BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04230.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470399 jgi|Araly1|470399|fgenesh2_kg.1__353__AT1G04230.1 1999 0.0
Ahg915861 jgi|Araly1|915861|Al_scaffold_0008_612 363 3e-99
> Ahg470399 jgi|Araly1|470399|fgenesh2_kg.1__353__AT1G04230.1
Length=1321
Score = 1999 bits (1082), Expect = 0.0
Identities = 1264/1345 (94%), Gaps = 40/1345 (3%)
Strand=Plus/Plus
Query 45 TCATCACTTCGGCGATGGCGCACGGCGGATATGCGAGGCGGAGAGTTGCAGAGCGGAAGA 104
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TCATCACTTGGGCGATGGCGCACGGCGGATATGCGAAGCGGAGAGTTGCAGAGCGGAAGA 60
Query 105 CGACGGCAGGAACTAGTCGGAGATCGAAAGGATTGCGCGTGGAGAAAAAACCGAAGAATT 164
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 61 CGACGGCAGGAACTAGTCGGAGATCTAAAGGATTACGCGTGGAGAAGAAACCGAAGAATT 120
Query 165 CCTCTCTCAAGAATCAAATTCGTTCCATCGGTCGCATGATTCGTAAAGATCTTCCTCCTG 224
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CCTCTCTCAAGAATCAAATTCGTTCCATCGGTCGCATGATTCGTAAAGACCTTCCTCCTG 180
Query 225 AAGTAAGAGAGGCTCTAGAAAAGAAGTTGGATGATCTGAAGAAGCAGCAAGATATCCATT 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTAAGAGAGGCTCTAGAAAAGAAGTTGGATGATCTGAAGAAGCAGCAAGATATCCATA 240
Query 285 TCCGTCTTGCTTTTGAACGTAAAATCTTCCTAAGGAACAGAAAGGTCAGATTCTTCGAGC 344
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCCGTCTTGCTGTTGAACGTAAAATCTTCCTAAGGAACAGAAAGGTCAGATTCTTTGAGC 300
Query 345 GGAGAAAGATTGAAAGGAGTATAAGACGTCTCGAGAAGCTACATCGGAGTACATCTGGTG 404
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 301 GGAGAAAGATCGAAAGGAGTATAAGACGTCTCGAGAAGCTACAACGAAGTACATCTGGTG 360
Query 405 GTTATGTGCAAGATGCAGAAATAGGTGGGCAACTCAATAGACTCAAAGAAGACCTTGAAT 464
|| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 361 GTCATGTGCAAGATGCAGAAATTGGTGGGCAACTCAATAAACTCAAAGAAGACCTTGAAT 420
Query 465 ATGTTAGGTTCTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGATCTGATGATT 524
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 ATGTTAGGTTCTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGAGGTGATGATT 480
Query 525 TACAAGTATCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAACATAATTTTTG 584
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 481 TACAAGTATCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAATATAATTGTTG 540
Query 585 CTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTTTTGGACC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTTTTGGACC 600
Query 645 TGAGTGACGATGACTTCTTTGTCAACGGAAGTTCAAGTGACGAAGCAGATGCGGATGATG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGAGTGACGATGACTTCTTTGTCAACGGAAGTTCAAGTGACGAAGCAGATGCGGATGATG 660
Query 705 AGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTCTGGTAGAGCAACATCGA 764
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 661 AGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTTTGGCAGAGCAACATCGA 720
Query 765 GCATGTCCAGTGACGAAAGAAATCAGAAGCCATACTCTACTAGGGTTTTAATGCCACCAC 824
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 GCATGTCTAGTGACGAAAGAAATCAGAAGCCATACACTACTAGGGTTTTAATGCCACCAC 780
Query 825 CACGGTCAAGGTTTGCATCAACATCTCGTCAGTATTCATCTGTGAAGAGGAATGAGATAC 884
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 CACGGTCAAGGTTTGCATCAACATCTCGTCAGTATTCATCTCTGAAGAGGAATGAGATAC 840
Query 885 CTTCCTCCAGCAACACTTCACATAGAAGAAGCCAGTCTTCACATGCTGCCACTAGTTCGC 944
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 CTTCCTCCAGCAACACTTCACATAGAAGAAGCCAGTCTTCACATGCTGCCACAAGTTCGC 900
Query 945 ATACAAGTCAGAGTAGCAACTTGAGTTCTAATTCTGATGCTCACAAACCCAAGAGGAAGA 1004
