BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04100.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470386 jgi|Araly1|470386|fgenesh2_kg.1__340__AT1G04100.1 1323 0.0
> Ahg470386 jgi|Araly1|470386|fgenesh2_kg.1__340__AT1G04100.1
Length=1202
Score = 1323 bits (716), Expect = 0.0
Identities = 898/983 (91%), Gaps = 23/983 (2%)
Strand=Plus/Plus
Query 291 GCAATTTGGGATAATGAATGGTTTGCAAGAAGTTTGTTCGTCAAGTGGGTCGGTGATGAT 350
|||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 224 GCAATTTGGGGTAATGAATGGTTTGCAAGATGTTTGTTCTTCAAGTGGGTCGGTGATGTT 283
Query 351 CGGACTACCAGCTGAAGAAGACGAAAACGCCGCACATTCGTCGGAGGATTCATCTTGCCC 410
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 284 CGGACTTCCAGCTGAAGAAGACGAAAACGCCGCACTTTCGTCGGAGGATTCTTCTCGCCC 343
Query 411 CGACGAGTCAGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCA----T-T--- 462
||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 344 CGACGAGTCTGTGTCAGAGACAGAGCTCGACCTAGCTTTGGGTCTTAGCATTGGTCTCAA 403
Query 463 -GGTCGTCGGAAGGTTCGATCGTCTTTGTCTTCCTCGTCTTCTTC-TC--TGACCAGGGA 518
|||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||
Sbjct 404 AGGTCGTCGGAAGGTTCGATCTTCTTTGTCTTCCTCTTCTTCTTCTTCTATGACCAGGGA 463
Query 519 AAGTGGGACCAAACGCTCTGCTGATTCTTCTCCGGCTGCCGCCTCAAACGCAACCAGACA 578
||||||||||||||||||||||||||||||| | || || |||||||||||||| |||||
Sbjct 464 AAGTGGGACCAAACGCTCTGCTGATTCTTCTTCTGCGGCTGCCTCAAACGCAACGAGACA 523
Query 579 AGTTGCTGTAGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 638
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTTGCAGTCGGTTGGCCGCCTCTACGGACTTACAGAATCAACAGTTTGGTCAATCAAGC 583
Query 639 AAAGTCTTTAGCTACGGAAGGCGGCTTGAGTTCTGGCATTCAAAAGGAGACTACAAAAAG 698
|||||| |||||||| ||||||||||||||||||| |||||||||||| || | |||||
Sbjct 584 AAAGTCATTAGCTACTGAAGGCGGCTTGAGTTCTGACATTCAAAAGGACACAATAAAAAA 643
Query 699 TGTAGTGGTTGCTGCTAAGAACGATGATGCTTGCTTTATCAAATCGT-CCAGGACTTCTA 757
| ||||| ||||| || |||||||||| ||||||||||||||| | ||||||||||||
Sbjct 644 CGGCGTGGTGGCTGCGAAAAACGATGATGTTTGCTTTATCAAATC-TACCAGGACTTCTA 702
Query 758 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGCTTGTGAAGGTGACAATGGACGGAGTTATAATTGGAAGGAAGGTTGATCTCAATGCTC 762
Query 818 TGGATTCTTATGCAGCCTTAGAGAAAACTTTGGATCTAATGTTTTTCCAGATTCCTTCTC 877
| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 763 TTGATTCTTATGCAGCCTTGGAGAAAACTTTGGAACAAATGTTTTTCCAGATTCCTTCTC 822
Query 878 CTGTAACAAGATCCAACACACAAGGATACAAGACAATTAAGGAAACATGTACTTCGAAAT 937
|||| |||| ||| ||||||||||||| ||||||||| ||||||||| || ||||| ||
Sbjct 823 CTGTTACAAAATCAAACACACAAGGATGCAAGACAATCAAGGAAACACGTGCTTCGGTAT 882
Query 938 TACTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 997
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TGCTGGATGGCTCATCGGAATATATCATAACATATCAAGATAAAGACGGAGATTGGATGC 942
Query 998 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTCGGGTCTGTGACAAGACTGAGAATCATGA 1057
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 943 TTGTAGGAGATGTTCCTTGGCAGATGTTCCTTGGGTCCGTGAAAAGACTGAGAATCATGA 1002
Query 1058 AGACAT-CAATTGGAGCTGGAGTAGGTAAGTAGAGAGTCCTATATAGCAAAAA-CAGTTT 1115
|| ||| ||| || | ||||| |||||||||||||| |||||||||||||||| || |||
Sbjct 1003 AG-CATTCAAATGAAACTGGACTAGGTAAGTAGAGATTCCTATATAGCAAAAAACATTTT 1061
Query 1116 ACATCTCTTTGGTCTGTAACTCATATATCACATTCACATATATACATGTGCATATGTTT- 1174
||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1062 ACATCTCTTTGGTTTGTAACTCATATATCACGTTCACATGTAAACATGTGCATATGTTTT 1121
Query 1175 -ATACATGAGTGTACATATGTCTTGTGGTCGTTTGTGAATATCAAACAACAGCTTAACCT 1233
||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1122 TATACACGAGTGTACATATGTCTTGTGGTCGTTTGTGTATATTAAACAACAGCTTAACCT 1181
Query 1234 --TGTCTTTAAAGATCTTTGTAT 1254
||| ||||| |||||||||||
Sbjct 1182 CCTGT-TTTAA-GATCTTTGTAT 1202
Score = 217 bits (117), Expect = 2e-55
Identities = 207/246 (84%), Gaps = 23/246 (9%)
Strand=Plus/Plus
Query 13 TCTCTCTCTCTTTAAGAAAAATTCCTTGTTTTTGATCCGAGAATCGAAGTCGCCCTCGAA 72
|||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||| |||
Sbjct 1 TCTCTCTCTCTTTAAGAAAAGTTCCTTCTTTTTGATCCGTGAATCGAAGTCACCCTAGAA 60
Query 73 TCAAGATTAAAACCTCGTTTAGTTCTCAATTTCAGTTCTGTGGATCCGTGCGTGACCTCA 132
||||||||||||||||||||||||| ||||||| | || || || || |
Sbjct 61 TCAAGATTAAAACCTCGTTTAGTTCCCAATTTC-G----GT---TC--TG--TG---T-- 103
Query 133 AGttttttttttttttCTGTCTCGAAATTCAGAATCGTAGAGGTGTTGAAAGTTGAAACC 192
||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 104 -GTTTTTTTTTTGCT-CTGTCTCGAAATTCAGAATCCTAGAGGTGTTGAAAGTTGAAAAC 161
Query 193 ttttttttGGTTTGCTTGG-TTAATGGGTTTCTTCAAACTTGATCGATAATTGGATTTGA 251
|||| | |||| | |||| ||| |||||| |||||||||||||||| |||||||||||
Sbjct 162 TTTTCT--GGTTCGTTTGGGTTA-TGGGTTAATTCAAACTTGATCGATGATTGGATTTGA 218
Query 252 ATCAAG 257
||||||
Sbjct 219 ATCAAG 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5