BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04190.1

Length=1334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919090 jgi|Araly1|919090|scaffold_100371.1                        268    6e-71


> Ahg919090 jgi|Araly1|919090|scaffold_100371.1
Length=268

 Score =  268 bits (145),  Expect = 6e-71
 Identities = 170/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  136  TTTCTTACAAACCTCTAGAAATAATGGCCGAGAAAGCAGGCAAGGCAACGAATGGTGGAG  195
            ||||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct  1    TTTCTTACAAAACTCGAGAAATGATGGCGGAGAAAGCAGGCAAGGCAACAAATGGTGGAG  60

Query  196  AAGCAGAGAAATCTCT-AAAGGAAAAAGGAAATGAGTTCTTCAAAGCTGGCAACTTTCTT  254
            |||||||||| ||||| ||| || ||||| || ||||||||||||||||||||||| |||
Sbjct  61   AAGCAGAGAAGTCTCTCAAA-GACAAAGGCAACGAGTTCTTCAAAGCTGGCAACTTCCTT  119

Query  255  AAAGCCGCAGCTCTCTATACTCAAGCCATCAAGCTCGATCCTTCTAACGCTACTCTTTAC  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  AAAGCCGCAGCTCTCTATACTCAAGCCATCAAGCTCGATCCTTCTAACGCTACTCTTTAC  179

Query  315  AG  316
            ||
Sbjct  180  AG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49902898353


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5