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATACAAGTCAAAGTAGCAACTTGAGTTCTAATTCTGATGCTCACAAACCCAAGAGGAAGA 960
Query 1005 GAAGGCCTAAGAAGAAGAAGCTACAGGCG--T-------GAAC---AA-GG--TCTCTCC 1049
||||||||||||||| ||||| ||||| | | || | || || |||||||
Sbjct 961 GAAGGCCTAAGAAGAGGAAGCAACAGGTGAGTCCCTCTTGAGCGTGAACGGGGTCTCTCC 1020
Query 1050 CGCCATGTCTGAGAAAACGAAGAAGCTCGTAACACAGTTCATCAATTCCAAAAGCTTCAC 1109
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 CGCCATGTCTGAGAAAACGAAGAAGCTCGTAACACAGTTCATCAATTCCTAAAGCTTCAC 1080
Query 1110 TCAT-TACTACGGCCTGTCTAGTCTTACATCTTCTGATTGGATCTAATGCGTATATATAT 1168
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1081 -CAAGTACTACGGCCTGTCTAGTCTTACATCTTCTGATTGGATCTAATTCGTATATATAT 1139
Query 1169 GTTGCCATGAAAGCAGAGAGGTAGGTGTCTGTTGTTTTTGGCTGATGAAATGAACCCTAA 1228
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 GTTGCCATGAAAGCAGAGAGATAGGTTTCTGTTGTTTTTGGCTGATGAAATGAACCCTAA 1199
Query 1229 GCTTTGGGCAAAACGTATTTCTCATATAAGATAAGttttttttttGTTTCTATTGATTTA 1288
|||||||||||||||||||||||||||||| | |||||||||| | | |
Sbjct 1200 GCTTTGGGCAAAACGTATTTCTCATATAAG-T---TTTTTTTTTT----C-A--G----- 1243
Query 1289 TGTTCATGTTGGCTTTGATCGAATTGTATTAATTAATGGGAGTAATCCAACCTCGACCAT 1348
|| | | | |||||||||||||| || ||||||||||||| ||||||| | ||||||
Sbjct 1244 -GT-C--G--G-CTTTGATCGAATTGAATCAATTAATGGGAGTGATCCAACGTAGACCAT 1296
Query 1349 CAATAATATGATCTAAGAACTAGTG 1373
||||||||||||||||||||| |||
Sbjct 1297 CAATAATATGATCTAAGAACTTGTG 1321
> Ahg915861 jgi|Araly1|915861|Al_scaffold_0008_612
Length=738
Score = 363 bits (196), Expect = 3e-99
Identities = 414/516 (80%), Gaps = 28/516 (5%)
Strand=Plus/Plus
Query 286 CCGTCTTGCTTTTGAACGTAAAATCTTCCTAAGGAACAGAAAG-GTCAGATTCTTCGAGC 344
|||||||||| ||||||||||||| ||||| |||||||||||| | || ||||| |
Sbjct 240 CCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATTAAG-TTCTT---TC 295
Query 345 GGAGAAAGATTGAAAGGAGTATAAGACGTCTCGAGAAGCTACATCGGAGTACATCTGGTG 404
|||||||||| ||||| || || |||||||| |||||| |||| || | | |||| ||
Sbjct 296 GGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATC---TG 352
Query 405 GTTATGTGCAAGATGCAGAAATAGGTGGGCAACTCAATAGACTCAAAGAAGACCTTGAAT 464
| ||||| |||| |||| |||| || |||||| | || ||||||||||||||||||||
Sbjct 353 CTCATGTGGGAGATACAGATATAGCTGAGCAACTTAGTAAACTCAAAGAAGACCTTGAAT 412
Query 465 ATGTTAGGTT-CTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGATCTGATGAT 523
|||||||| | |||||| || || |||| ||||||||| || |||| |||| |||| |||
Sbjct 413 ATGTTAGGGTACTTCCCGAAAAACGAGA-GTATGTATCTCTTTTTACTGGAGCTGAGGAT 471
Query 524 TTACAAGTA-TCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAACATAATTTT 582
| | | ||| | |||| |||| ||||| |||||||||| ||||||||||| || ||| |
Sbjct 472 TCAGAGGTAAT-TGAGAAGAGAGGTAAAATGCGGAAGCAGATCAAAGCCAATATTATTGT 530
Query 583 TGCTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTT-T--- 638
||||||||| |||||||||||||| ||| | || || || ||||| |||| |||| |
Sbjct 531 TGCTGCTGCTAGTGGGAAAGAGTTAGAA-ACAC-GG-AGTGAAGACGATGGTCTTCTGGA 587
Query 639 T--GGACCTGAGTGACGATGACTTCTTTG-TCAACGGAAGTTCAAGTGACGAAGCAGATG 695
| |||||| ||||| ||||| ||||||| | || ||| ||||||| || ||||||||||
Sbjct 588 TCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGA-GTTCAAGCGATGAAGCAGATG 646
Query 696 CGGATGATGAGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTCTGGTAGAG 755
| |||||||| | ||| ||||||||| || | | || | || ||||||||||||||||||
Sbjct 647 CAGATGATGAATTGACCGATAAAAGCGCAGA-G-GCTGCTT-CTAGTGCTTCTGGTAGAG 703
Query 756 CAACATC-GAGCATGTCCAGTGACGAAAGAAATCAG 790
|||| || | || |||| ||| | ||||| ||||||
Sbjct 704 CAACTTCTG-GCGTGTCTAGTTATGAAAGGAATCAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5