BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04140.2
Length=3138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470391 jgi|Araly1|470391|fgenesh2_kg.1__345__AT1G04140.2 4645 0.0
Ahg494609 jgi|Araly1|494609|fgenesh2_kg.8__425__AT5G43930.3 963 0.0
> Ahg470391 jgi|Araly1|470391|fgenesh2_kg.1__345__AT1G04140.2
Length=3064
Score = 4645 bits (2515), Expect = 0.0
Identities = 2934/3126 (94%), Gaps = 70/3126 (2%)
Strand=Plus/Plus
Query 16 TTAGATAATCAAGAACAGGGCATTTCCAATTAGAGAGaaaaaaaGGAGATCC-TTTTAAT 74
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 TTAGATAATGAAGAACAGGGCATTT-CAATTAGAGAGAAAAAAAGGAGATCCTTTTTAAT 59
Query 75 GTATCGCAGACCATCCTCAGCTATGGCCTCCTGTTTTTCCTTTTAGGTATCTTCGTAGCT 134
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
Sbjct 60 GTATCGCAGACCATCCTCAGCTATGTCCTCCTGTTTTTCCTTTTAGGTTTCTTCGTCGTT 119
Query 135 CTTCACCGTAAATAATCCC-GACCCATCTAGAGGACGGAGCCGCCGGCGAGGAAATTCAG 193
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CTTCACCGTAAATAGTCCCTGACCCATCTAGAGGACGGAGCCGCCGGCGAGGAAATTCGG 179
Query 194 GCAGATTAGATCGGCGATTTGGCCTTGTTTTCAACGAAGATCGTCTTGTTAGGGTTTCGT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAGATTAGATCGGCGATTTGGCCTTGTTTTCAACGAAGATCGTCTTGTTAGGGTTTCGT 239
Query 254 CCGCATCTATGGATTCTCTGTCAAATGGGGTATTGATATGAATTTCGGCTTTCGTGATGA 313
|||||||||||||||||||||||| || |||||||| ||||||||| |||||| ||||||
Sbjct 240 CCGCATCTATGGATTCTCTGTCAACTGTGGTATTGACATGAATTTCAGCTTTCATGATGA 299
Query 314 CGGAATCTATCTGGTTAAACGATCAATCTTCTCCTCGGTCGATGATACCTTCAGCAAAAC 373
||||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 300 CGGAATCTATCTGGTTACACGATCAACCTTCTCCTCGGTCGATGATACCGTCACCAAAAC 359
Query 374 CAGTGGCTAATGTCCATCGCCAGAGGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGG 433
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 360 CAGTGGCTAATGTCCATCGCCAAAGGTGTAGGAGCGTCTTCAAGTTACTGGTCCAGAGGG 419
Query 434 AAATTTCACCAAACACAAAGTTTGTTCCAAGAAAACGGTGGGGTGAAAGCCGATGTGATG 493
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 420 AAATTTCACCAAAAACAAAGTTTGTGCCAAGAAAACGGTGGGGTGAAAGCCGATGGGATG 479
Query 494 CTGATTCGTCGTGTGGAACCACTAGCGAACCAGTGAGAGAGCAGGGACTTAATCTTATTT 553
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 480 CTGATTCGTCGTGTGGAACCACTAGCGAACCAGTGAGCGAGCAGGGACATAATCTTATTT 539
Query 554 CTTGGGTTGAGGCAGAGTCATTGCAGCATTTATCTGCTAAATACTGTCCTCTTGTACCTC 613
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 CTTGGGTTGAGGCAGAGTCATTGCAGTATTTATCTGCTAAATACTGTCCTCTTGTACCTC 599
Query 614 CTCCAAGGTCAACGATTGCAGCAGCTTTTAGTTCAGATGGAAGAACTCTTGCTTCTACAC 673
||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 600 CTCCAAGGTCAACTATTGCAGCAGCTTTTAGCTCTGATGGAAGAACTCTTGCCTCTACAC 659
Query 674 ATGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 ATGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATTTTGA 719
