BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04170.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919093 jgi|Araly1|919093|scaffold_100374.1 2374 0.0
Ahg924959 jgi|Araly1|924959|scaffold_200520.1 1319 0.0
Ahg343503 jgi|Araly1|343503|fgenesh1_pg.C_scaffold_3003266 1024 0.0
Ahg925067 jgi|Araly1|925067|scaffold_200628.1 850 0.0
> Ahg919093 jgi|Araly1|919093|scaffold_100374.1
Length=1442
Score = 2374 bits (1285), Expect = 0.0
Identities = 1388/1439 (96%), Gaps = 2/1439 (0%)
Strand=Plus/Plus
Query 176 GAGCAGAAGCTTCAATCTTTGATAATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTT 235
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GAGAAGAAGCTTCAATCTTTGATAATGTCGAGGAACAAAGGTTTGGCTGAGCAAGATCTT 60
Query 236 AAAAAATTGGATGTAACTGTGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCC 295
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 AAAAAATTGGATGTAACTGTGCTACATCCTTTGTCCCCTGAGGTCATTTCTCGCCAGGCC 120
Query 296 ACTATTAATATAGGAACCATTGGTCATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCT 355
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACTATTAATATAGGAACCATTGGCCATGTCGCTCATGGAAAGTCCACTGTTGTGAAAGCT 180
Query 356 ATTTCTGGTGTCCAGACTGTCCGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAG 415
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATTTCTGGTGTCCAGACTGTCCGTTTTAAGAATGAATTGGAGCGTAACATTACCATTAAG 240
Query 416 CTTGGATATGCAAACGCCAAGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATG 475
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGGATATGCAAATGCTAAGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATG 300
Query 476 TGCTACAAGGCCTACGGAAGTGGAAAGGAAGACACTCCCAATTGTGATGTCCCCGGATTT 535
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 301 TGCTACAAGGCCTACGGAAGTGGAAAAGAAGACACTCCAAATTGTGATGTCCCCGGATTT 360
Query 536 GAAAACTCCAAGATGAAACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGAT 595
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 361 GAAAACTCCAAGATGAAACTATTGAGGCATGTGTCATTCGTGGATTGCCCGGGACACGAT 420
Query 596 ATTCTCATGGCAACAATGCTTAATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATC 655
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATTCTCATGGCAACAATGCTTAACGGAGCAGCCATCATGGATGGTGCACTACTCTTAATC 480
Query 656 GCTGCAAATGAAACTTGTCCACAACCACAAACGTCTGAACATCTTGCTGCCGTTGAGATT 715
||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GCTGCAAATGAGACGTGTCCGCAACCACAAACGTCTGAACATCTTGCTGCCGTCGAGATT 540
Query 716 ATGCAACTT-AAGCATATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGT 774
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 ATGCAA-TTGAAGCATATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAACGT 599
Query 775 TGCCATTAATCAGCACGAGGCAATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGC 834
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TGCCATTAATCAGCACGAGGCAATTCAGAAATTTATAATGAACACTGTTGCGGATGCTGC 659
Query 835 TCCGATCGTCCCTGTCTCAGCACAACTGAAATACAACATTGATGTGGTGTGCGAGTACAT 894
||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 660 TCCAATCGTCCCCGTCTCAGCACAACTGAAATACAACATCGATGTTGTGTGCGAGTACAT 719
Query 895 TGTCAAGAAGATCCCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGAT 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTCAAGAAGATCCCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGAT 779
