BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04220.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470398 jgi|Araly1|470398|fgenesh2_kg.1__352__AT1G04220.1 2519 0.0
Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500 872 0.0
> Ahg470398 jgi|Araly1|470398|fgenesh2_kg.1__352__AT1G04220.1
Length=1619
Score = 2519 bits (1364), Expect = 0.0
Identities = 1547/1634 (95%), Gaps = 17/1634 (1%)
Strand=Plus/Plus
Query 1 GTCTCGCTACTTTTGATTATCATTTAAAACCAAAAAACCTACCATGAATGAGAATCACAT 60
|||||| ||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 GTCTCGTTACCTTTGATTATCATTTAAAACCAAAAGA-CTACCATGAAGGAGAATCACAT 59
Query 61 TCAAAGTGATCACATGAACAACACCATTCATGTAACAAACAAAAAACTCCCAAACTTCCT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TCAAAGTGATCACATGAACAACACCATTCACGTAACAAACAAAAAACTCCCAAACTTCCT 119
Query 121 CTTATCCGTACGTCTCAAATATGTTAAACTTGGTTACCATTACCTAATCTCGAATGCCGT 180
|||||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 120 CTTATCGGTACGCCTTAAATACGTTAAACTCGGTTACCATTACCTAATCTCTAATGCCGT 179
Query 181 CTACATTCTCATACTCCCCGTCGGCCTCCTCGCCGCAACCTCCTCCTCCTTTAGTCTCAC 240
|||||| ||||| || ||| | | ||||||||||||||||||||||||||| | |||| |
Sbjct 180 CTACATCCTCATCCT-CCC-T-GTCCTCCTCGCCGCAACCTCCTCCTCCTTCAATCTCTC 236
Query 241 CGATCTCACACTCTTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTCTCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 237 CGATCTCACACTCTTATACAACCACCTTCTCAAATTCCACTTCCTCTCTTCCACTATATT 296
Query 301 CGCCGCTCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGC-AGAATCT 359
||| || ||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 297 CGCAGCCCTTCTTATCTTTCTAACCACCCTCTACTTCACAACTCGTCCTCGCAAG-ATAT 355
Query 360 TTCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCCTCCTCGATTTCGCTTGTTACAAACCCGACTCTTCTCTAATATGCACACGAGAAACGT 415
Query 420 TCATGGACCGGTCTCAGCGTGTCGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 479
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 416 TCATGGACCGGTCTCAACGTGTTGGTATCTTCACAGAAGACAACCTCGCTTTCCAACAAA 475
Query 480 AGATCCTCGAACGTTCCGGTCTTGGACAAAAGACTTACTTCCCGGAGGCTCTCTTACGTG 539
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 AGATCCTCGAACGCTCCGGTCTTGGACAAAAAACTTACTTCCCGGAGGCTCTCTTACGTG 535
Query 540 TCCCGCCTAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCCGCCGAATCCTTGTATGTCTGAAGCAAGGAAAGAAGCCGAGACGGTTATGTTTGGAG 595
Query 600 CTATAGACGCAGTGCTTGAGAAAACCGGAGTGAATCCTAAGGATATTGGGATACTTGTCG 659
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 596 CTATAGACGCAGTGCTTGAGAAAACAGGAGTGAAGCCTAAGGATATTGGGATACTTGTGG 655
Query 660 TGAATTGTAGCTTGTTTAATCCGACGCCTTCGTTATCGGCTATGATCGTGAATAAATATA 719
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 656 TGAATTGTAGCTTGTTTAATCCGACGCCTTCCTTATCAGCTATGATCGTGAATAAATATA 715
Query 720 AGCTCAGAGGAAACGTTTTGAGCTATAACCTTGGTGGAATGGGTTGTAGTGCTGGTCTTA 779
|||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 716 AGCTTAGAGGAAACATTTTGAGCTATAATCTTGGTGGGATGGGTTGTAGTGCTGGTCTTA 775
