BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04050.1
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470383 jgi|Araly1|470383|fgenesh2_kg.1__337__AT1G04050.1 2737 0.0
Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 56.5 1e-06
Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 52.8 1e-05
> Ahg470383 jgi|Araly1|470383|fgenesh2_kg.1__337__AT1G04050.1
Length=2584
Score = 2737 bits (1482), Expect = 0.0
Identities = 1814/1971 (92%), Gaps = 36/1971 (2%)
Strand=Plus/Plus
Query 501 AACAACGAGGATCTCAAGACACAGCCT------GAAGAGGAAGATGAAGATGATGGTGTG 554
||||| ||||||| |||||| |||||| |||||||||||||||||||||| ||||
Sbjct 480 AACAAAGAGGATCCCAAGACTCAGCCTGAAGAGGAAGAGGAAGATGAAGATGATGATGTG 539
Query 555 ACTGAATTACCTCCGTTAAAGAGGTACGTACGCAGAAATGGTGAACGAGGGTTGGCAATG 614
||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||
Sbjct 540 ACTGAATTACCTCCGTTAAAGAGGTACTTACGCAGAAGTGGTGAAAGAGGATTGGCAATG 599
Query 615 ACTGTTTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCTTGTCAATGGAGCCCGAAGAA 674
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 600 ACTGTCTATAACAATGCAAGTCCTAGCTCCAGCAGTCGCACGTCAATGGAGCCCAAAGGA 659
Query 675 GTACCACCAATGGTTCTATTGCCAGCTCATCCTATGGAA-ACG--AAGGTTTCTGAAGCC 731
|||||||||||| ||||| | |||||| ||||||| || | | |||| ||||| |||
Sbjct 660 GTACCACCAATGCTTCTAATCCCAGCTGATCCTATAAAAGATGAAAAGGACTCTGAGGCC 719
Query 732 AG-TGCACTTGTTATCCTCAATGATGAACCCAATATCGATCATAAGCCTGTGATTTCAGA 790
| ||||||| |||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 720 -GATGCACTTATTATCCTCAATGATGAGCCCAATATAGATCATAAGTCTGTGATTT---- 774
Query 791 TACAGGAAACTGTTCAGCTCCCATGCTTGAGATGGGGAAATCAAATATACATGTGCAAGA 850
| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 775 T--AGGAAACTGTTCAGCTCCCATGCTTGAGATCGAGAAATCAAATATACATGTGGAAGA 832
Query 851 ATGGGATTGGGAAACCAAAGATATTCTCAATGATACTACTGCCATGGATGTGTCTCCTTC 910
| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| | |
Sbjct 833 ACGGGATAGGGAAACCAAAGATAATCTCAATGATACTATTGCCATGGATGTGTCT-C--C 889
Query 911 TTCAGCTATTGGGGAATCAAGTGAGCATAAGGTTGCTGCTGCTTCAGTTGAATTAGCTTC 970
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 890 TTCAGCTATTGGGGAATCTAGTGAGCATAAGGTTGCCGCTGCTTCAGTTGAATTAGCTTC 949
Query 971 TTCGACTTCTGGTGAGGCAAAGATTTGTCTAAGTTTCGCGCCTGCAACTGGAGAAACAAC 1030
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 950 TTCGACTTCTGGTGAGGCAAAGATTTATCTAAGTTTTGCGCCTGCAACTGGAGAAACAAC 1009
Query 1031 GAATTTGCATTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGCCTCAA 1090
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1010 GAATTTGTGTTTGCCTTCTATGGAGGATCTTCGGAGAGCAATGGAGGAGAAGTGTCTCAA 1069
Query 1091 GTCGTACAAAATTGTTCACCCCGAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1150
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1070 GTCGTACAAAATTGTTCATCCCAAGTTTTCGGTCCTTGGGTTCATGAAGGACATGTGTAG 1129
Query 1151 CTGTTACATAGACTTGGCAAAGAATTCAACCAGCCAGTTGCTTGAAACAGAAACCGTATG 1210
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 1130 CTGTTACATAGACTTGGCAAAGAATTCAACCAGGCAGTCACTTGAAACAGAAACCATATG 1189
Query 1211 TGACATGAGTAAGGCGGGTGATGAAAGTGGTGCAGTTGGCATTTCGATGCCGTTGGTGGT 1270
|||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1190 TGACATAAGTAAGGCGGGTGATGAAAGTGGTGCAGCTGGCATTTCGATGGGGTTGGTGGT 1249
Query 1271 TGTTCCTGAATGCGAGATCTCGGGAGATGGCTGGAAAGCAATTAGCAACATGAAGGACAT 1330