Query 955 TCGGTCTTTTGATGTCAACAAACCTGGTTATGAGGTTGATGAGATCAAAGGTGGAGTTGC 1014
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TCGATCTTTTGATGTCAACAAACCTGGTTATGAGGTTGATGAGATTAAAGGTGGAGTTGC 839
Query 1015 AGGTGGAAGTATCCTACGGGGTGTTTTGAGAGTCAACCAATTAATCGAAATCCGACCTGG 1074
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 840 AGGTGGAAGTATCCTCCGGGGTGTTTTGAAAGTCAACCAATTAATTGAAATCCGACCTGG 899
Query 1075 TATCGTTACCAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATCAT 1134
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TATCGTTACAAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATAAT 959
Query 1135 TTCACTCTACGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGAGGTCTAATAGGAGT 1194
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 CTCACTCTACGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGGGGTCTAATAGGAGT 1019
Query 1195 TGGAACAACAATGGACCCAACTCTCACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGG 1254
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGGACAACAATGGACCCAACTCTTACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGG 1079
Query 1255 TGAAATCGGTTCACTTCCTGATGTATTTGTTGAACTCGAGGTGAACTTCTTTCTTCTACG 1314
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1080 TGAAATCGGTTCACTTCCTGATGTCTTTGTTGAACTCGAGGTTAACTTCTTTCTTCTACG 1139
Query 1315 ACGTTTGTTGGGAGTGAGAACAAAGGGATCAGAGAAACAAGGGAAAGTGTCAAAGCTAAC 1374
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 ACGTTTGTTGGGAGTGAGAACAAAGGGATCAGAGAAACAAGGGAAGGTGTCAAAGCTAAC 1199
Query 1375 GAAAGGAGAGATTCTGATGCTCAACATTGGTTCGATGTCCACTGGAGCCAAAGTTGTAGG 1434
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1200 GAAGGGAGAGATTCTGATGCTCAACATTGGTTCTATGTCCACTGGAGCCAAAGTTGTGGG 1259
Query 1435 AGTTAAAGTCGATCTGGCTAAACTGCAACTGACTGCGCCTGTTTGTACCAGCAAAGGAGA 1494
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1260 AGTTAAAGTCGATCTGGCTAAACTGCAACTGACAGCGCCGGTTTGTACCAGCAAAGGAGA 1319
Query 1495 GAAAGTGGCTCTAAGCAGACGTGTGGAAAAGCATTGGCGTTTGATTGGTTGGGGTCAGAT 1554
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GAAAGTGGCTCTAAGCAGGCGTGTGGAAAAGCATTGGCGTTTGATTGGTTGGGGTCAGAT 1379
Query 1555 TCAAGCTGGAACCACCATCGAAGTTCCTCCTTCACCTTTCTAAGCTATGTGTTATTTTT 1613
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 TCAAGCTGGAACCACCATTGAAGTTCCTCCTTCACCTTTCTAAGCTGTGTGTTATTTTT 1438
> Ahg924959 jgi|Araly1|924959|scaffold_200520.1
Length=1441
Score = 1319 bits (714), Expect = 0.0
Identities = 1170/1390 (84%), Gaps = 32/1390 (2%)
Strand=Plus/Plus
Query 197 ATAATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAA--AAAATTGGATGTAACTG 254
|||||| | ||| ||||||||| ||||| ||||||| ||| || || ||||||| ||
Sbjct 18 ATAATGGGGTGGAGCAAGGGTTTAGCTGAACAAGATC-TAAGTAAGCTT-GATGTAAATG 75
Query 255 TGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCA 314
|||||||||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct 76 AGCTACATCCTCTGTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCA 135
Query 315 TTGGTCATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTG 374
|||| ||||| || || |||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 136 TTGGACATGTTGCACACGGAAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTG 195
Query 375 TCCGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAGCTTGGATATGCAAACGCCA 434
