BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04280.1 Length=1925 Score E Sequences producing significant alignments: (Bits) Value Ahg910096 jgi|Araly1|910096|Al_scaffold_0001_350 2163 0.0 > Ahg910096 jgi|Araly1|910096|Al_scaffold_0001_350 Length=1440 Score = 2163 bits (1171), Expect = 0.0 Identities = 1357/1447 (94%), Gaps = 11/1447 (1%) Strand=Plus/Plus Query 276 ATGGGGTATAAAGATGTCAAAATCGCCCCTTTGATTGAGAGGAAAGACTCAGGTCGACGA 335 ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGGGTATAAAGATGTGAAAATCTCCCCTTTGATTGAGAGGAAAGATTCAGGTCGACGA 60 Query 336 TCAAACCTAGAGAGATTCTCCCACTATGTTGCAAGGCAGCTCGGATTTGAGGATCCAAAT 395 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 61 TCAAACCTCGAGAGATTCTCCCACTATGTTGCAAGGCAGCTAGGATTCGAGGATCCAAAT 120 Query 396 GAATACCCACAACTATGCAAATTAGCAAATGGATATTTGTTGAAAACAAAAGGG-TATGA 454 |||||||||||||| |||||||||||||||||||||||||||||||| |||||| || || Sbjct 121 GAATACCCACAACTCTGCAAATTAGCAAATGGATATTTGTTGAAAAC-AAAGGGATACGA 179 Query 455 TGAGAATGTGGATGAGTATTTGGAGAATGAAGCTGA-GCGTGATTCTCTCTATGTTCATC 513 |||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||| Sbjct 180 TGAGAATGTGTATGAGTATTTGGCGAATGAAGCTGAGGC-TGATTCTCTCTATGTTCATC 238 Query 514 TCCTTGAAGAATTTGATAGATGCATTCTCACTTATTTTTCTTTCAATTGGACCCAATCTT 573 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 239 TCCTTGAAGAATTTGAGAGATGCATTCTCACTTATTTTGCTTTCAATTGGACCCAATCTT 298 Query 574 CCAACCTCATCTCTCAGGCTTTAAGCGATGAGTCGGATCAGAAAGTTCCAAAACTCAAGG 633 ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 299 CCAGCCTCATCTCTCAGGCTTTAAGCGATGAATCGGATCAGAAAGTACCAAAACTCAAAG 358 Query 634 ATTTCGTGATGGCAGCAACAAGGAAACAGAGGTTTGAGAGAGTAACAAAAGATC-TCAAG 692 |||||||||||||||| |||||||||||| ||||||||||||| |||||||| | | ||| Sbjct 359 ATTTCGTGATGGCAGCGACAAGGAAACAGCGGTTTGAGAGAGTGACAAAAGA-CTTGAAG 417 Query 693 GTGAAAAGGGTAATTTCGACATTAGTAGAAGAGATGAGAGTCATTGGGAGCGGAAGCAGT 752 |||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||| || Sbjct 418 GTGACAAGGGTAATTTCGACATTAGTAAAAGAGATGAGAACCATCGGCAGCGGAAGCGGT 477 Query 753 GAGCCACACTGTACGGAAGTAATGTCTCCGGTGGCTCATAACAAACGAAGTCCCGTCCTT 812 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 478 GAGCCGCATTGTACGGAAGTAATGTCTCCGGTGGCTCACAGCAAACGAAGTCCCGTCCTC 537 Query 813 CTCCTTATGGGCGGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTA 872 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| | Sbjct 538 CTCCTTATGGGCGGAGGAATGGGTGCCGGAAAAAGCACCGTCCTCAAAGATATCTTCCAA 597 Query 873 GAGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGCGTTTAAG 932 ||||| ||||||||||||||| |||| ||||||||||| |||||||| || ||||||||| Sbjct 598 GAGTCATTTTGGTCGGAGGCAGAGGCAGACGCGGTGGTGATAGAGGCGGATGCGTTTAAG 657 Query 933 GAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 992 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GAGACGGATGTTATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 717 Query 993 ACTGCTGAATTGGTTCATCAATCATCAACGGATGCTGCATCGTCCTTACTAGTAACAGCA 1052 |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 718 ACTGCTGAATTGGTCCATCAATCATCAACCGATGCTGCATCGTCCCTACTAGTAACAGCA 777 Query 1053 TTGAACGACGGACGTGATGTGATAATGGATGGAACATTGTCATGGGAGCCATTCGTCGAA 1112 ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 778 TTGAATGATGGACGTGATGTGATAATGGATGGGACATTATCATGGGAGCCATTCGTTGAA 837 Query 1113 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGAAGGCTAC 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 838 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGTAGGCTAC 897 Query 1173 AAGGTGTCCGAAGAGGGGACGATAACCGAAAAATATTGGgaagaagaagaagaagaaacg 1232 |||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| Sbjct 898 AAGGTGTCCGAAGATGGGACAATAACCGAAAAATATT-GG--GAAGAAGAAGAAGAAACG 954 Query 1233 aaagaaaaTGGCAAACAACAAAATC-TGAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1291 |||||||| || |||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 955 AAAGAAAACGGGAAACAA-AAAATCTTCAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1013 Query 1292 TTGTGACGCTTATCTTGCCGTAGCAAGAGGCATACGGAGAGCTCTAATGGTGAAGAGAGC 1351 ||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1014 TTGTGACGCTTATCTCGCTGTAGCAAGAGGCATAAGGAGAGCTCTAATTGTGAAGAGAGC 1073 Query 1352 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTA 1411 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1074 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTCGCTAATGCATTCCCAAAGTA 1133 Query 1412 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1193 Query 1472 GCTTATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATATTGATTG 1531 ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 1194 GCTCATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATTTTGAATG 1253 Query 1532 TCTAAAACGGGTCAGCAGTCTCAACCCGGATGCAGAATCCATTTACGAGCTTTATCCGGA 1591 ||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 1254 TCTAAAACGGGTCAGCAGTCTTAACCCGGATGCAGAATCCATTTTTGAGCTTTACCCGGA 1313 Query 1592 TCCAAGCCAATTAAGCAAACCCGGTTCTGTTTGGAATGATGTTGTGTTAGTTCCATCGAG 1651 ||| ||||||||| ||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 1314 TCCGAGCCAATTATCCAAGCCCGGTTCTGTTTGGAATGATGTCGTTTTAGTCCCATCGAG 1373 Query 1652 GCCCAAGGTCCAGAAGGAACTTAGCGATGCAATCAGGAGAATCGAAAAGGCCCAACCAAA 1711 |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 1374 GCCCAAGGTCCAGAAGGAACTTAGCGATGCCGTCAGGAGAATTGAAAAGGCCCAACCAAA 1433 Query 1712 AAATTGA 1718 ||||||| Sbjct 1434 AAATTGA 1440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72333375255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5