Query 734 CTGGCCATCGAAGGACACCCTGGGTGGTCAGATTTCACCCGCGCCACTCAGAAATAGTTG 793
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 CTGGCCATCGGAGGACACCCTGGGTGGTCAGATTCCACCCGCGCCACTCAGAAATAGTTG 779
Query 794 CTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCA 853
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 780 CTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGCGGAGTGTATTA 839
Query 854 GAACTCATGATTTCTATCGACCTATTGCTTCCATTGCTTTCCACGCTGGA-GGTGAATTA 912
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 840 GAACTCATGATTTCTATCGACCTATTGCTTCCATTGCTTTCCACGCT-GATGGTGAATTA 898
Query 913 CTTGCTGTTGCATCTGGTCATAAGTTGCACATATGGCATTATAATAAGGGAGGGGATGAC 972
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 899 CTTGCTGTTGCATCTGGTCATAAGTTGCACATTTGGCATTATAATAAGATAGGGGAGGAC 958
Query 973 TCGGCACCAGCAATTGTGTTGAAGACAAGGCGGTCCCTGAGAGCTGTACACTTTCATCCA 1032
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 TCGTCACCAGCAATTGTGTTGAAGACAAGGCGTTCCCTGAGAGCTGTACACTTTCATCCA 1018
Query 1033 CATGGGGTTCCTCTTCTCTTGACTGCTGAGGTGACTGACATTGATTCATCAGATTCCGCA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATGGGGTTCCTCTTCTCTTGACTGCTGAGGTGACTGACATTGATTCATCAGATTCCGCA 1078
Query 1093 ATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACC 1152
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATGACAAGAGCAACATCTCCGGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACC 1138
Query 1153 AACACACAAAGTGGCAGTCGTACCAGTTTGGCAGCCGAACTGCCACTTGTGCCATTACCG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AACACACAAAGTGGCAGTCGTACCAGTTTGGCAGCCGAACTGCCACTTGTGCCATTACCG 1198
Query 1213 TATTTGCTCTTGCCTTCATATTCTGCGGATGATCCAAGAATACTATATTCTAGTGGTACT 1272
|| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||
Sbjct 1199 TACTTGCTCTTGCCTTCATATTCTCCTGATGATCCAAGAATACAATATTCTAGTGGTGCT 1258
Query 1273 ACTGGTCCAAGGAATGCACAAACAAGGTTTCAGAGTAATCAAAGTTCTGTAGAAC-ATGG 1331
||||||||||||| ||||||||| || ||||||||||| |||||||||||||||| | ||
Sbjct 1259 ACTGGTCCAAGGACTGCACAAACGAGATTTCAGAGTAACCAAAGTTCTGTAGAACTA-GG 1317
Query 1332 CAGCAGAACAATTTCGCCTTCTCCTCTTCCCATGGCTACGTCTGCTGATCTTTCTGGTTC 1391
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CAGCAGAACAATTTCACCTTCTCCTCTTCCCATGGCTACGTCTGCTGATCTTTCTGGTTC 1377
Query 1392 CTATCATGTCCCAGACAACTCTGCTAGTAATACATTTGCTACCCAAGCAGGAGCTAGAAA 1451
|||||||||||||||||| |||||| ||||||||||| || ||||||| |||||||||||
Sbjct 1378 CTATCATGTCCCAGACAATTCTGCTGGTAATACATTTACTGCCCAAGCTGGAGCTAGAAA 1437
Query 1452 TTCTACTACTGCAGTTGATGCCATGGATGTAGATGAAGCTCAACCTGTTGGAAGAAATAG 1511
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 TTCTACCACTGCAGTTGATGCCATGGATGTAGATGAAGCTCAACCTGCTGGAAGAAATAG 1497
Query 1512 AGTTCCCAGTCAAGTTTCAAGTCAACCAGATTTACTGGAGTTTGGACAACTTCAGCAGTT 1571