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 196 TCCGTTTTAAGAATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCA 255
Query 435 AGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGTGCTACAAGGCCTACGGAA 494
|||||||| ||||||||||| | || |||||||||||||||||||||||| | || || |
Sbjct 256 AGATTTACCAATGTGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGA 315
Query 495 GT-GGAAAGGAAGAC-ACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAA 552
|| ||||| |||||| || || ||||| ||||||| |||||||| |||| |||||||||
Sbjct 316 GTGGGAAA-GAAGACAAC-CCAAATTGCCATGTCCCTGGATTTGAGAACTGCAAGATGAA 373
Query 553 ACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAAT 612
||| ||||||||||||| || || ||||||||||| || |||||||||||||| |||||
Sbjct 374 GCTACTGAGGCATGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAAT 433
Query 613 GCTTAATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATCGCTGCAAATGAAACT-T 671
||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||| | | |
Sbjct 434 GCTCAATGGGGCCGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATG-AGGTCT 492
Query 672 GTCCACAACCACAAAC-GTCTGAACATCTTGCTGCCGTTGAGATTATGCAACTTAAGCAT 730
|||| |||||||| || | |||||||||||||| |||| || || ||||| |||||||||
Sbjct 493 GTCCTCAACCACAGACAG-CTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCAT 551
Query 731 ATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCAT-TAATCAGCA 789
|| || ||||||||||||||||||||||| |||||||| || | ||||| || |||||
Sbjct 552 ATTATAATCCTTCAGAACAAGATTGATCTCATTCAAGAAAAAGCCGCCATCGAA-CAGCA 610
Query 790 CGA-GGCAATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCTG 848
| | ||||||||||| |||||||| |||||| ||| || | ||| || || || ||||
Sbjct 611 C-ACGGCAATTCAGAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTG 669
Query 849 TCTCAGCACAACTGAAATACAACATTGATG-TGGTGTGCGAGTACATTGTCAAGAAGATC 907
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 670 TCTCAGCACAACTGAAATACAACATTGATGCTG-TGTGCGAGTACATTGTCAAGAAGATT 728
Query 908 CCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGATTCGGTCTTTTGAT 967
||||||||| | ||| ||||||||||||| ||||| |||||| | ||||| |||||||||
Sbjct 729 CCAATCCCTAAAAGGGATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGAT 788
Query 968 GTCAACAAACCTGGTTATGAGGTTGA-TGAGATCAAAGGTGGAGTTGCAGGTGGAAGTAT 1026
||||| |||||||| ||||||||| | ||| || ||||||||||| ||||||||||||||
Sbjct 789 GTCAATAAACCTGGCTATGAGGTT-ACTGATATTAAAGGTGGAGTGGCAGGTGGAAGTAT 847
Query 1027 CCTACGGGGTGTTTTGAGAGTCAACCAATTAATCGAAATCCGACCTGGTATCGTTACCAA 1086
| | ||||||||||||| ||| |||||||| || || ||||||||||||||||||| |||
Sbjct 848 CTTCCGGGGTGTTTTGAAAGTAAACCAATTGATTGAGATCCGACCTGGTATCGTTAGCAA 907
Query 1087 AGACGAGCGTGGCAACTCAAAATGCACTCCAATTTACTCTCGCATCATTTCACTCTACGC 1146
||| |||| ||| ||| ||| |||| |||| |||||||| || |||| |||| | |||||
Sbjct 908 AGATGAGCTTGGAAACCCAAGATGCTCTCCCATTTACTCCCGTATCACTTCATTGTACGC 967
Query 1147 GGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGAGGTCTAATAGGAGTTGGAACAACAAT 1206
|||||||||||||||||||||||||| || |||||||| || |||||||| ||||| ||
Sbjct 968 AGAACAGAACGAGCTTCAGTTTGCTGTGCCGGGAGGTCTGATCGGAGTTGGGACAACGAT 1027
Query 1207 GGACCCAACTCTCACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGGTGAAATCGGTTC 1266
|||||| || ||||| ||||| ||| | || ||||||||||| ||||||||||| |||||