||||||||||||||||||||| | || ||||| || ||||||||||||||||||||||||
Sbjct 1250 TGTTCCTGAATGCGAGATCTCTGAAGGTGGCTTGAGAGCAATTAGCAACATGAAGGACAT 1309
Query 1331 TACGGCTGGTGAAGAAAACGTTGAGATTCCATGGGTGAATGAGATCAACGAGAAGGTTCC 1390
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 TACGGCTGGTGAAGAAAACATTGAGATTCCATGGGTGAATGAGATCAACGACAAGGTTCC 1369
Query 1391 TTCCCGTTTCCGTTACATGCCTCACAGCTTTGTGTTTCAAGATGCTCCAGTGATATTCTC 1450
||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 1370 TTCATGTTTCCGTTACATGCCTCATAGCTTTGTATTTCAAGATGCTCCAGTGAAATTCTC 1429
Query 1451 GCTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCACTTCTTGTATCGAAGACTGCCTGGC 1510
||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1430 ACTCTCAAGTTTCTCTGATGAGCAAAGCTGCTCCTTTTCCTGTATCGAAGATTGCCTGGC 1489
Query 1511 TTCAGAAATGTCGTGCAATTGTGCAATTGGTGTTGATAACGGGTTTGCGTACACATTAGA 1570
||||||||||||||||||||||||||||| | ||||||||| |||||||||| || || |
Sbjct 1490 TTCAGAAATGTCGTGCAATTGTGCAATTGCTTTTGATAACGTGTTTGCGTACTCAGTAAA 1549
Query 1571 TGGGTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCTCGTGATCAACGGAA 1630
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1550 TGGCTTACTCAAAGAAGAATTCTTGGAAGCTCGGATCTCTGAGGCCCGCGATCAACGGAA 1609
Query 1631 ACAGGTGCTGCGATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1690
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ACAGGTGCTGCAATTCTGTGAAGAGTGCCCATTGGAGAGAGCTAAAAAGGTTGAGATTTT 1669
Query 1691 GGAACCATGTAAAGGGCATCTAAAGAGGGGAGCCATTAAAGAGTGTTGGTTCAAATGTGG 1750
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1670 GGAACCATGCAAAGGGCATCTGAAGAGGGGAGCCATTAAAGAGTGTTGGATCAAATGTGG 1729
Query 1751 TTGCACTAAGAGATGCGGTAACCGAGTGGTGCAAAGAGGAATGCACAACAAATTACAGGT 1810
|||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||
Sbjct 1730 TTGCACTAAGAGATGCGGTAACCGAGTGATACAAAGAGGAATACAAAACAAATTACAGGT 1789
Query 1811 GTTTTTCACGCCAAATGGGAAAGGCTGGGGACTTAGGACTTTAGAGAAACTGCCTAAAGG 1870
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1790 GTTTTTCACGCCAAATGGGAAAGGCTGGGGCCTTAGGACGTTGGAGAAACTGCCTAAAGG 1849
Query 1871 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 GGCATTTATTTGTGAGTACATTGGAGAGATATTGACAATTCCGGAGTTATACCAACGTAG 1909
Query 1931 CTTTGAAGATAAACCCACTT-TGCCTGTGATATTGGATGCACATTGGGGTTCTGAAGAAA 1989
|||||||| ||||| ||||| | ||| | ||||||||||||||||||||||||||||| |
Sbjct 1910 CTTTGAAGGTAAACTCACTTGT-CCTTTTATATTGGATGCACATTGGGGTTCTGAAGAGA 1968
Query 1990 GGTTAGAGGGTGACAAAGCTCTGTGTCTTGATGGGATGTTTTATGGAAATATCTCAAGGT 2049
||||||||| |||||||||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1969 GGTTAGAGGATGACAAAGCTCTGTGTCTTGATGGGACGCATTATGGAAATATATCAGGGT 2028
Query 2050 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATTCCAGTTCAAGTCGAGACTC 2109
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2029 TCCTTAACCACAGATGTCTTGATGCAAACTTGATCGAGATCCCAGTTCAAGTCGAGACTC 2088
Query 2110 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGAGACATCGAGGCAATGGAGG 2169
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2089 CGGATCAGCATTATTATCATCTTGCATTCTTCACAACAAGGGACATCGAGGCAATGGAGG 2148
Query 2170 AACTCGCATGGGATTATGGCATTGACTTCAACGATAATGACTCTCTAATGAAACCCTTTG 2229
||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||
Sbjct 2149 AACTCACATGGGATTATGGCGTTGACTTCAACGATGATGAATCTCTGATGAAACCCTTTG 2208