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1498 AGTTCCCAGTCAAGTTTCAAGTCAACCAGATTTACTCGAGTTTGGACAACTTCAGCAGTT 1557
Query 1572 ATTTCACTTTAGAGACAGAGGTTCCTGGGAGCTACCTTTTCTACAAGGGTGGTTGATGGC 1631
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1558 ATTTCAATTTAGAGACAGAGGTTCCTGGGAGTTACCTTTTCTACAAGGGTGGTTGATGGC 1617
Query 1632 TCAAAGCCAAGCTGGTGCTAATTCAGTGGCTCTTCCTACTGGTAGTAGTGGTCACGTCAA 1691
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 TCAAAGCCAGGCTGGTGCTAATTCAGTGGCTCTTCCTACTGGTAGTAGTGGTCATGTCAA 1677
Query 1692 CTCAACTCCTTATATGGGTTCTTCTTCAGCATCTCATTCATCCACAGCCAGTCTAGAGGC 1751
|||||||||||||| ||||||||| | || || || ||||||||||||||
Sbjct 1678 CTCAACTCCTTATACGGGTTCTTC---A---TC-CA--CA------GCCAGTCTAGAGGC 1722
Query 1752 TGGAGTAGCGTCATTAGAAATTCCTGGTGGTGTTAACTTATATGGGGTTTCTGCAAGAGG 1811
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1723 CGGAGTAGCGTCATTAGAAATTCCTGGAGGTGTTAACTTATATGGGGTTTCTGCAAGAGG 1782
Query 1812 TGACTCCCGGGACCGAATTCTACAGTCCCGCTTCGCAGGATCTGGTTTAGCAGAAGGTCG 1871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 TGACTCCCGGGACCGAATTCTACAGTCCCGCTTCGCAGGATCTGGTTTAGCAGAAGGTCT 1842
Query 1872 TTCCTCTCGTAACACTCAACATGAAGGAGCTGATGCTCAACCTGTGGTAAACAGAATCCC 1931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1843 TTCCTCTCGTAACACTCAACATGAAGGAGCTGATACTCAACCTGTGGTAAACAGAATCCC 1902
Query 1932 TTCTGAACTGGCTAGTTCAATTGCTGCTGCAGAGTTGCCTTGTACTGTCAAACTGAGAGT 1991
|||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1903 TTCTGAACTGGCTACTTCAATTGCTGCCGCAGAGTTGCCTTGCACCGTCAAACTGAGAGT 1962
Query 1992 GTGGTCACATGACATCAAAGACCCATGTTCAATACTGAAGTCTGACAAATGTCGATTAAC 2051
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1963 GTGGTCACATGACATCAAAGACCCATGTGCAATACTGAAGTCTGACAAATGTCGATTAAC 2022
Query 2052 AATACATCATGCTGTTCTTTGCAGTGAGATGGGAGCCCATTTTTCTCCATGTGGGAGATA 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 AATACATCATGCTGTTCTTTGCAGTGAGATGGGAGCCCATTTTTCTCCATGTGGGAGATA 2082
Query 2112 TTTAGCAGCCTGTGTTGCATGCGTTATTCCTCATGCTGAGACAGATCCAAGTTTGCAGAC 2171
||||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||
Sbjct 2083 TTTAGCAGCCTGTGTTGCATGTGTTATTCCTCATACTGAAACAGATCCAGGTTTGCAGAC 2142
Query 2172 ACTGGTCCAACAAGACTCAGGGCTTGCAACTTCCCCTACTCGACATCCTGTCACAGCACA 2231
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2143 ACTGGTCCAACAAGATTCAGGGCTCGCAACTTCCCCTACTCGACATCCTGTCACAGCACA 2202
Query 2232 TCAAGTCATGTATGAACTTCGTGTGTATTCTCTGGAAAAAGAATCATTTGGTTCGGTACT 2291
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2203 TCAAGTCATGTATGAACTTCGTGTGTATTCTCTCGAAAAGGAATCATTTGGTTCGGTACT 2262
Query 2292 TGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAGTTCTCACCAACCTC 2351
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2263 TGTGTCCCGGGCAATTAGGGCTGCACATTGCTTGACCTCTATCCAGTTCTCACCAACCTC 2322
