BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04130.1 Length=1315 Score E Sequences producing significant alignments: (Bits) Value Ahg470389 jgi|Araly1|470389|fgenesh2_kg.1__343__AT1G04130.1 1842 0.0 > Ahg470389 jgi|Araly1|470389|fgenesh2_kg.1__343__AT1G04130.1 Length=1304 Score = 1842 bits (997), Expect = 0.0 Identities = 1102/1153 (96%), Gaps = 6/1153 (1%) Strand=Plus/Plus Query 10 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TTTGCTTTCTATCTTTCTGCTGCGAATCAATGGCGCTATGGATGGACGCTGGAGCGACGC 61 Query 70 CGACCACGGAGAAGGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCACCG 129 | || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 62 CTACAACGGAGAACGAAAAGGCTGATCTTGAAGCTATTTCTGCTCTCAAAGAATCCGCCG 121 Query 130 CCATCGAATTCAAAGAAGAGGGCAATGAATGTGTAAGGAAAGGGAAAAAGCATTACTCTG 189 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | Sbjct 122 CCATCGAATTCAAAGAACAGGGCAATGACTGTGTAAGGAAAGGGAAAAAGCATTACTCCG 181 Query 190 AGGCGATTGATTGTTACACGAAAGCCATTAGTCAGGGAGTTCTAAGTGATTCAGAGACCT 249 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 182 AGGCGATTGATTGTTACACGAAAGCCATTAATCAGGGAGTTCTAAGTGACTCAGAGACCT 241 Query 250 CTATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 309 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 CAATTTTGTTCTCGAATCGATCCCATGTTAATCTACTCTTAGGCAACTATCGGCGTGCCC 301 Query 310 TCACCGATGCTGAGGAATCAATGAGGTTATCTCCTCATAACGTTAAGGCGGTGTATCGAG 369 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 302 TCGCGGATGCTGAGGAATCAATGAGGTTATGTCCTCATAACGTTAAGGCGGTGTATCGAG 361 Query 370 CTGCTAAGGCATCCATGTCATTGGATTTGCTGAACGAGGCAAAGTCTTATTGTGAAAAGG 429 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 362 CTGCAAAGGCATCAATGTCATTGGATTTGCTGAACGAAGCAAAGTCTTATTGTGAAAAGG 421 Query 430 GAATCGAGAATGATCCGAGTAATGAGGACATGAAGAAGCTTTTAAAACTTGTGAATTCAA 489 |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 422 GAATCGAGAATGATCCAAGTAATGAGGACATGAAGAAGCTTTTGAAACTGGTGAATTCAA 481 Query 490 AGAAGCAAGAGAAAGAACAACATGAGGCTCAAGCCTCACA-GGCGGTGGTGGAAGCCAAG 548 |||||||||| ||||||||||| |||||||||| |||| | ||| ||||| ||||||||| Sbjct 482 AGAAGCAAGAAAAAGAACAACACGAGGCTCAAGTCTCA-AGGGCTGTGGTTGAAGCCAAG 540 Query 549 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCTTGTCTCTCTGCGATCGAGAACAGAGGAGTGAAGATTGGCAAAGCAATGTACCGAGAA 600 Query 609 CTCACTGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 668 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTCACGGGTTTGAAGAAGCCAATGTTAGATAAAAACAACATCCTTCATTGGCCTGTCCTG 660 Query 669 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTTGAGGACTTTTGTGAAACAGACATG 728 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 661 CTTCTTTACGCTGAGGCCATGACAAGTGACTTTGTCGAGGACTTTTGTGAAACAGACATG 720 Query 729 TTTGCAACTCATCTTGATATGATGTTTTCAGAGGACAGCCCGCCGCTGCCATGGGATAAA 788 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 721 TTTGCAACTCATCTTGATATGATGTTTTTAGAGGACAGCCCGCCGCTGCCATGGGATATA 780 Query 789 AACAACGAATACTCACGTGATGTTATTGAGCTTTACTACGAGGCGAGTTCAGGAACTCCA 848 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 AACAACGAATACTCGCGGGATGTTATTGAGCTTTACTATGAGGCGAGTTCAGGAACTCCA 840 Query 849 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTTTAGAAGGTACAAAAGGTTCTCAAGCTGAA 908 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 TTGCCTAGGAGTAGAGTTCTCCAGTATCTTCTAGAAGGTACAAAAGGTTCTCAAGCTGAA 900 Query 909 ACTACCGGAGAAGAGGACACAAGCGCAACCAAAACACCCTCCTACCTGAAAGGTTCTTCG 968 |||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||| Sbjct 901 ACTACCGGTGAAGAGGACACAAGTGTAACCAAAACACCCTCCTACATGAAAGGTTCTTCG 960 Query 969 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGTATGGTTAAAGTGAACGAGAGAAGAACATTGCATGACGTGTTGAAAGAACCTAAGTTT 1020 Query 1029 GTCATCCCTGAGATTCCAGTCTTTTACATCGTATCAAAGAGGTCCAAATTCTACAAGGAC 1088 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1021 GTCATCCCTGAGATTCCAGTCTTCTACATCGTATCAAAGAGGTCTAAATTCTACAAGGAC 1080 Query 1089 TTTACCGCTGGAAAATGGACTCCACCAAACTAAAGAATTGAGTTAGAAAGAGAATAG-TT 1147 |||| |||||||||||||| ||||||||| || ||||||||||| ||||||||| | || Sbjct 1081 TTTATCGCTGGAAAATGGAGTCCACCAAATTAGAGAATTGAGTTCTAAAGAGAAT-GCTT 1139 Query 1148 GA-TGATAATTTT 1159 | ||||| |||| Sbjct 1140 -ACTGATAGTTTT 1151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49178562930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5