BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04280.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910096 jgi|Araly1|910096|Al_scaffold_0001_350 2163 0.0
> Ahg910096 jgi|Araly1|910096|Al_scaffold_0001_350
Length=1440
Score = 2163 bits (1171), Expect = 0.0
Identities = 1357/1447 (94%), Gaps = 11/1447 (1%)
Strand=Plus/Plus
Query 276 ATGGGGTATAAAGATGTCAAAATCGCCCCTTTGATTGAGAGGAAAGACTCAGGTCGACGA 335
||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGGTATAAAGATGTGAAAATCTCCCCTTTGATTGAGAGGAAAGATTCAGGTCGACGA 60
Query 336 TCAAACCTAGAGAGATTCTCCCACTATGTTGCAAGGCAGCTCGGATTTGAGGATCCAAAT 395
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 TCAAACCTCGAGAGATTCTCCCACTATGTTGCAAGGCAGCTAGGATTCGAGGATCCAAAT 120
Query 396 GAATACCCACAACTATGCAAATTAGCAAATGGATATTTGTTGAAAACAAAAGGG-TATGA 454
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 121 GAATACCCACAACTCTGCAAATTAGCAAATGGATATTTGTTGAAAAC-AAAGGGATACGA 179
Query 455 TGAGAATGTGGATGAGTATTTGGAGAATGAAGCTGA-GCGTGATTCTCTCTATGTTCATC 513
|||||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 180 TGAGAATGTGTATGAGTATTTGGCGAATGAAGCTGAGGC-TGATTCTCTCTATGTTCATC 238
Query 514 TCCTTGAAGAATTTGATAGATGCATTCTCACTTATTTTTCTTTCAATTGGACCCAATCTT 573
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 TCCTTGAAGAATTTGAGAGATGCATTCTCACTTATTTTGCTTTCAATTGGACCCAATCTT 298
Query 574 CCAACCTCATCTCTCAGGCTTTAAGCGATGAGTCGGATCAGAAAGTTCCAAAACTCAAGG 633
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 299 CCAGCCTCATCTCTCAGGCTTTAAGCGATGAATCGGATCAGAAAGTACCAAAACTCAAAG 358
Query 634 ATTTCGTGATGGCAGCAACAAGGAAACAGAGGTTTGAGAGAGTAACAAAAGATC-TCAAG 692
|||||||||||||||| |||||||||||| ||||||||||||| |||||||| | | |||
Sbjct 359 ATTTCGTGATGGCAGCGACAAGGAAACAGCGGTTTGAGAGAGTGACAAAAGA-CTTGAAG 417
Query 693 GTGAAAAGGGTAATTTCGACATTAGTAGAAGAGATGAGAGTCATTGGGAGCGGAAGCAGT 752
|||| |||||||||||||||||||||| ||||||||||| ||| || ||||||||| ||
Sbjct 418 GTGACAAGGGTAATTTCGACATTAGTAAAAGAGATGAGAACCATCGGCAGCGGAAGCGGT 477
Query 753 GAGCCACACTGTACGGAAGTAATGTCTCCGGTGGCTCATAACAAACGAAGTCCCGTCCTT 812
||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 478 GAGCCGCATTGTACGGAAGTAATGTCTCCGGTGGCTCACAGCAAACGAAGTCCCGTCCTC 537
Query 813 CTCCTTATGGGCGGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTA 872
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |
Sbjct 538 CTCCTTATGGGCGGAGGAATGGGTGCCGGAAAAAGCACCGTCCTCAAAGATATCTTCCAA 597
Query 873 GAGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGCGTTTAAG 932
||||| ||||||||||||||| |||| ||||||||||| |||||||| || |||||||||
Sbjct 598 GAGTCATTTTGGTCGGAGGCAGAGGCAGACGCGGTGGTGATAGAGGCGGATGCGTTTAAG 657
Query 933 GAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 992
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGACGGATGTTATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAA 717
Query 993 ACTGCTGAATTGGTTCATCAATCATCAACGGATGCTGCATCGTCCTTACTAGTAACAGCA 1052
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 718 ACTGCTGAATTGGTCCATCAATCATCAACCGATGCTGCATCGTCCCTACTAGTAACAGCA 777
Query 1053 TTGAACGACGGACGTGATGTGATAATGGATGGAACATTGTCATGGGAGCCATTCGTCGAA 1112
||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 778 TTGAATGATGGACGTGATGTGATAATGGATGGGACATTATCATGGGAGCCATTCGTTGAA 837
Query 1113 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGAAGGCTAC 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 CAAATGATCGAAATGGCAAGAAACGTCCACAAACAAAAATATCGAATGGGCGTAGGCTAC 897
Query 1173 AAGGTGTCCGAAGAGGGGACGATAACCGAAAAATATTGGgaagaagaagaagaagaaacg 1232
|||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 898 AAGGTGTCCGAAGATGGGACAATAACCGAAAAATATT-GG--GAAGAAGAAGAAGAAACG 954
Query 1233 aaagaaaaTGGCAAACAACAAAATC-TGAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1291
|||||||| || |||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 955 AAAGAAAACGGGAAACAA-AAAATCTTCAAACCTTACAGAATCGAGCTGGTCGGTGTGGT 1013
Query 1292 TTGTGACGCTTATCTTGCCGTAGCAAGAGGCATACGGAGAGCTCTAATGGTGAAGAGAGC 1351
||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1014 TTGTGACGCTTATCTCGCTGTAGCAAGAGGCATAAGGAGAGCTCTAATTGTGAAGAGAGC 1073
Query 1352 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTTGCTAATGCATTCCCAAAGTA 1411
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 AGTGAGAGTGAAACCACAATTGAATTCACACAAGAGATTCGCTAATGCATTCCCAAAGTA 1133
Query 1412 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGTGAGCTTGTTGATAACGCTAGGCTTTATTGCACCAATGCTGTTGGTGGTCCTCCAAG 1193
Query 1472 GCTTATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATATTGATTG 1531
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1194 GCTCATAGCGTGGAAAGACGGAAATAGTAAGCTTCTGGTGGATCCAGAGGATTTTGAATG 1253
Query 1532 TCTAAAACGGGTCAGCAGTCTCAACCCGGATGCAGAATCCATTTACGAGCTTTATCCGGA 1591
||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 1254 TCTAAAACGGGTCAGCAGTCTTAACCCGGATGCAGAATCCATTTTTGAGCTTTACCCGGA 1313
Query 1592 TCCAAGCCAATTAAGCAAACCCGGTTCTGTTTGGAATGATGTTGTGTTAGTTCCATCGAG 1651
||| ||||||||| ||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1314 TCCGAGCCAATTATCCAAGCCCGGTTCTGTTTGGAATGATGTCGTTTTAGTCCCATCGAG 1373
Query 1652 GCCCAAGGTCCAGAAGGAACTTAGCGATGCAATCAGGAGAATCGAAAAGGCCCAACCAAA 1711
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1374 GCCCAAGGTCCAGAAGGAACTTAGCGATGCCGTCAGGAGAATTGAAAAGGCCCAACCAAA 1433
Query 1712 AAATTGA 1718
|||||||
Sbjct 1434 AAATTGA 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5