BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04130.1
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470389 jgi|Araly1|470389|fgenesh2_kg.1__343__AT1G04130.1 1842 0.0
> Ahg470389 jgi|Araly1|470389|fgenesh2_kg.1__343__AT1G04130.1
Length=1304
Score = 1842 bits (997), Expect = 0.0
Identities = 1102/1153 (96%), Gaps = 6/1153 (1%)
Strand=Plus/Plus
Query 10 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 61
Query 70 CGACCACGGAGAAGGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCACCG 129
| || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62 CTACAACGGAGAACGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCGCCG 121
Query 130 CCATCGAATTCAAAGAAGAGGGCAATGAATGTGTAAGGAAAGGGAAAAAGCATTACTCTG 189
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 122 CCATCGAATTCAAAGAACAGGGCAATGACTGTGTAAGGAAAGGGAAAAAGCATTACTCCG 181
Query 190 AGGCGATTGATTGTTACACGAAAGCCATTAGTCAGGGAGTTCTAAGTGATTCAGAGACCT 249
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 182 AGGCGATTGATTGTTACACGAAAGCCATTAATCAGGGAGTTCTAAGTGACTCAGAGACCT 241
Query 250 CTATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 309
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CAATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 301
Query 310 TCACCGATGCTGAGGAATCAATGAGGTTATCTCCTCATAACGTTAAGGCGGTGTATCGAG 369
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 TCGCGGATGCTGAGGAATCAATGAGGTTATGTCCTCATAACGTTAAGGCGGTGTATCGAG 361
Query 370 CTGCTAAGGCATCCATGTCATTGGATTTGCTGAACGAGGCAAAGTCTTATTGTGAAAAGG 429
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 CTGCAAAGGCATCAATGTCATTGGATTTGCTGAACGAAGCAAAGTCTTATTGTGAAAAGG 421
Query 430 GAATCGAGAATGATCCGAGTAATGAGGACATGAAGAAGCTTTTAAAACTTGTGAATTCAA 489
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 422 GAATCGAGAATGATCCAAGTAATGAGGACATGAAGAAGCTTTTGAAACTGGTGAATTCAA 481
Query 490 AGAAGCAAGAGAAAGAACAACATGAGGCTCAAGCCTCACA-GGCGGTGGTGGAAGCCAAG 548
|||||||||| ||||||||||| |||||||||| |||| | ||| ||||| |||||||||
Sbjct 482 AGAAGCAAGAAAAAGAACAACACGAGGCTCAAGTCTCA-AGGGCTGTGGTTGAAGCCAAG 540
Query 549 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 600
Query 609 CTCACTGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 668
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCACGGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 660
Query 669 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTTGAGGACTTTTGTGAAACAGACATG 728
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTCGAGGACTTTTGTGAAACAGACATG 720
Query 729 TTTGCAACTCATCTTGATATGATGTTTTCAGAGGACAGCCCGCCGCTGCCATGGGATAAA 788
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 721 TTTGCAACTCATCTTGATATGATGTTTTTAGAGGACAGCCCGCCGCTGCCATGGGATATA 780
Query 789 AACAACGAATACTCACGTGATGTTATTGAGCTTTACTACGAGGCGAGTTCAGGAACTCCA 848
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AACAACGAATACTCGCGGGATGTTATTGAGCTTTACTATGAGGCGAGTTCAGGAACTCCA 840
Query 849 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTTTAGAAGGTACAAAAGGTTCTCAAGCTGAA 908
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTCTAGAAGGTACAAAAGGTTCTCAAGCTGAA 900
Query 909 ACTACCGGAGAAGAGGACACAAGCGCAACCAAAACACCCTCCTACCTGAAAGGTTCTTCG 968
|||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 901 ACTACCGGTGAAGAGGACACAAGTGTAACCAAAACACCCTCCTACATGAAAGGTTCTTCG 960
Query 969 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1020
Query 1029 GTCATCCCTGAGATTCCAGTCTTTTACATCGTATCAAAGAGGTCCAAATTCTACAAGGAC 1088
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1021 GTCATCCCTGAGATTCCAGTCTTCTACATCGTATCAAAGAGGTCTAAATTCTACAAGGAC 1080
Query 1089 TTTACCGCTGGAAAATGGACTCCACCAAACTAAAGAATTGAGTTAGAAAGAGAATAG-TT 1147
|||| |||||||||||||| ||||||||| || ||||||||||| ||||||||| | ||
Sbjct 1081 TTTATCGCTGGAAAATGGAGTCCACCAAATTAGAGAATTGAGTTCTAAAGAGAAT-GCTT 1139
Query 1148 GA-TGATAATTTT 1159
| ||||| ||||
Sbjct 1140 -ACTGATAGTTTT 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49178562930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5