Query 2352 CGAGCACATTCTGCTTGCATATGGTCGTCGTCATGGTTCTCTTTTGAAGAGCATTGTGAG 2411
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2323 CGAGCACATTCTGCTTGCATATGGTCGGCGTCATGGTTCTCTTTTGAAGAGCATTGTGAG 2382
Query 2412 TGATGGAGAAACAACATCACATTTTTTCACAGTTTTGGAGATTTACAGAGTTTCAGATAT 2471
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2383 TGATGGAGAAACAACATCACATTTTTTCACAGTGTTGGAGATTTACAGAGTTTCAGATAT 2442
Query 2472 GGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCC 2531
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GGAACTGGTGAGAGTACTCCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCC 2502
Query 2532 TTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGGAGGGAAAACTAAGGATCTTCCGGTA 2591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 TTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGGAGGGAAAACTAAGGATCTTCCGGTA 2562
Query 2592 CAACACAGCTGCTGCGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGC 2651
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||
Sbjct 2563 CAACACAGCTGCTGCGTCCAACCTCACTGCGCCAAATAGCTCTCCTGATGAGAACCTGGC 2622
Query 2652 CGAGGTAGAATTATTAACAAGGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAAT 2711
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2623 CGAGGTAGAATTATTGACAAGGTGCAGACCTATGCGTTAGAATGCTAGACAGGGGAGAAT 2682
Query 2712 TTGGGTCTCAACCATTCTATATACACACTCTCATAGACAGATCTTGCATTGCGGGACT-A 2770
| |||| |||||| |||||||||||| ||||||||||||||| ||||||||||| || |
Sbjct 2683 TCGGGTGTCAACCGTTCTATATACAC--TCTCATAGACAGATCGTGCATTGCGGG-CTTA 2739
Query 2771 TTTACCTTCCTTTGTTTCTTTTCGGGTTATTCTTCCCGTTCTGTTTGCTCGCGGTGCTTT 2830
|||| |||||| ||||||||||||||| |||| || | ||||| ||||||||||||||||
Sbjct 2740 TTTATCTTCCTCTGTTTCTTTTCGGGTAATTCCTCTCATTCTGCTTGCTCGCGGTGCTTT 2799
Query 2831 TAGTTGTCCT-ACCCGCTGTGCGATTCCAAACCTGAGAAGCTTTTTTCCATTCACGAGCT 2889
|||||||||| | ||| | || |||||||||||||| |||||||| ||||
Sbjct 2800 TAGTTGTCCTGAACCG-------A----AA-CCTGAGAAGCTTTTC-CCATTCACAAGCT 2846
Query 2890 GGTGGTATCTTTTTCTTATTTTCTTATATACTGTTGAGGGCCGTAGGTTGGGATGGCCTA 2949
||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||
Sbjct 2847 GGTGGTATCTTTTTCTT-TTT-CTTATATACTGTGGAGGGCCACAGGTTGGGATGGCCC- 2903
Query 2950 TCTTCCATTTGCAAACCCTTTTCTTTaaaaaaacaaaaaaGAAATGAAGCAGGTTTCTGA 3009
|| | || ||| ||| ||| ||||||| |||||| ||| |||||||||||||||
Sbjct 2904 -CT-C--TT--CAA----TTTGCTT-AAAAAAAGAAAAAAAAAACGAAGCAGGTTTCTGA 2952
Query 3010 GTTTGTTGTTTAAAATGACTTCAGAAAAATGT--aaaaaaaaaaGATGtttttttGTTTG 3067
|| |||||||||||| |||| ||||||||||| |||||||||| | |||||| |||||
Sbjct 2953 GTCTGTTGTTTAAAAAGACTGCAGAAAAATGTTTAAAAAAAAAAAA-GTTTTT--GTTTG 3009
Query 3068 ATAAATTGATGTTGTAGTTTGTAACTAAGATTGTAACCACGTTTTTTCCTCTGTAAGATC 3127
| | | | | |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 3010 -T---T-G-TA--GC--TTTGTATCTAAGATTGTAACCACGTTTTTTCCTCTCTAAGATC 3059
