BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04150.1
Length=3039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910083 jgi|Araly1|910083|Al_scaffold_0001_337 2660 0.0
> Ahg910083 jgi|Araly1|910083|Al_scaffold_0001_337
Length=1818
Score = 2660 bits (1440), Expect = 0.0
Identities = 1681/1797 (94%), Gaps = 17/1797 (1%)
Strand=Plus/Plus
Query 1 ATGACTGAAGCTAAAACCGGCACTGGCAATGAGAGGCTCGTGGTGGAGATAGTAGGGGCC 60
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGACTGAAGCTAAAACCGGCACCGGCAATGAGAAGCTCGTGGTGGAGATAGTAGGGGCC 60
Query 61 CACAATCTCATGCCAAAAGATGGCGAA-GATTCTTCGTCACCTTTTGTGGAAGTGCAGTT 119
||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||
Sbjct 61 CACAATCTCATGCCAAAAGATGGCGAAGGA-TCTTCGTCTCCTTTTGTGGAAGTGGAGTT 119
Query 120 CGAGAACCAACGTCTCCGGA-CTAAGGTCAAACCCAAAGACTTGAACCCAATCTGGAACG 178
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CGAGAACCAACGTCTCC-GATCTAAGGTCAAACCCAAAGACTTAAACCCAATCTGGAACG 178
Query 179 AGAAGCTCGTCTTCCACGTTATTGACGTCAACGACCTCAGACACAAAGCCCTAGAAATCA 238
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 179 AGAAGCTCGTCTTCCACGTTATCGACGTCAACGACCTCAGACACAAAACCCTAGAAATCA 238
Query 239 ACGTATACAACGAGAAGCGTTCTTCTAACAGTAGAAACTTCTTGGGAAAGGTTAGGGTTT 298
||| |||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 239 GCGTTTACAGCGAGAAGCGTTCCTCTAACAGCAGAAACTTCCTGGGAAAGGTTAGGGTTT 298
Query 299 TGGGTTCCAGCGTTGGAAGAGAAGGAGAGTCAGTCGTTCAGCTCTACACTCTTGAAAAGA 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TGGGTTCCAGCGTTGGAAGAGAAGGAGAGTCAGTCGTTCAACTCTACACTCTTGAAAAGA 358
Query 359 GAAGCCTTTTCTCTTCCGTGCGTGGAGAAATCAGCGTCAAACACTACATGACCACAACGG 418
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGCCTTTTCTCGTCTGTGCGTGGAGAAATCAGCGTCAAACACTACATGACCACAACGG 418
Query 419 CGGAGAACGGTGAGAATGTCCGTCGGGTTAACAGG-TCGGGTGGTTCAAAGAAAAGCAAA 477
|||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 419 GGGAGAACGGTGAGAATGTCCGTCGTGTTAAC-GGATCGGGTGGTTCAAAGAAAAGCAAG 477
Query 478 AAAGTACAGAACGTGAGCTCTTCCATGGCGATTcaacaacagcagcaacaacaacagcaa 537
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 478 AAAGTACAGAACTTGAGCTCTTCCATGGCGATT---CAACAGCAACAACAACAACAGCAA 534
Query 538 caaatttctcttcacaatcacaacagaggaaatcaacaacaaAGTCAGCAGAACGGTCAA 597
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 535 CAAATTGCTCTTCACAATCACAACAAAGGAAATCAACAACAGAGTCAGCAGAACGGTCAA 594
Query 598 GGACAGAGGATGCTACCGTTTTATCCACACCAAAGTGAGATAAAGCCTCTCGTGATAACC 657
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 595 GGACAGAGGATGCTACCGTTTTATCCAAACCAAGGTGAGATTAAGCCTCTCGTGATAACC 654
Query 658 GCTCTTCCCAGTCCAATGCCCGGACCCGGACCCAGACCCATCGTTTACTCTAACGGGTCG 717
||||||||| ||||||| | ||||||||||||||| |||||||||| || ||||||
Sbjct 655 GCTCTTCCCGGTCCAAT-----G-CCCGGACCCAGACCCGTCGTTTACTCAAATGGGTCG 708
Query 718 AGTGAGTTTTCGCTTAAAGAGACAAAGCCATGTCTTGGAGGAACAAGTAATGGTCTTGGC 777
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 709 AGTGAGTTTTCGCTTAAAGAGACAAAGCCATGTCTTGGAGGAACTGGTACTGGTGTTGGC 768
Query 778 GGTTTGAGTAGTCACAAGGACAAAACAAGCTCCACTTATGATCTAGTTGAGCAAATGCAG 837
||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 769 GGTTTGACTAATCACAAGGACAAAACAAGCTCGACTTACGATCTAGTTGAGCAAATGCAG 828
Query 838 TACCTTTATGTTA-ATATCGTGAAAGCTAAGGACTTGTCGGTATTAGGCGAAGTCGTGTC 896
