BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04260.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470402 jgi|Araly1|470402|fgenesh2_kg.1__356__AT1G04260.1 981 0.0
> Ahg470402 jgi|Araly1|470402|fgenesh2_kg.1__356__AT1G04260.1
Length=680
Score = 981 bits (531), Expect = 0.0
Identities = 629/673 (93%), Gaps = 19/673 (3%)
Strand=Plus/Plus
Query 16 TTGTTCCTGAGAAATTCTAGGGTTTCTGAAATCGAGGAGAGATCCAATCGGCAATGGCGA 75
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1 TTGTTCCTGAGAATTTCTAGGGTTTCTGAAATCCAGGAGAGATCCAATC-GCAATGGCTA 59
Query 76 ATCAAGTGATCACCGGAATCAAAGAAACAGCTCAGTCAATTACTGGAGCGGCTCGTCCAT 135
|||||||||||||||||||||| ||||||||||| || ||||| || |||||||||||||
Sbjct 60 ATCAAGTGATCACCGGAATCAAGGAAACAGCTCAATCGATTACCGGCGCGGCTCGTCCAT 119
Query 136 GGGGCGATTTCCTCGATCTTTCCGCCTTCAGC-TTCCCTTCCTCCATCGCCGATGCAACA 194
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 120 GGGGCGATTTCCTCGATCTTTCCGCCTTCAGCGTT-CCTTCCTCCATCGCCGATGCCACA 178
Query 195 ACTCGCGTAACTCAGAACCTGACTCACTTCCGCATCAACTACAGTATCATTCTCTCTATC 254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 ACTCGCGTAACTCAGAACCTGACTCACTTCCGCATCAACTACAGTATCATTCTCTCAATC 238
Query 255 CTCCTAGGTCTAACCCTAATCACACGTCCAATCGCCATCCTCGCGTTTATAGCCGTTGGC 314
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 239 CTCCTAGGTCTAACCCTAATCACACGTCCCATCGCCATCCTCGCGTTTATCGCCGTTGGC 298
Query 315 TTAGCTTGGTTCTTCCTCTACTTCGCTCGCGAGGAGCCACTCACGATCTTCGGATTCACT 374
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTAGCGTGGTTCTTCCTCTATTTCGCTCGCGAGGAGCCACTCACGATCTTCGGATTCACT 358
Query 375 ATTGATGACGGCATCGTCGCTGTGCTTCTCATTGGTCTTTCGATTGGGTCGCTAGTTACC 434
||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 ATTGACGACGGAATCGTGGCTGTGCTTCTCATCGGTCTTTCGATTGGGTCGCTAGTTACC 418
Query 435 ACCGGAGTTTGGCTCAGAGCTCTCACCACCGTTGGATTTGGTGTTCTGGTTTTGATCTTA 494
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCGGAGTTTGGCTTAGGGCTCTCACCACCGTTGGATTTGGTGTTCTGGTTTTGATCTTA 478
Query 495 CACGCTGCGTTAAGAGGAACGGATGATCTTGTGAGTGACGATCTGGAATCACCTTATGGA 554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CACGCTGCGTTGAGAGGAACGGATGATCTTGTGAGTGACGATCTGGAATCACCTTATGGA 538
Query 555 CCGATGCTCTCTACCTCTGGCGGTGGTAACGACGGTGCTCGTGGTGATTACAGTGGAATC 614
||||||||||||||| | ||| || | | | ||||||||||||||||||||
Sbjct 539 CCGATGCTCTCTACC---GACGG------CG-C--T-C--GTGGTGATTACAGTGGAATC 583
Query 615 TGATCAACACGATTTGATAATG-Agtttggggatttagggttttgttgttttgtaaattg 673
|||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 584 TGATCAACACGATTTGATAATGGAATTTGGGGATTTAGGGTTTTGTTGTGTTGTAAATTG 643
Query 674 tcattgtttgttt 686
||||||||| |||
Sbjct 644 TCATTGTTTCTTT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5