Sbjct 1028 GGACCCTACGCTCACGCGTGCTGATAGGTTGGTTGGTCAAGTGCTTGGTGAAATGGGTTC 1087
Query 1267 ACTTCCTGATGTATTTGTTGAACTCGAGGTGAACTTCTTTCTTCT-ACGACGT-TTGTTG 1324
|| |||||||| | |||||| || ||||||| ||| ||||| || ||| || |||
Sbjct 1088 TCTCCCTGATGTCTATGTTGAGCTTGAGGTGAGTTTCCAGCTTCTGACC-CGTCTTATTG 1146
Query 1325 GGAGTGAGAACAAAGGGATCAGAGAAACA-AGGGAAAGTGTCAAAGCTAACGAAAGG-AG 1382
|| ||||| ||||||| | |||||| || | | |||||| ||||||||| | |||| ||
Sbjct 1147 GG-GTGAGGACAAAGGAAAAAGAGAAGCAGATG-AAAGTGGCAAAGCTAA-GCAAGGGAG 1203
Query 1383 AGATTCTGATGCTCAACATTGGTTCGATGTCCACTGGAGCCAAAGTTGTAGGAGTTAA-A 1441
|||| |||||| | ||||| || |||||||| | ||||| || ||| ||||||| || |
Sbjct 1204 AGATACTGATGGTGAACATCGGGTCGATGTCGGCGGGAGCTAAGGTTCTAGGAGTGAAGA 1263
Query 1442 GTCGATCTGGCT-AAACTGCAACTGACTGCGCCTGTTTGTACCAGCAAAGGAGAGAAAGT 1500
||| || | ||| |||||||||| | |||||| || |||| || ||||||||| ||
Sbjct 1264 AA-GATATGA-TGAAAGTGCAACTGACAGTGCCTGTCTGCACCAACATAGGAGAGAAGGT 1321
Query 1501 GGCTCTAAGCAGACGTGTGGAAAAGCATTGGCGTTTGATTGGTTGGGGTCAGATTCAAGC 1560
|||||||||| | ||||| || | ||||||||||||||||||| | ||||||||| | ||
Sbjct 1322 GGCTCTAAGCCGCCGTGTCGACAGGCATTGGCGTTTGATTGGTCGTGGTCAGATTGAGGC 1381
Query 1561 TGGAACCACC 1570
||||||||||
Sbjct 1382 TGGAACCACC 1391
> Ahg343503 jgi|Araly1|343503|fgenesh1_pg.C_scaffold_3003266
Length=1398
Score = 1024 bits (554), Expect = 0.0
Identities = 1128/1400 (81%), Gaps = 60/1400 (4%)
Strand=Plus/Plus
Query 200 ATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAA--AAAATTGGATGTAACTGTGC 257
||||||| ||||||||| || ||||| ||||||| ||| ||| || |||||| || ||
Sbjct 1 ATGTCGAAGAACAAGGGCTTAGCTGAACAAGATC-TAAGTAAACTT-GATGTAGCTCAGC 58
Query 258 TACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCATTG 317
|||||||||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||
Sbjct 59 TACATCCTCTCTCTCCTGAGGTCATCTCTCGACAAGCCACAATTAATATAGGGACTATTG 118
Query 318 GTCATGTCGCTCA-TGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTGTC 376
| ||||| ||||| ||||| || || | || ||||||||||| ||||| || |||||
Sbjct 119 GCCATGTTGCTCACGGGAAA-TCGACAATCGTGAAAGCTATTTCCGGTGTGCATACTGTT 177
Query 377 CGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAGCTTGGATATGCAAACGCCAAG 436
||||| | ||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 178 AAATTTAAGAGTGAATTGGAGCGTAACATTACCATTAAACTTGGTTATGCAAACGCAAAG 237
Query 437 ATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGT-G-CTACAAGGCCTACGGAA 494
|||||||||||| || | |||||||||||||| | || | ||||||| | | ||| |
Sbjct 238 ATTTACAAATGT---GA--A-AAATGCCCTAGACC-A-GTAGCCTACAAGTCTTTCGGGA 289
Query 495 GTGG-AAAGGAAGACACTCCCAA-TTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAA 552
|||| ||| ||||||| | |||| |||||||||| | ||| ||| | | |||||||||
Sbjct 290 GTGGCAAA-GAAGACAAT-CCAACTTGTGATGTCTCTGGACATGAGATGTGCAAGATGAA 347
Query 553 ACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAAT 612
|||| |||| ||||||||||| || ||||| ||||| ||||||||||| ||||| |||||
Sbjct 348 ACTACTGAGACATGTCTCATTTGTCGATTGTCCGGGACACGATATTCTGATGGCGACAAT 407
Query 613 GCTT-AATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATCGCTGCAAATGAAACTT 671
| || ||||||||||| || ||||||||||| ||||| | || ||||||||||| || |
Sbjct 408 G-TTGAATGGAGCAGCGATTATGGATGGTGCTCTACTAATCATTGCTGCAAATGAGACAT 466
Query 672 GTCCACAACCACAAACGT-CTGAACATCTTGCTGCCGTTGAGATTATGCAACTT-AAGCA 729