Query 780 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTTCAACCAAATTCATATGCACTAGTAG 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 TCTCCATTGATCTCGCTAAACAGCTTCTTCAGGTCCAACCAAATTCATATGCACTAGTAG 835
Query 840 TGAGCACAGAGAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGAGCACAGAAAACATAACCCTAAACTGGTATTTAGGCAACGACCGATCAATGCTTCTCT 895
Query 900 CAAACTGCATCTTCCGAATGGGTGGCGCCGCCGTTCTCCTCTCTAACCGCTCCTCCGACC 959
||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 896 CAAACTGTATCTTCAGAATGGGTGGCGCAGCCGTTCTCCTCTCTAACCGCTGCTCCGACC 955
Query 960 GCTGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACACACAAAGGATCTGACGACA 1019
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 956 GCCGCCGCTCCAAATACCAACTCATCCACACCGTCCGTACCCACAAAGGAGCTGACGACA 1015
Query 1020 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAACGACGACAACAAACAAATCGGTGTCT 1079
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 ACGCCTTTAACTGCGTTTACCAACGCGAAGACAGCGACGACAACAAACAAATCGGTGTCT 1075
Query 1080 CACTTTCCAAAAACCTAATGGCTATAGCTGGAGAAGCTCTCAAGACGAACATAACCACTC 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1076 CACTTTCCAAAAACCTAATGGCTATAGCCGGAGAAGCTCTCAAGACGAACATAACCACTC 1135
Query 1140 TGGGACCGCTAGTTCTACCAATGTCTGAACAACTTCTCTTTTTCGCAACACTAGTGGCGC 1199
| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1136 TCGGACCGCTAGTCCTTCCAATGTCCGAACAACTTCTATTTTTCGCAACACTCGTGGCGC 1195
Query 1200 GAAAAGTCTTTAATGTGAAGAAAATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTCG 1259
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1196 GAAAAGTCTTTAATGTGAAGAAAATCAAACCTTATATTCCTGATTTCAAGCTAGCATTCG 1255
Query 1260 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGCACTTCTGCATCCACGCGGGAGGCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGG 1315
Query 1320 AT-TTATCTGAGTGGCATATGGAACCTTCGAGGATGACTTTGAACCGGTTTGGAAATACT 1378
|| || ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 1316 ATCTT-TCTGAGTGGCATATGGAGCCTTCTCGGATGACTTTGAACCGGTTTGGGAATACT 1374
Query 1379 TCGAGTAGCTCGCTTTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1438
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TCGAGTAGCTCGCTGTGGTATGAGCTTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGA 1434
Query 1439 GGAGATAGGACTTGGCAGATTGCTTTTGGATCCGGTTTTAAGTGTAATAGTGCGGTTTGG 1498
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1435 GGAGATAGGACTTGGCAGATTGCTTTTGGGTCGGGTTTTAAGTGTAATAGTGCGGTTTGG 1494
Query 1499 AGAGCTTTGAGAACTATCGATCCGTCCAAGGAGAAGAAGAAGAAGACTAATCCTTGGATT 1558
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1495 AGAGCTTTGAGAACTATTGATCCGTCCAAGGAGAAGA---------CTAATCCATGGATT 1545
Query 1559 GATGAGATTCATGAGTTTCCCGTGCCGGTTCCAAGGACATCTCCGGTGACATCTTCCTCG 1618
|||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||
Sbjct 1546 GATGAGATTCATGAGTTTCCGGTGCCCGTTCCCAGGATATCTCCGGTGACATCTTCGTCG 1605
Query 1619 GAATCTCGATAGTT 1632
||||||||||||||
Sbjct 1606 GAATCTCGATAGTT 1619
> Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500
Length=813
Score = 872 bits (472), Expect = 0.0
Identities = 694/800 (87%), Gaps = 19/800 (2%)