||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 829 TACCTTTATGTTAGA-ATCGTGAAAGCTAAGGACTTGTCGGTATCCGGCGAAGTCGTGTC 887
Query 897 GGAAGTGAAATTGGGTAATTACAGGGGAGTTACTAAAAAGGTGAGTTCAAATTCCAGTAA 956
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 888 GGAAGTGAAATTGGGTAATTACAGGGGAGTTACTAAAAAAGTGAGTTCGAATTCCAGTAA 947
Query 957 TCCAGAGTGGAATCAAGTATTTGTCTTTTCCAAAGAAAGAATTCAATCATCCGTAGTTGA 1016
|||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||
Sbjct 948 TCCAGAGTGGAATCAAGTCTTTGCCTTTTCCAAAGAAAGCATTCAATCATCCGTTGTTGA 1007
Query 1017 GCTTTTCGTTAAAGAAGGTAATAAAGATGAGTATACGGGTAGAGTCTTGTTTGATTTAAG 1076
||||||||| ||||||||||| |||||||||||||||||| | |||| ||||||||||||
Sbjct 1008 GCTTTTCGTCAAAGAAGGTAACAAAGATGAGTATACGGGTCGGGTCTGGTTTGATTTAAG 1067
Query 1077 CGAGATCCCAACCCGCGTTCCTCCGGATAGTCCGTTAGCTCCGCAATGGTACAAGATAGA 1136
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CGAAATACCAACCCGTGTTCCTCCGGATAGTCCGTTAGCTCCGCAATGGTACAAGATAGA 1127
Query 1137 GAATAGAAACGGCGGTAGAGGTAATGGAGAGCTTATGGTTTCGGTGTGGTTCGGGACTCA 1196
|||||||||||| |||||| | ||||||||| ||||||| || |||||||||||||||||
Sbjct 1128 GAATAGAAACGGTGGTAGAAGCAATGGAGAGATTATGGTGTCAGTGTGGTTCGGGACTCA 1187
Query 1197 AGCTGATGAGGCTTTTGCGGAGGCGTGGCATTCAAAGGCTGGAAATGTTCACATCGAGGA 1256
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1188 AGCTGATGAGGCTTTTGCTGAGGCGTGGCATTCAAAGGCTGGAAATGTTCACATTGAGGG 1247
Query 1257 ACTCTCATCGATCAAATCAAAGGTTTACTTGTCTCCTAAGCTATGGTATCTTAGGATATC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1248 ACTCTCATCGATCAAATCAAAGGTTTACTTGTCTCCTAAGCTATGGTATCTTAGGGTGTC 1307
Query 1317 AGTGATTGAGGCTCAAGATGTTGCAATTATGGACAAGGGATCAAGTCTCATGAGGTTTCC 1376
||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1308 AGTAATTGAGGCTCAAGACGTTGCGATTATGGACAAGGGATCAGGTCTCATGAGGTTTCC 1367
Query 1377 AGAGCTTTCGGCGAAGCTTCAAGTAGGGAGTCAGATACTGAGAACTGCAATCGCATCTGC 1436
|||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| |
Sbjct 1368 AGAGCTTTCGGCGAAGCTTCAAGTCGGGAGTCAGATACTGAGGACTCCAGTCGCATCTAC 1427
Query 1437 AATCCCCACAAAGAGCTTTTCAAATCCTTATTGGAATGAGGATTTGATGTTTGTAGTTGC 1496
|| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1428 AAGCCCCACGCAGAGCTTTTCAAATCCTTATTGGAACGAGGACTTGATGTTTGTAGTTGC 1487
Query 1497 AGAGCCGTTTGAGGATTGCGTTACAGTTGTTGTAGAGGATCGTCTTAATGGTGGTGCAAT 1556
|||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| |
Sbjct 1488 CGAGCCGTTTGAGGATTGCATTACAATTGTTGTGGAGGATCGTCTTGGTGGTGGTGCATT 1547
Query 1557 AGGAGGACAAAACGATGTGGCTGTTGGGAGGGTTCAGATTCCGATTTCCGCTGTTGAAAG 1616
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 1548 AGGAGGACAAAACGATGTGGCTGTTGGGAGGGTTCAAATTCCGGTTTCCGCTGTTGAGAG 1607
Query 1617 ACGAACAGGAGATACACTGGTTGGTTCAAGATGGTTTAGCCTAGATAACGGCAACAATAA 1676
|||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1608 ACGAACGGGAGATACACCGGTTGGTTCAAGATGGTTTAGCTTAGATAACGGCAACAATAA 1667
Query 1677 CAACCGGTTTGGTTCTAGGATTCATCTTAGATTGTCATTAGACGGTGGCTACCATGTTTT 1736
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1668 CAACCGGTTTGGTTCGAGGATTCATCTTAGATTGTCACTAGACGGTGGCTACCATGTTTT 1727
Query 1737 GGATGAGGCAACAATGTATAACAGTGATGTTAGACCGACTGCGAAAGAGCTTTGGAA 1793
|||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct 1728 GGATGAGGCAACAATGTATAGCAGCGATGTTAGGCCGACCGCGAAAGAGCTTTGGAA 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114765908185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5