|||| ||||||||||| | | |||||||||||| | ||||| || ||||| ||| ||| |
Sbjct 467 GTCCGCAACCACAAAC-TGCAGAACATCTTGCTTCTGTTGATATGATGCACCTTAAAG-A 524
Query 730 TATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCATTA-ATCAGC 788
|||||| ||| ||||||||||||||||||| || ||||| || | || | | | ||||
Sbjct 525 TATCATAATCATTCAGAACAAGATTGATCTCATCCAAGAAAACGAGGCTAGGAGA-CAGC 583
Query 789 ACGAGGCA-ATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCT 847
|||||| | ||||||| |||||||| |||||| ||| || | |||||| || || |||
Sbjct 584 ACGAGG-ACATTCAGAGATTTATAACGAACACAAATGCGGAAGGTGCTCCTATAGTTCCT 642
Query 848 GTCTCAGCACAACTGAAATACAACATTGATGTGGTGTGCGAGTACATTGTCAAGAAGATC 907
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 643 GTCTCAGCACAACTGAAATACAACATCGATGTTGTGTGCGAGTACATAGTCAAGAAGATT 702
Query 908 CCAATCCCTGAGAGGAATTTTGTGTCACCCCCAA-ATATGATAGTGATTCGGTCTTTTGA 966
||||||||||||||| ||||||||||||| |||| | ||||| |||||||| ||||||||
Sbjct 703 CCAATCCCTGAGAGGGATTTTGTGTCACCTCCAAGA-ATGATTGTGATTCGTTCTTTTGA 761
Query 967 TGTCAACAAACCTGGTTATGAGGT-TGATGAGATCAAAGGTGGAGTTGCAGGTGGAAGTA 1025
|||||| |||||||| | ||| | | |||| || ||||||||||| |||||||||||||
Sbjct 762 TGTCAATAAACCTGGCTCTGA-CTATAATGATATGAAAGGTGGAGTCGCAGGTGGAAGTA 820
Query 1026 TCCTACGGGGTGTTTTGAGAGTCAACCAAT-TAATCGAAATCCGACCTGGTATCGTTACC 1084
|||| | ||||||||||| ||| | || |||| || || |||||||| || | |
Sbjct 821 TCCTCCAGGGTGTTTTGAAAGTGGGGC-ATATAATAGAGATTCGACCTGGAATTACTGGC 879
Query 1085 AAAGACGAGCGTGGCA-ACTCAAAATGCACTCCAATTTACTCTCGCATCATTTCACTCTA 1143
||||| |||| ||| | || | ||||||||||| |||||| | || || | |||| | ||
Sbjct 880 AAAGATGAGCATGG-AGACACTAAATGCACTCCCATTTACACGCGTATAACTTCATTGTA 938
Query 1144 CGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGAGGTCTAATAGG-AGTTGGAACAA 1202
|||||||||||||||||||||||||||||| || |||||| |||| || | |||| ||||
Sbjct 939 CGCGGAACAGAACGAGCTTCAGTTTGCTGTCCCGGGAGGTTTAATTGGGA-TTGGGACAA 997
Query 1203 -CAATGGACCCAACTCTCACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGGTGAAATC 1261
|| |||| || || || || |||| ||| | ||||||||||||||||||||||||||
Sbjct 998 GCA-TGGATCCTACGCTTACGCGTGGTGATAGGTTAGTTGGTCAAGTCCTTGGTGAAATA 1056
Query 1262 GGTTCACTTCCTGATGTATTTGTTGAACTCGAGGTGAACTT-CTTTCTTCT-ACGACGTT 1319
||| | || |||||||| | |||||| || || || || || | ||||| || ||||
Sbjct 1057 GGTACTCTCCCTGATGTCTATGTTGAGCTTGAAGT-AAGTTTCCAGCTTCTGAC-ACGTC 1114
Query 1320 TG-TTGGGAGTGA-GAACAAAGGGATCAGAGAAACAAGGGAAAGTGTCAAAGCTAA-CGA 1376
| |||| ||| | || |||||| | |||||| ||| || |||||||||||||| | |
Sbjct 1115 TCATTGG-AGTAAAGA-CAAAGGAAACAGAGAGGCAAATGAGAGTGTCAAAGCTAATC-A 1171
Query 1377 AAGGAGAGATTCTGATGCTCAACATTGGTTCGATGTCCACTGGAGCCAAAGTTGTAGGAG 1436
| |||||| | |||||| | || || || || ||||| || ||||| | ||| | ||||
Sbjct 1172 AGGGAGAGGTACTGATGTTGAATATCGGATCAATGTCGACGGGAGCTATGGTTATTGGAG 1231
Query 1437 TTAAAGTC-GATCTGGCT-AAACTGCAACTGACTGCGCC-TGTTTGTACCAGCAAAGGAG 1493
| |||| ||| || | ||| || ||||||| || || ||| || |||| || |||||
Sbjct 1232 T-AAAGAAAGATATGA-TGAAAGTGAAACTGAC-GCTCCCTGTATGCACCAACATAGGAG 1288
Query 1494 AGAAAGTGGCTCTAAG-CAGACGTGTGGAAAAGCATTGGCGTTTGATTGGTTGGGGTCAG 1552
||||||||||| |||| | | ||||| || | ||||||||||||||| ||| | ||||||
Sbjct 1289 AGAAAGTGGCTATAAGTC-GCCGTGTTGATAGGCATTGGCGTTTGATCGGTCGCGGTCAG 1347
Query 1553 ATTCAAGCTGGAACCACCAT 1572
||| | ||||||||||||||
Sbjct 1348 ATTGAGGCTGGAACCACCAT 1367