Query 3128 Gttttt 3133
|||||
Sbjct 3060 -TTTTT 3064
> Ahg494609 jgi|Araly1|494609|fgenesh2_kg.8__425__AT5G43930.3
Length=2488
Score = 963 bits (521), Expect = 0.0
Identities = 1066/1318 (81%), Gaps = 82/1318 (6%)
Strand=Plus/Plus
Query 1345 TCGCCTTCTCCTCTTCCCATGGCTACGT-CTGCTGATCTTTCTGGTTCCTATCA-TGTCC 1402
||| || ||||| ||||| ||||||| | | | || || ||||||||| || | ||| |
Sbjct 1056 TCGTCTCCTCCTTTTCCCTTGGCTACATCCAG-TGGTCCTTCTGGTTCAAAT-AGTGTTC 1113
Query 1403 CA-GACAACTCTGCTAGTAATACATTTGCTACCCAAGCAGGAGCTAGAAATTCTACTACT 1461
|| || || ||| |||| |||| |||| ||||| ||| |||| ||| || || | ||
Sbjct 1114 CAGGA-AATTCTCCTAGCAATATATTTTTTACCCGAGCTGGAGATAG-AA--CT-C--CT 1166
Query 1462 GCAGTTGATGCCATGGATGTAGATGAAGCTCAACCTGTTGGAAGAAATAGAGTTCCCAGT 1521
|||||||||| ||| ||||||||||||||||||||||||||||||| || |||| ||
Sbjct 1167 GCAGTTGATGGCATCAATGTAGATGAAGCTCAACCTGTTGGAAGAAACGGAATTCCTAGC 1226
Query 1522 CAAGTTTCAAGTCAACCAGATTTAC-TGGAGTTTGGACA-ACTTCAGCAGTTATTTCACT 1579
|||||||||| || | ||||||| | || || ||||||| | ||| ||| ||||||||||
Sbjct 1227 CAAGTTTCAACTCGATCAGATTTCCCTG-AGCTTGGACAGA-TTCGGCAATTATTTCACT 1284
Query 1580 TTAGAGACAGAGGTTCCTGGGAGCTACCTTTTCTACAAGGGTGGTTGATGGCTCAAAGCC 1639
|||| || |||| |||||||||| |||||||||||||||| ||||||||||||||| | |
Sbjct 1285 TTAGGGATAGAGTTTCCTGGGAGTTACCTTTTCTACAAGGATGGTTGATGGCTCAAGGTC 1344
Query 1640 AAGCTGGTGCTAATTCAGTGGCTCTTCCTACTGGTAGTAGTGGTCACGTCAACTCAACTC 1699
| | || ||||||| |||||| || ||||||||| |||||| | | ||| |
Sbjct 1345 ATGGTGTTGCTAATCCAGTGGTTCCTCCTACTGGCAGTAGT----A----A--TCA--T- 1391
Query 1700 CTTATATGGGTTCTTCTTCAGCATCTCATTCATCCACAGCCAGTCTAGAGGCTGGAGTAG 1759
|| | ||| |||| || ||| | || ||| ||||||| ||||||| |||||
Sbjct 1392 -------GG---CATCT-CAGC-TC-CAT-CTTCAACATCCAGTCTGGAGGCTGCAGTAG 1437
Query 1760 CGTCATTAGAAATTCCTG-GTGGTGTTAACTTATATGGGGTTTCTGCAAGAGGT-GACTC 1817
||||||||||||| || | |||||||||||||| ||| ||| |||| |||||| || |
Sbjct 1438 CGTCATTAGAAATCCC-GAGTGGTGTTAACTTACATGCGGTGTCTGGAAGAGGCAGAG-C 1495
Query 1818 CCGGGACCGAA-TTCTACAGTCCCGCTTCGCAGGATCTGGTTTAGCAGAAGGTCGT-TCC 1875
|| ||| | || ||| ||| ||| ||| |||||||| ||| | | |||| || ||
Sbjct 1496 CCAGGAACAAACTTC-ACAACCCCAATTCTTGGGATCTGGATTACCGGGAGGT-GTGTCT 1553
Query 1876 TCTCGTAACACTCAACATGAAGGAGCTGATGCTCAACCTGTGGTAAACAGAATCCCTTCT 1935
||||||||||| ||||||| | || ||||||||||||||| || ||||| ||| |||
Sbjct 1554 TCTCGTAACACGCAACATGGA--AG-TGATGCTCAACCTGTAGTGAACAGGGTCCAGTCT 1610
Query 1936 GAACTGGCTAGTTCAATTGCTGCT--G-CAG-AG----------T--TGC-------C-T 1971
|| || |||| |||||||||||| | ||| || | ||| | |
Sbjct 1611 GAGCTTGCTACCTCAATTGCTGCTTCGGCAGCAGCAGCAGCAGCTGCTGCAGAATTACCT 1670
Query 1972 TGTACTGTCAAACTGAGAGTGTGGTCACATGACATCAAAGACCCATGTTCA-ATACTGAA 2030
|||||||||||||| ||||||||||| ||||||||||||||||||| | || | ||||||
Sbjct 1671 TGTACTGTCAAACTCAGAGTGTGGTCGCATGACATCAAAGACCCATATGCACA-ACTGAA 1729
