BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04250.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 1672 0.0
Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 80.5 2e-14
Ahg932229 jgi|Araly1|932229|scaffold_400217.1 71.3 1e-11
> Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1
Length=1037
Score = 1672 bits (905), Expect = 0.0
Identities = 1004/1050 (96%), Gaps = 14/1050 (1%)
Strand=Plus/Plus
Query 1 AGACAGAGATATAATACAGACTCATCTCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGACAGAGATATAATACAGACTCATATCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60
Query 61 ATTTTTCCATCTTCCTCATCACCTTCCCAAGAAGAAGAACACCAAAGAAGAAGAAAGGTT 120
|||||||||| ||||||||||||||||| | |||||| | | ||| ||||||||| ||
Sbjct 61 ATTTTTCCATTTTCCTCATCACCTTCCC-A-AAGAAG-A-A--GAAG-AGAAGAAAGTTT 113
Query 121 AATAATGATGGGCAGTGTCGAGCTGAATCTGAGGGAGACTGAGCTGTGTCTTGGTCTTCC 180
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 114 AATAATGATGGGCAGTGTCGAGCTGAATCTGAAGGAGACTGAACTGTGTCTTGGTCTTCC 173
Query 181 CGGTGGAGATACAGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CGGTGGAGATACGGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 233
Query 241 TCTGAAGCTAAATCTGAATAATGAGCCTGCAAACAAGGAAGGATCTACGACTCATGACGT 300
||||||||| ||||| || |||||||||| |||||||||||| |||||||||||||||||
Sbjct 234 TCTGAAGCTGAATCTTAACAATGAGCCTGAAAACAAGGAAGGGTCTACGACTCATGACGT 293
Query 301 CGTGACTTTTGATTCCAAGGAGAAGAGTGCTTGTCCTAAAGATCCAGCCAAACCTCCGGC 360
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
Sbjct 294 CGTGACTTTTGATTCCAAGGAGAAGAGTTCTTGTCCCAAAGATCCAGCCAAGCCTCCTTC 353
Query 361 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 413
Query 421 CTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTATCAATGGACGG 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 414 GTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTGTCAATGGACGG 473
Query 481 AGCACCGTACTTGAGGAAAATCGATTTGAGGATGTATAAAAGCTACGATGAGCTTTCTAA 540
||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 474 AGCACCGTACTTGAGGAAAGTAGATTTGAGGATGTATAAAAGCTACGACGAGCTCTCTAA 533
Query 541 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGCAAACATGGAGGAGAAGAAGGAAT 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 534 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGAAAACATGGAGGAGAAGAAGGAAT 593
Query 601 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTGGTGAATAGCTGGGACTATGTTCC 660
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 594 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTAGTGAATAGTTGGGACTATGTTCC 653
Query 661 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 713
Query 721 CGTCGATACATGCAAGCGTTTACGTCTCATGAAAGGATCGGATGCCATTGGTCTCGCTCC 780
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 714 CGTTGATACATGCAAGCGTTTACGTCTCATGAAAGGATCTGATGCCATTGGGCTCGCACC 773
Query 781 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTCAAATTAAAAGGATAAGTGGT-A 839
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 774 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTC--A--AAAAGGATAAGTGGTAA 829
Query 840 TCGATTATATATTTGATTAACACATTGATTGGTGTTAATTGCTCttttttttCTTACGAT 899
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 830 T-GATTATATATTTGATTAACACATTGATTGGTGTTAATTG-TTTTTTTTTTCTTACGAT 887
Query 900 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 947
Query 960 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1007
Query 1020 GGAAAATGTGTAATAATTTGAACATCCTAT 1049
|||||||||||||||||||||||||| |||
Sbjct 1008 GGAAAATGTGTAATAATTTGAACATCTTAT 1037
> Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1
Length=1201
Score = 80.5 bits (43), Expect = 2e-14
Identities = 70/82 (85%), Gaps = 5/82 (6%)
Strand=Plus/Plus
Query 350 AAACCTCCGGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAA 408
||||| || |||||||||||||||||||||||||||||||| | |||| | ||| |||||
Sbjct 361 AAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAA 419
Query 409 CGTGATGGTTTCCTGCCAAAAA 430
||| ||| | || ||||||||
Sbjct 420 CGTCATG-T--CCGGCCAAAAA 438
> Ahg932229 jgi|Araly1|932229|scaffold_400217.1
Length=982
Score = 71.3 bits (38), Expect = 1e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 663 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGG 712
|||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 805 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTTGGAGATGTCCCTTGG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5