> Ahg925067 jgi|Araly1|925067|scaffold_200628.1
Length=1399
Score = 850 bits (460), Expect = 0.0
Identities = 693/805 (86%), Gaps = 18/805 (2%)
Strand=Plus/Plus
Query 197 ATAATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAA--AAAATTGGATGTAACTG 254
|||||| | ||||||||||||| ||||| ||||||| ||| || || ||||||| ||
Sbjct 18 ATAATGGGGCGGAACAAGGGTTTAGCTGAACAAGATC-TAAGTAAGCTT-GATGTAAATG 75
Query 255 TGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCA 314
|||||||||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct 76 AGCTACATCCTCTGTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCA 135
Query 315 TTGGTCATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTG 374
|||| ||||| || || |||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 136 TTGGACATGTTGCACACGGAAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTG 195
Query 375 TCCGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAGCTTGGATATGCAAACGCCA 434
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 196 TCCGTTTTAAGAATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCA 255
Query 435 AGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGTGCTACAAGGCCTACGGAA 494
|||||||| ||||||||||| | || |||||||||||||||||||||||| | || || |
Sbjct 256 AGATTTACCAATGTGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGA 315
Query 495 GT-GGAAAGGAAGAC-ACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAA 552
|| ||||| |||||| || || ||||| |||||||| |||||||| |||| |||||||||
Sbjct 316 GTGGGAAA-GAAGACAAC-CCAAATTGCGATGTCCCTGGATTTGAGAACTGCAAGATGAA 373
Query 553 ACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAAT 612
||| ||||||||||||| || || ||||||||||| || |||||||||||||| |||||
Sbjct 374 GCTACTGAGGCATGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAAT 433
Query 613 GCTTAATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATCGCTGCAAATGAAACT-T 671
||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||| | | |
Sbjct 434 GCTCAATGGGGCCGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATG-AGGTCT 492
Query 672 GTCCACAACCACAAAC-GTCTGAACATCTTGCTGCCGTTGAGATTATGCAACTTAAGCAT 730
|||| |||||||| || | |||||||||||||| |||| || || ||||| |||||||||
Sbjct 493 GTCCTCAACCACAGACAG-CTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCAT 551
Query 731 ATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCAT-TAATCAGCA 789
|| || ||||||||||||||||||||||| |||||||| || | ||||| || |||||
Sbjct 552 ATTATAATCCTTCAGAACAAGATTGATCTCATTCAAGAAAAAGCCGCCATCGAA-CAGCA 610
Query 790 CGA-GGCAATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCTG 848
| | |||||||||| |||||||| |||||| ||| || | ||| || || || ||||
Sbjct 611 C-ACAGCAATTCAGAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTG 669
Query 849 TCTCAGCACAACTGAAATACAACATTGATG-TGGTGTGCGAGTACATTGTCAAGAAGATC 907
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 670 TCTCAGCACAACTGAAATACAACATTGATGCTG-TGTGCGAGTACATTGTCAAGAAGATT 728
Query 908 CCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGATTCGGTCTTTTGAT 967
||||||||| | ||| ||||||||||||| ||||| |||||| | ||||| |||||||||
Sbjct 729 CCAATCCCTAAAAGGGATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGAT 788
Query 968 GTCAACAAACCTGGTTATGAGGTTG 992
||||| |||||||| ||||||||||
Sbjct 789 GTCAATAAACCTGGCTATGAGGTTG 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5