Strand=Plus/Plus
Query 811 GGTTCAACCAAATTCATATGCACTAGTAGTGAGCACAGAGAACATAACCCTAAACTGGTA 870
||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 9 GGTGCAACCAAACTCCTACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 68
Query 871 TTTAGGCAACGACCGATCAATGCTTCTCTCAAACTGCATCTTCCGAATGGGTGGCGCCGC 930
||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 69 CTTAGGCAACGACCGATCAATGCTTCTCTCTAACTGCATCTTCCGTATGGGCGGAGCCGC 128
Query 931 CGTTCTCCTCTCTAACCGCTCCTCCGACCGCT-GCCGCTCCAAATACCAACTCATCCACA 989
|| || ||||| ||||||||||| || || | |||| || ||||| || ||||||||||
Sbjct 129 GGTACTTCTCTCGAACCGCTCCTCGGATCG-TAGCCGTTCAAAATATCAGCTCATCCACA 187
Query 990 CCGTCCGTACACACAAAGGATCTGACGACAACGCCTTTAACTGCGTTTACCAACGCGAAG 1049
|||| ||||| ||||||||| |||| |||||||| || ||| ||||||||||| ||||
Sbjct 188 CCGTTCGTACCCACAAAGGAGCTGATGACAACGCATTCGGCTGTGTTTACCAACGAGAAG 247
Query 1050 ACAACGACG-ACAACAAA----C-AAATCGGTGTCTCACTTTCCAAAAACCTAATGGCTA 1103
||||| ||| | || ||| | ||||||| || ||||| || |||||||||||||| |
Sbjct 248 ACAACAACGCAGAAGAAACCGGCAAAATCGGAGTATCACTCTCTAAAAACCTAATGGCAA 307
Query 1104 TAGCTGGAGAAGCTCTCAAGACGAACATAACCACTCTGGGACCGCTAGTTCTACCAATGT 1163
|||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||
Sbjct 308 TAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTCCTACCAATGT 367
Query 1164 CTGAACAACTTCTCTTTTTCGCAACACTAGTGGCGCGAAAAGTCTTTAATGTGAAGAAAA 1223
| |||||||||||||||||||| || || ||||| ||||||||||| || || |||||||
Sbjct 368 CCGAACAACTTCTCTTTTTCGCGACCCTCGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAA 427
Query 1224 TAAAACCTTATATTCCTGATTTCAAGCTAGCTTTCGAGCACTTCTGCATCCACGCGGGAG 1283
|||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 428 TAAAGCCTTACATTCCCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAG 487
Query 1284 GCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGGATTTATCTGAGTGGCATATGGAAC 1343
| ||||| |||||||| ||||| |||||||| ||||||||||| || ||||||||||| |
Sbjct 488 GTAGAGCCGTGCTCGACGAGATAGAGAAGAACTTGGATTTATCCGAATGGCATATGGAGC 547
Query 1344 CTTCGAGGATGACTTTGAACCGGTTTGGAAATACTTCGAGTAGCTCGCTTTGGTATGAGC 1403
| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 548 CATCGAGGATGACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGC 607
Query 1404 TTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCTT 1463
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 608 TTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCGT 667
Query 1464 TTGGATCCGGTTTTAAGTGTAATAGTGCGGTTTGGAGAGCTTTGAGAACTATCGATCCGT 1523
| ||||| |||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 668 TCGGATCGGGTTTTAAGTGTAACAGTGCGGTTTGGAAAGCTTTGAGAACGATTGATCC-- 725
Query 1524 CCAAGGAGAAGAAGAAGAAGACTAATCCTTGGATTGATGAGATTCATGAGTTTCCCGTGC 1583
|| | || || ||||| ||||||| ||||||||||||||| |||| ||||| || |
Sbjct 726 --AATG-GACGA-GAAGA---CTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTC 778
Query 1584 CGGTTCCAAGGA-CATCTCC 1602
||||| |||| || ||||
Sbjct 779 AAGTTCCTAGGATCA-CTCC 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5