BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04180.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285 2056 0.0
Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1 907 0.0
> Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285
Length=1266
Score = 2056 bits (1113), Expect = 0.0
Identities = 1216/1267 (96%), Gaps = 2/1267 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGAGCGGCGATGTGTT 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAAAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGACCGGCGATGTGTT 60
Query 61 TGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCATCCGGTTTAGCTACAGCAGCTTGT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 TGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCTTGT 120
Query 121 CTACATGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCGTCACTG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CTACGTGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTCACTT 180
Query 181 TGGCAAAAACGAACCTACGATAGGCTCAAGCTTCACTTGCCCAAGAAATTCTGCCAATTA 240
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 181 TGGCAAAAACGAACCTACGACAGGCTTAAGCTTCACTTGCCCAAGAAATTCTGTCAATTG 240
Query 241 CCGAAAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGAT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGACAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGAT 300
Query 301 TACCTTGAGTCATACGCAAACCGGTTCGATATTAAACCGGAGTTTAATAAAAGCGTTGAG 360
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 301 TACCTTGAGTCATACGCAAACCGGTTCGAGATTAAACCGGAATTCAATAAAAGCGTCGAG 360
Query 361 TCTGCTCGGTTTGATGAAACTAGCGGGCTATGGAGGGTTAGAACAACCTCAGACGGAGAG 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TCTGCTCGGTTTGATGAAACCAGCGGGCTATGGAGGGTTAGAACAACCTCAGCCGGAGAG 420
Query 421 GAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTT 480
Query 481 GTCCCAGAGATTAATGGTCTTATGACGGAGTTTGACGGAGAAGTGATTCACGCTTGTGAG 540
||||| ||||||||||| |||| ||||||||||||||||||||| ||||| || ||||||
Sbjct 481 GTCCCGGAGATTAATGGGCTTAAGACGGAGTTTGACGGAGAAGTAATTCATGCATGTGAG 540
Query 541 TATAAGTCCGGCGAGAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCA 600
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATAAGTCCGGCGAAAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCC 600
Query 601 GGCATGGAAGTCTCTCTTGATCTTGCTAACCACAATGCAATTACTTCCATGGTCGTTAGA 660
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 601 GGCATGGAAGTCTCTCTTGATCTTGCTAATCACAATGCTATCACTTCCATGGTCGTTAGA 660
Query 661 AGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTG 720
Query 721 ATGATGATGAAGTGGCTACCTTTATGGCTCGTAGACAAGCTTCTGCTTATCTTATCGTGG 780
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 721 ATGATGATGAAGTGGCTACCTCTATGGCTCGTAGACAAGCTTCTGCTAATCTTATCGTGG 780
Query 781 -TTGGTTCTAGGGAGCTTATCAAACTATGGGCTTAAAAGGCCTGACATCGGCCCAATGGA 839
|| |||||||||||||||||||| |||||||| || ||||| ||||||||||| |||||
Sbjct 781 CTT-GTTCTAGGGAGCTTATCAAAGTATGGGCTCAAGAGGCCCGACATCGGCCCGATGGA 839
Query 840 GCTTAAAAGCATGACAGGAAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAA 899