Query 2031 GTCTGACAAATGTCGATTAACAATACATCATGCTGTTCTTTGCAGTGAGATGGGAGCCCA 2090
|| |||| ||||| ||| ||||||| |||| ||| ||||||||||| |||||||| ||
Sbjct 1730 ATCCGACAGATGTCTATTTACAATACCGCATGATGTCCTTTGCAGTGAAATGGGAGCTCA 1789
Query 2091 TTTTTCTCCATGTGGGAGATATTTAGCAGCCTGTGTTGCATGCGTTATTCCTCATGCTGA 2150
|||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1790 TTTTTCGCCATGCAGGAGATATTTAGCAGCCTGTGTTGCATGTGTTTTTCCTCATGCCGA 1849
Query 2151 GACAGATCCAAGTTTGCAGACACTGGTCCAACAAGACTCAGGGCTTGCAACTTCCCCTAC 2210
|| |||||| | | ||||||| | ||||||||| |||||||||||||||||||| ||
Sbjct 1850 GATAGATCCTGGACTCCAGACACAAGCCCAACAAGATTCAGGGCTTGCAACTTCCCCAAC 1909
Query 2211 TCGACATCCTGTCACAGCACATCAAGTCATGTATGAACTTCGTGTGTATTCTCTGGAAAA 2270
|||||| |||||||||||||| |||||||| || || ||||||||||||||||| | ||
Sbjct 1910 TCGACACCCTGTCACAGCACACCAAGTCATTTACGACCTTCGTGTGTATTCTCTCCAGAA 1969
Query 2271 AGAATCATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTC 2330
||| |||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct 1970 GGAAAGTTTTGGTTCAGTACTCGTGTCACGGGCAATTAGAGCTGCACATTGCTTGACCTC 2029
Query 2331 TATCCAGTTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATGGTTC 2390
||||||||||||||| ||||| ||||| || || ||||||||||| || |||||||||||
Sbjct 2030 TATCCAGTTCTCACCCACCTCGGAGCATATACTTCTTGCATATGGGCGGCGTCATGGTTC 2089
Query 2391 TCTTTTGAAGAGCATTGTGAGTGATGGAGAAACAACATCACATTTTTTCACAGTTTTGGA 2450
|||||||| |||||| || |||||||| ||| |||||||||||||||||||||| |||||
Sbjct 2090 TCTTTTGAGGAGCATCGTTAGTGATGGTGAAGCAACATCACATTTTTTCACAGTGTTGGA 2149
Query 2451 GATTTACAGAGTTTCAGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGT 2510
||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||
Sbjct 2150 GATATACAGAGTTTCAGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGATGATGAAGT 2209
Query 2511 TAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGGAGGG 2570
||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 2210 GAATGTTGCTTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGGAGGG 2269
Query 2571 AAAACTAAGGATCTTCCGGTACAACACAGCTGCTGCGTCCAATCT-CACTGCACCAAA 2627
||||| |||||||||| |||||| ||||||||| | || || || ||||| ||||||
Sbjct 2270 GAAACTGAGGATCTTCCAGTACAATACAGCTGCTACCTCAAA-CTTCACTGGACCAAA 2326
Score = 640 bits (346), Expect = 0.0
Identities = 696/862 (81%), Gaps = 35/862 (4%)
Strand=Plus/Plus
Query 340 TCTTCTCCTCGGTCGATGATACCTTCA-GCAAAACCAGTGGCTAATGTCCATCGCCAG-A 397
||||||||||| || |||| || || || ||| | | | | ||| | || |||| | |
Sbjct 192 TCTTCTCCTCGTTCTTTGATTCCACCACGC-AAATCGGCGACGAATTTTCACCGCC-GCA 249
Query 398 GGTGTAGGAGTGTCTTCAAGT-TACTAGTCCAGAGGGAAATTTCACCAAACACAAAGTTT 456
|||| |||||||| || ||| | | || |||||| |||| ||||| || | | ||||
Sbjct 250 GGTGGAGGAGTGTATT-TAGTATGTTGGTTCAGAGGAAAATGTCACCGAAGGCGACGTTT 308
Query 457 GTTCCAAGAAAACGGTGGGGTGAA-AGCCGAT-GTGATGCTGATTCGTCGTGTGGAA-CC 513