Query 2230 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAACGAAGACCATGCAGA 2289
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2209 ATTGTCTGTGTGGTAGCAGATTCTGCAGGAACAAGAAGCGATCAAAGAAGATCATGCAGA 2268
Query 2290 TTTTGAACAAAGCATGAGAGGCTAGTGAAGAAGAAAAGACGTGATGAGACCCTCTGTTTT 2349
|| |||||||||||||||||| | |||||||||||||| | ||||||||||| |||||
Sbjct 2269 TTATGAACAAAGCATGAGAGGAGAATGAAGAAGAAAAGA--T-ATGAGACCCTCCGTTTT 2325
Query 2350 TTGGTGAATGGGACTCTC--------CAAACCGGTCCGGGTTAATAGATTTTGTAGGTTG 2401
||| |||||||||||||| ||||||| ||| ||| ||| ||||||||||||||
Sbjct 2326 TTG-TGAATGGGACTCTCTTAATTAACAAACCGTTCCCGGTCAATTGATTTTGTAGGTTG 2384
Query 2402 GGaaaaaaaGAAGCTTAAGTTGGGTATTGTGTGATCAAACTCTGTATAGCT 2452
| |||| |||| ||| ||||||| ||||||| |||||||||||||||||||
Sbjct 2385 G-AAAACAAGATGCT-AAGTTGGTTATTGTGAGATCAAACTCTGTATAGCT 2433
Score = 494 bits (267), Expect = 2e-138
Identities = 375/423 (89%), Gaps = 24/423 (6%)
Strand=Plus/Plus
Query 47 AGTTTTTTGAGGTTGGTGAGTGA-TTCAGCTTTGTTATTGCAGAAACTT-GTTGAAAATG 104
|||||| |||||| ||||||||| || |||||||| |||||||||| || || |||||||
Sbjct 25 AGTTTTATGAGGTGGGTGAGTGATTTTAGCTTTGTCATTGCAGAAA-TTCGTCGAAAATG 83
Query 105 GCACCGAATCTTAGGATTAAGAAAGCCTGTGACGCGATGAAGCTTTTAGGAATATCAGAG 164
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 84 GCACCGAATCCTAAGATTAAGAAAGCCTGTGACGCTATGAAGCTTTTAGGAATATCAGAG 143
Query 165 ACGAAAACAAGGGCCTTTCTCAGGAAACTTCTCAAGACCTATGAGAATAACTGGGATTTC 224
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 144 ACGAAAACAAGGGCCTTTCTCAGAAAACTTCTCAAGGCCTATGATAATAACTGGGATTTC 203
Query 225 ATTGAAGAGGATGCTTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 284
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 ATTGAAGATGAAGCCTATAAGGTCCTTCTTGATGCAATCTTCGACGAGGCTGATGCCCAG 263
Query 285 TCCACTgaaaaaaataagaaggaagaggaaaagaagaagaaggaagaggaaaagaagtcc 344
||||||||||| | | |||| || || || || | ||| |||| | | |||
Sbjct 264 TCCACTGAAAAGA-T--GAAG-AA-AG-AA--GA-G--GAA--AAGA--A---G---TCC 302
Query 345 agaagTGTAGCAACGAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAA 404
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AAAAATGTAGCAACCAGCAGGGGAAGGAGGAAAGCTCCTGAGCCTTTGGTACAAGATGAG 362
Query 405 GAGGACGATATGGATGAAGATGAATTTCCATTGAAAAGGAGGTTGCGCAGTAGACGTGGA 464
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||
Sbjct 363 GAGGACGATATGGATGAAGATGAAACTCCATTGAAAAGGAGGTTGCGTAGTAAACGCGGA 422
Query 465 AGA 467
|||
Sbjct 423 AGA 425
> Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2
Length=1171
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 467 AGCTTCATCTTCATCTTCATCTTCATCTTC 496
||||||||||||||||||||||||||||||
Sbjct 358 AGCTTCATCTTCATCTTCATCTTCATCTTC 329
> Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1
Length=1705
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496
||||||||||||||||||||||||||||
Sbjct 1424 CTTCATCTTCATCTTCATCTTCATCTTC 1397
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496
||||||||||||||||||||||||||||
Sbjct 1430 CTTCATCTTCATCTTCATCTTCATCTTC 1403
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 469 CTTCATCTTCATCTTCATCTTCATCTTC 496
||||||||||||||||||||||||||||
Sbjct 1436 CTTCATCTTCATCTTCATCTTCATCTTC 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100901059005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5