BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04270.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1 1157 0.0
Ahg940413 jgi|Araly1|940413|scaffold_600957.1 582 1e-165
Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1 468 3e-131
> Ahg470404 jgi|Araly1|470404|fgenesh2_kg.1__358__AT1G04270.1
Length=729
Score = 1157 bits (626), Expect = 0.0
Identities = 702/737 (95%), Gaps = 11/737 (1%)
Strand=Plus/Plus
Query 2 TATTTTTCTCTTGCAAAGACCTCTCAGCAGCCAACGACAGTTATCAAAGCTTAAGCCGTT 61
||||||||||||||||||| | |||||||||| | ||||||||| ||||||||||||||
Sbjct 1 TATTTTTCTCTTGCAAAGA-C-CTCAGCAGCC-A--ACAGTTATC-AAGCTTAAGCCGTT 54
Query 62 TTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTG 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTG 114
Query 122 CTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCG 181
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 CTGCTGGAGTGCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAGAGGAGTTGATCTCG 174
Query 182 ATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTA 241
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 175 ATGCTCTTCTTGACATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGCA 234
Query 242 GAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAG 301
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 235 GAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAG 294
Query 302 CGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACA 361
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 295 CGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCTGTGAGAACCCACTTGAGGAACA 354
Query 362 TGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCA 421
|| |||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 355 TGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGTTTACAATGGTAAGACTTTCA 414
Query 422 ACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCAT 481
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCAT 474
Query 482 ACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTC 534
Query 542 CCCTTAAGTGAAAAGCTTCTATT-GGGGAATGTGTT-TACTTGCTCGTTATATGTGGATC 599
| ||||||||||||||||||||| ||||| || ||| | |||| ||||||||||||||||
Sbjct 535 CTCTTAAGTGAAAAGCTTCTATTTGGGGA-TGGGTTAT-CTTGTTCGTTATATGTGGATC 592
Query 600 TAAGTACGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTT-AGAAGCTTT 658
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 593 TAAGTATGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTTTAGATGTTTT 652
Query 659 CTCAACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCat 718
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CTCGACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCAT 712
Query 719 tttggatttttgttatg 735
|||||| ||||||||||
Sbjct 713 TTTGGAGTTTTGTTATG 729
> Ahg940413 jgi|Araly1|940413|scaffold_600957.1
Length=578
Score = 582 bits (315), Expect = 1e-165
Identities = 431/487 (89%), Gaps = 7/487 (1%)
Strand=Plus/Plus
Query 70 TTATCCTTTTGCTGAGATCCAATC-ATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGG 128
|||||| || || ||||||||| | ||||| ||||| |||||||||||||| || || ||
Sbjct 45 TTATCC-TTCGCCGAGATCCAA-CAATGGCTGATGTCGAACCAGAGGTTGCAGCAGCAGG 102
Query 129 AGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCT 188
|||||| || ||||| ||||| ||||| || ||||||| |||||| ||||||||||||||
Sbjct 103 AGTTCCAAAAAAGAGAACGTTCAAGAAATTCGCCTTCAGAGGAGTCGATCTCGATGCTCT 162
Query 189 TCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTT 248
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 163 TCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGTAGAAGGTT 222
Query 249 CTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAG 308
||||||||| ||||| || ||||| |||||| |||||||||| || | || ||||||||
Sbjct 223 CTCTAGAGGATTGACGAGAAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAG 282
Query 309 GGAGGCACCA-CAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCA 367
||||||||| | |||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 283 AGAGGCACCAGCT-GGTGAGAAGCCAGAACCAGTGAGAACCCACCTAAGGAACATGGTCA 341
Query 368 TCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGG 427
| || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 342 TTGTGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAATGGAAAGACTTTCAACCAAG 401
Query 428 TTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGC 487
||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||
Sbjct 402 TTGAGATCAAGCCTGAGATGATTGGACATTACCTTGCTGAATTCTCTATCTCGTACAAGC 461
Query 488 CGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCC-CTT 546
| || ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||| ||
Sbjct 462 CAGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACTCACTCCTCCAGGTTCAT-CCCTCTC 520
Query 547 AAGTGAA 553
|||||||
Sbjct 521 AAGTGAA 527
> Ahg487766 jgi|Araly1|487766|fgenesh2_kg.6__900__AT5G09500.1
Length=623
Score = 468 bits (253), Expect = 3e-131
Identities = 384/448 (86%), Gaps = 6/448 (1%)
Strand=Plus/Plus
Query 109 CCAGAGGTTGCTGCTGCTGGAGTTC-CCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAA 167
|||||||||||||| |||||| || || ||||| ||||| || |||||| | ||||
Sbjct 51 CCAGAGGTTGCTGCGGCTGGA-ATCGTGAAAAAGAGAACGTTCAAAAAGTTTTCTTTCAG 109
Query 168 AGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTC 227
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 110 AGGAGTTGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTCTTCCC 169
Query 228 TTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAA 287
||| ||||| |||||||||||||||||||| ||||| |||||||| |||||| |||| ||
Sbjct 170 TTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCAA 229
Query 288 GAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCAGTGAGAA 346
||| ||| | |||||||||| || |||||| | || |||||||||| | |||||||||
Sbjct 230 GAAACTGCGCAAAGCGAAAATTGAAGCACCAGCC-GGAGAGAAGCCAGCAGCAGTGAGAA 288
Query 347 CCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACA 406
||||| | ||||||||| |||| || |||||||||||||||||| |||| || || ||||
Sbjct 289 CCCACCTAAGGAACATGGTCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 348
Query 407 ACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTG 466
| ||||||||||| ||||| || |||||||| || ||||||||||| || ||| ||||||
Sbjct 349 ATGGAAAGACTTTTAACCAAGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTG 408
Query 467 AGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACT 526
||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| | |
Sbjct 409 AGTTCTCAATCTCATATAAGCCGGTTAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATT 468
Query 527 CTTCCAGATTCATTCCC-CTTAAGTGAA 553
| ||||| || || ||| || |||||||
Sbjct 469 CCTCCAGGTTTAT-CCCTCTCAAGTGAA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5