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTCAAAAGCATGACAGGGAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAA 899
Query 900 ATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCT 959
Query 960 CGTAGATGGTCAGAAGCTAGATATCGACGCTGTGGTTCTCGCCACCGGTTATCGTAGCAA 1019
||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 960 AGTAGATGGTCAGAAGCTAGGTATCGACGCCGTGGTTCTCGCCACCGGCTATCGTAGCAA 1019
Query 1020 CGTCCCTTCTTGGCTTCAGGAAAGTGAGTTCTTTTCGAAAAATGGGTTTCCGAAATCGCC 1079
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1020 TGTCCCTTCTTGGCTTCAAGAAAGTGAATTCTTTTCGAAAAACGGGTTTCCGAAATCGCC 1079
Query 1080 GTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGG 1139
Query 1140 GTTGGCTGGAGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTGTGGAG 1199
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 ATTGGCTGGGGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTATGGAG 1199
Query 1200 AGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGT 1259
Query 1260 TGCTTAA 1266
|||||||
Sbjct 1260 TGCTTAA 1266
> Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1
Length=1278
Score = 907 bits (491), Expect = 0.0
Identities = 1037/1297 (80%), Gaps = 52/1297 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTC--AGAG-CGGCGATGT 57
|||||||| |||||||| || |||| |||||||| ||||||| | || || ||
Sbjct 1 ATGGAGAACATGTTTAGGCTTATGGGAAGTGAAG---ATTTCTCGGACAGAAAACGGTGC 57
Query 58 GTTTGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCATCCGGTTTAGCTACAGCAGCT 117
||||||| ||||||||||| ||||| ||||| || ||||| || |||| || || |||
Sbjct 58 ATTTGGGTTAACGGTCCGGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACGGCGGCT 117
Query 118 TGTCTACATGATCAAGGAG-TCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCGTC 176
|| || | || |||| | |||| || ||||| | |||||| ||||||||||||| ||
Sbjct 118 TGCCTCCGCGAGGAAGGCGTTCCC-TTTGTTGTATTGGAGAGAGCAGATTGCATAGCTTC 176
Query 177 ACTGTGGCAAAAACGAACCTACGATAGGCTCAAGCTTCACTTGCCCAAGAAA-TTCTGCC 235
||| ||||| |||||||| || ||||| |||| ||||| || || |||||| || || |
Sbjct 177 ACTATGGCAGAAACGAACTTATGATAGAATCAAACTTCATTTACCAAAGAAAGTT-TGTC 235
Query 236 AATTACCGAAAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCA 295
||||||| ||||||||||||||||| ||||||| ||||| ||||| ||| |||||||||
Sbjct 236 AATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAAGGACAGTTCA 295
Query 296 TCGATTACCTTGAGTCATACGCAAACCGGTTCGATATTAAACCGGAGTTTAATAAAAGCG 355
|||| ||||||||||| ||||||||| || || |||| || |||| || | | |
Sbjct 296 TCGAGTACCTTGAGTCCTACGCAAACAAATTTGAAATTACTCCTCAGTTCAACGAGTGTG 355
Query 356 TTGAGTCTGCTCGGTTTGATGAAACTAGCGGGCTATGGAGGGT-TAG--AACA---AC-- 407
| |||| ||||| | || ||||| || || |||||| | | || |||| |
Sbjct 356 TCCAGTCAGCTCGATACGACGAAACCAGTGGTCTATGGCGCATCAAGACAACATCTTCGT 415
Query 408 C-TC--AGACGGAG-AGGAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAG 463
| || ||| | ||||||||||||||| ||||||||| | ||||||||||| ||||
Sbjct 416 CTTCTTCCTCGGTGTCGGAGATGGAATATATCTGCCGGTGGCTAGTGGTGGCGACTGGAG 475
