BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04240.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919100 jgi|Araly1|919100|scaffold_100381.1 987 0.0
Ahg494639 jgi|Araly1|494639|fgenesh2_kg.8__455__AT5G43700.1 416 2e-115
> Ahg919100 jgi|Araly1|919100|scaffold_100381.1
Length=614
Score = 987 bits (534), Expect = 0.0
Identities = 588/614 (96%), Gaps = 3/614 (0%)
Strand=Plus/Plus
Query 213 CTCCTGCAATTCTTGAAGAAATGGATGAGTTTGTTAACCTCAAGGAAACAGAGCTGAGGC 272
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CTCCTGCAATTCTTGAAGAAATGGATGAGTTTGTTAACCTCAAGGAAACGGAGCTGAGGC 60
Query 273 TGGGATTACCGGGAACAGATAATGTATGTGAAGCAAAAGAGAG-A--GTTTCTTGCTGTA 329
|||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 61 TGGGATTACCAGGAACAGACAATGTATGCGAAGCAAAAGAGAGCATTATTTCTTGCTGTA 120
Query 330 ATAACAACAATAAGAGAGTACTATCAACTGATACTGAGAAGGAGATTGAATCATCATCAA 389
||| |||||||||||||| | |||||| ||||| ||||||||||| ||||||||||||||
Sbjct 121 ATAGCAACAATAAGAGAGCATTATCAAGTGATAATGAGAAGGAGAATGAATCATCATCAA 180
Query 390 GGAAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGAT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGAT 240
Query 450 CTTACAGGAAGAACAACATTCAGAGTAAGAAGAATGAATCTGAGCATGAGGGTCAAGGAA 509
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 241 CTTACAGGAAGAACAACATTCAGACAAAGAAGAATGAATCTGAGCATGAGGGTCACGGAA 300
Query 510 TCTATGTGAAAGTAAGTATGGATGGTGCACCATACTTGAGGAAAATAGATCTGAGTTGTT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTATGTGAAAGTAAGTATGGATGGTGCACCATACTTGAGGAAAATAGATCTGAGTTGTT 360
Query 570 ACAAAGGATACTCAGAGTTGCTTAAAGCTTTAGAAGTGATGTTCAAATTCTCTGTGGGAG 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAAAGGATACTCAGAGTTGCTTAAAGCTTTAGAAGTGATGTTCAAATTCTCTGTGGGAG 420
Query 630 AGTACTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTGCCTACTTATGAAGACAAAG 689
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTATTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTGCCTACTTATGAAGACAAAG 480
Query 690 ATGGTGATTGGATGCTCATTGGTGATGTTCCATGGGAGATGTTCATATGTACGTGCAAGA 749
|||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||
Sbjct 481 ATGGTGATTGGATGCTCATTGGAGACGTTCCATGGGAGATGTTTATATGTACTTGCAAGA 540
Query 750 GACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAGGCTGTGGTGTATGAGATATAT 809
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAAGCTGTGGTGTATGAGATATAG 600
Query 810 CTTCAAGAAATCTA 823
||||| |||| |||
Sbjct 601 CTTCACGAAACCTA 614
> Ahg494639 jgi|Araly1|494639|fgenesh2_kg.8__455__AT5G43700.1
Length=1112
Score = 416 bits (225), Expect = 2e-115
Identities = 408/493 (83%), Gaps = 26/493 (5%)
Strand=Plus/Plus
Query 317 GTTTCTTGCTGTAATAA-CAACAATAAGAGAGTACTATC-AACTGATACTGAGAAGGAGA 374
||||||||| | || || |||||| ||||| | || | || |||||||||||| ||||
Sbjct 312 GTTTCTTGC-GGAAAAAGCAACAA-AAGAG-CT-TTACCTAA-TGATACTGAGAAAGAGA 366
Query 375 TTGAATCATCATCAAGG-AAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGA 433
||||||| || | || ||||| ||||| | |||||| |||||||||||||||||||
Sbjct 367 TTGAATC--CA-C-TGGAAAAACCGAAACCGCTTCTCCTCCAAAGGCTCAGATTGTTGGA 422
Query 434 TGGCCACCAGTTAGATCTTACAGGAAGAACAACATTCAGAGTAAGAAGAATGAATCTGAG 493
||||||||||||||||||||||| |||||||| ||||| | ||||| |||||||||||
Sbjct 423 TGGCCACCAGTTAGATCTTACAGAAAGAACAATATTCAAACAAAGAATAATGAATCTGA- 481
Query 494 CATGAGGGTCAAGGAATCTATGTGAAAGTAAGTATGGATGGTGCACCATA-CTTGAGGAA 552
| | | |||||||| |||||||||||| |||||||||||||| ||||| || |||||
Sbjct 482 -A-G-G--TCAAGGAAACTATGTGAAAGTGAGTATGGATGGTGCTCCATATCTA-AGGAA 535
Query 553 AATAGATCTGAGT-TGTTACAAAGGATACTCAGAGTTGCTTAAAGCT-TTAGAAGTGATG 610
|||||||| | | ||| | ||| |||| |||||||| | ||| | || ||| |||
Sbjct 536 GATAGATCTAACTATGT-ATAAACAATACCCAGAGTTGATGAAATCACTT-GAAAACATG 593
Query 611 TTCAAATTCTCTGTGGGAGAGTACTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTG 670
|| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 594 TTTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTT 653
Query 671 CCTACTTATGAAGACAAAGATGGTGATTGGATGCTCATTGGTGATGTTCCATGGGAGATG 730
|||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 654 CCTACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATG 713
Query 731 TTCATAT-GTACGTGCAAGAGACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAGG 789
|| | | || | || ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 714 TTTGTTTCGT-CTTGTAAGAGGTTAAGGATCATGAAAGGATCAGAAGTGAAAGGTTTAGG 772
Query 790 CTGTGGTGTATGA 802
| |||||| |||
Sbjct 773 TTCTGGTGTTTGA 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5