGGTTATTGTGAGATCAAACTCTGTATAGCT 2433 Score = 494 bits (267), Expect = 2e-138 Identities = 375/423 (89%), Gaps = 24/423 (6%) Strand=Plus/Plus Query 47 AGTTTTTTGAGGTTGGTGAGTGA-TTCAGCTTTGTTATTGCAGAAACTT-GTTGAAAATG 104 |||||| |||||| ||||||||| || |||||||| |||||||||| || || ||||||| Sbjct 25 AGTTTTATGAGGTGGGTGAGTGATTTTAGCTTTGTCATTGCAGAAA-TTCGTCGAAAATG 83 Query 105 GCACCGAATCTTAGGATTAAGAAAGCCTGTGACGCGATGAAGCTTTTAGGAATATCAGAG 164 |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 84 GCACCGAATCCTAAGATTAAGAAAGCCTGTGACGCTATGAAGCTTTTAGGAATATCAGAG 143 Query 165 ACGAAAACAAGGGCCTTTCTCAGGAAACTTCTCAAGACCTATGAGAATAACTGGGATTTC 224 ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| Sbjct 144 ACGAAAACAAGGGCCTTTCTCAGAAAACTTCTCAAGGCCTATGATAATAACTGGGATTTC 203 Query 225 ATTGAAGAGGATGCTTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 284 |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 ATTGAAGATGAAGCCTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 263 Query 285 TCCACTgaaaaaaataagaaggaagaggaaaagaagaagaaggaagaggaaaagaagtcc 344 ||||||||||| | | |||| || || || || | ||| |||| | | ||| Sbjct 264 TCCACTGAAAAGA-T--GAAG-AA-AG-AA--GA-G--GAA--AAGA--A---G---TCC 302 Query 345 agaagTGTAGCAACGAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAA 404 | || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 AAAAATGTAGCAACCAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAG 362 Query 405 GAGGACGATATGGATGAAGATGAATTTCCATTGAAAAGGAGGTTGCGCAGTAGACGTGGA 464 |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||| Sbjct 363 GAGGACGATATGGATGAAGATGAAACTCCATTGAAAAGGAGGTTGCGTAGTAAACGCGGA 422 Query 465 AGA 467 ||| Sbjct 423 AGA 425 > Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 Length=1171 Score = 56.5 bits (30), Expect = 1e-06 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 467 AGCTTCATCTTCATCTTCATCTTCATCTTC 496 |||||||||||||||||||||||||||||| Sbjct 358 AGCTTCATCTTCATCTTCATCTTCATCTTC 329 > Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 Length=1705 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496 |||||||||||||||||||||||||||| Sbjct 1424 CTTCATCTTCATCTTCATCTTCATCTTC 1397 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496 |||||||||||||||||||||||||||| Sbjct 1430 CTTCATCTTCATCTTCATCTTCATCTTC 1403 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496 |||||||||||||||||||||||||||| Sbjct 1436 CTTCATCTTCATCTTCATCTTCATCTTC 1409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100901059005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5