Query 464 AAAACGCCG-AACGTGTTGTCCCAGAGATTAATGGTCTTATGACGGAGTTTGACGGAGAA 522
||||||| | || | ||| | |||||||| |||| || | |||||||| |||| ||
Sbjct 476 AAAACGCGGAAAAG-GTTATTCCAGAGATCGATGGGCTCACAACGGAGTTCAACGGTGAG 534
Query 523 GTGATTCACGCTTGTGAGTATAAGTCCGGCGAGAAATTCAGAGGAAAGAGAGTTCTTGTC 582
||| | ||| | ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 535 GTGGTCCACTCGTGTGAGTATAAGTCCGGCGAGAAATACAGAGGAAAGAGTGTTCTTGTC 594
Query 583 GTCGGATGTGGAAACTCAGGCATGGAAGTCTCTCTTGATCTTGCTAACCACAATGC-AAT 641
||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| ||
Sbjct 595 GTCGGATGTGGAAACTCCGGCATGGAAGTTTCTCTTGATCTTGCAAATCACAATGCTAA- 653
Query 642 TACTTCCATGGTCGTTAGAAGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATC 701
| | |||||||| ||| | |||||||||||||| ||||| || |||||| | || |||||
Sbjct 654 TGCCTCCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAGAGAGATTCTAGGCAAATC 713
Query 702 AACATTT-GGAATCTCAGTGATGATGATGAAGTGGCTACCTTTATGGCTCGTAGACAAGC 760
| ||| | |||||| |||||| ||||||| ||| | ||| ||||||| |||||||||
Sbjct 714 GA-GTTTCGAAATCTCGGTGATGTTGATGAAATGGTTTCCTCTATGGCTAGTAGACAAGA 772
Query 761 TTCTGCTTATCTTATCG--TGGTTGGTTCTAGGG-AGCTT-ATCAAACTATGGGCTTAAA 816
| || || | || ||| ||| || || | ||| | || | |||| ||||||| ||||
Sbjct 773 TCCTACTGA--TTCTCGCATGGCTGATT-TTGGGAAATTTGA-CAAAGTATGGGC-TAAA 827
Query 817 -AGGCCTGACATCGGCCCAATGGAGCTTAAAAGCATGACAGGAAAGACGCCGGTTCTTGA 875
||||| | || |||||||||||||| || | | |||| ||||| || ||||||||
Sbjct 828 GAGGCCCAAGATGGGCCCAATGGAGCTCAAGATTGTCTCAGGGAAGACTCCAGTTCTTGA 887
Query 876 CATCGGTGCTC-TGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAAC 934
|| || || | ||||||| || ||||||||||| |||||||| || || | ||| |||
Sbjct 888 TATTGGAGC-CATGGAGAAAATCAAATCCGGCGAAGTAGAAATCGTTCCGGGAATTAAA- 945
Query 935 A-GTTCTCGCGTCA-CCACGTGGAGCTCGTAGATGGTCAGAAG-CTAGATATCGACGCTG 991
| |||||| ||| | |||||||||||| || ||||||||| || ||||| | ||||| |
Sbjct 946 AGGTTCTCTCGT-AGCCACGTGGAGCTAGTCGATGGTCAG-AGATTAGATCTTGACGCCG 1003
Query 992 TGGTTCTCGCCACCGGTTATCGTAGCAACGTCCCTTCTTGGCTTCAGGAAAGTGAGT-TC 1050
||||||||||||| ||||| ||||||||||| ||||| ||||| || |||| ||| | |
Sbjct 1004 TGGTTCTCGCCACGGGTTACCGTAGCAACGTACCTTCATGGCTCCAAGAAAATGA-TCTG 1062
Query 1051 TTTTCGAAAAATGGGTTTCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGA 1110
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TTTTCGAAAAACGGATTCCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGA 1122
Query 1111 -TTATACGCGGCCGGATTCACGAGAAAAGGGTTGGCTGGAGCATCAGTAGACGCCGTTAA 1169
|| |||||||| |||||||| || ||||| ||||| |||||||||| ||| ||||||||
Sbjct 1123 CTT-TACGCGGCTGGATTCACAAGGAAAGGATTGGCCGGAGCATCAGCAGATGCCGTTAA 1181
Query 1170 CATCGCTCAAGACATTGGAAATGTGTGGAGAGAAGAGACCAAACGACAGAAGATGAGAAG 1229
||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1182 CATCGCTAAAGACATTGGAAACGTGTGGAGAGAAGAGACAAAACGACAGAAAATGAGAAC 1241
Query 1230 AA-ATGTGGGTCACCGAAGATGCATCTCAGTTGCTTA 1265
| | ||||||||||| |||||||| |||||||||||
Sbjct 1242 ACGA-GTGGGTCACCGCAGATGCATTTCAGTTGCTTA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5