BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04070.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919082 jgi|Araly1|919082|scaffold_100363.1 457 5e-128
> Ahg919082 jgi|Araly1|919082|scaffold_100363.1
Length=333
Score = 457 bits (247), Expect = 5e-128
Identities = 292/314 (93%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 63 TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGCAAAG-GCGATTCGAGCATCTTGGCG 121
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 21 TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGC-GGGAGAGATTCGAGCATCTTGGCG 79
Query 122 AAGATTTCAAACTACGATATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCCGTCTAC 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 80 AAGATTTCAAACTACGAAATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCTGTCCAC 139
Query 182 GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTT 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTG 199
Query 242 CTCATCCTTGCCGTGCCTTTGATCTTAGAGTTGGAGCAAGATCATCGATTAGGCGAGATA 301
|||||||||| ||| ||||||||||||||||||||| ||||||| | || | ||||| |
Sbjct 200 CTCATCCTTGTCGTCCCTTTGATCTTAGAGTTGGAGAAAGATCAGCAATCAAGCGAGTTT 259
Query 302 GATTTTGAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCTCTAAAGTAAC 361
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 260 GAGTTTCAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCACTAAAGTAAC 319
Query 362 TTTAGAAACCCTAA 375
| ||||||||||||
Sbjct 320 TGTAGAAACCCTAA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5