|| ||||| ||||||||||| ||| || ||| || |||||||||| || || |||| |
Sbjct 309 GTGCCAAGGAAACGGTGGGG-GAAGAGTAGATGGT-ATGCTGATTCTTCATGCGGAATCA 366
Query 514 ACTAGCGAACCAG-TGAGAGA-GCAGGGACTTAA-TCTTATTTCTTGGGTTGAGGCAGAG 570
|| || || || | ||||||| || ||||| || ||||| ||| |||||||||||||||
Sbjct 367 AC-AGTGAGCC-GTTGAGAGAGGC-GGGAC-AAAGTCTTACTTCATGGGTTGAGGCAGAG 422
Query 571 TCATTGCAGCATTTATCTGCTAAATACTGTCCTCTTGTACCTCCTCCAAGGTCAACGATT 630
|||||||||||||||||||| ||||| | |||||||| | |||| || ||||| || |||
Sbjct 423 TCATTGCAGCATTTATCTGCAAAATATTATCCTCTTGGAGCTCCCCCGAGGTCGACTATT 482
Query 631 GCAGCAGCTTTTAGTTCAGATGGAAGAACTCTTGCTTCTACACATGGTGACCACACTGTA 690
||||| ||||||| | | |||||||||||||||||||||||||||||||| || ||||||
Sbjct 483 GCAGCGGCTTTTAATACTGATGGAAGAACTCTTGCTTCTACACATGGTGATCATACTGTA 542
Query 691 AAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGA-CTGGCCATCGAAGGAC 749
|| |||||||||||||| || ||||| ||||||||| | |||| | | ||||| ||||||
Sbjct 543 AAGATTATTGATTGTGAAACTGGAAACTGCTTAAAAGTTTTGAAC-GACCATCAAAGGAC 601
Query 750 ACCCTGGGTGGTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGA 809
|| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 602 TCCTTGGGTGGTCAGATTCCACCCGCTTCATTCAGAAATAGTTGCTAGTGGAAGTTTAGA 661
Query 810 TCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATG-ATTTCT 868
|| |||||| |||||||||||| | | |||| | || ||||| ||| |||||| ||| ||
Sbjct 662 TCTTGAGGTCCGCTTATGGAATACCACAACTTGTGAATGTATTAGATCTCATGTATT-CT 720
Query 869 ATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGG-TGAATTACTTGCTGTTGCATCT 927
|||| ||||||||||| || |||||||| |||| ||| |||| ||||||||||||| |||
Sbjct 721 ATCGTCCTATTGCTTCTATAGCTTTCCATGCTG-AGGGTGAACTACTTGCTGTTGCTTCT 779
Query 928 GGTCATAAGTTGCACATATGGCATTATAATAAGG-GAGGGGATGACTCGGCACCAG-CAA 985
||||||||| ||||||| | ||| || |||| || |||| || || || ||||| |
Sbjct 780 GGTCATAAGCTGCACATGTAGCACTACAATA-GGAGAGGAGAGGAATCATCACCAATCG- 837
Query 986 TTGTGTTGAAGACAAGGCGGTCCCTGAGAGCTGTACACTTTCATCCACATGGGGTTCC-T 1044
|||| |||||||| ||||| || |||||||||||||||||||| || ||||||| || |
Sbjct 838 TTGTATTGAAGACGAGGCGCTCTCTGAGAGCTGTACACTTTCACCCTCATGGGGCACCAT 897
Query 1045 CTTCTCTTGACTGCTGAGGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCA 1104
|||||||||| || ||||||| ||| |||||||||| |||||| | ||| | ||| ||
Sbjct 898 -TTCTCTTGACCGCAGAGGTGAATGAAATTGATTCATTAGATTCTTCGATGTCTAGAGCA 956
Query 1105 ACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAA-CACACAAAG 1163
|||| | || || ||| | |||||||||||||||||||| ||||| || ||| ||||
Sbjct 957 ACATGTATGGGCTACTTGAGGTATCCGCCCCCTGCTATTTTATTCAC-AAGCACGGAAAG 1015
Query 1164 TGGCAGTCGTACCAGTTTGGCA 1185
|| ||| || |||||||||
Sbjct 1016 ---CAATCGAACTAGTTTGGCA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118536842440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5