BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04290.1

Length=847
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919105 jgi|Araly1|919105|scaffold_100386.1                        758    0.0  


> Ahg919105 jgi|Araly1|919105|scaffold_100386.1
Length=513

 Score =  758 bits (410),  Expect = 0.0
 Identities = 469/497 (94%), Gaps = 5/497 (1%)
 Strand=Plus/Plus

Query  156  aaaaagaaaagggaaagaagaagagaatggatctagaatcggtgaaaaagtatctggaag  215
            ||||||||||  | || ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct  3    AAAAAGAAAA-AG-AA-AAGAAAAGAATGGATCTAGAGTCGGTGAGAAGGTATCTGGAAG  59

Query  216  gaGATGAAGACGAAAAGGCCAAGGAA-CCAATGGTGGCGAAATTACCACACAGATTCCTC  274
            ||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||
Sbjct  60   GAGATGAAGACGAAAAGGCAAAGGAATCCAA-GGTTGCGAAATTACCACACAGATTCCTC  118

Query  275  GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGCCGTATCGTCTGC  334
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  119  GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGTCGTATCGTCTGC  178

Query  335  TCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAAATTCTTACACGGAGGAGCAACG  394
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  179  TCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAATTTCTTACACGGAGGAGCAACG  238

Query  395  GCGACGCTGGTGGATTTGATAGGATCAGCAGTGATCTACACAGCCGGAGCTTCACATTCC  454
            ||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct  239  GCGACTCTGGTGGATCTGATAGGATCAGCAGTGATTTACACAGCCGGAGTTTCACATTCC  298

Query  455  GGAGTTTCAGTGGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATGAAGAGATA  514
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  299  GGAGTTTCTGTCGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATGAAGAGATC  358

Query  515  GAGATAGAATCAAAGGCATTGCGTGTTGGTAAAGCTGTAGCAGTAGTGAGTGTGGAGCTG  574
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct  359  GAGATAGAATCAAAGGCATTGCGTGTTGGAAAAGCTGTAGCAGTAGTGAGTGTTGAGCTC  418

Query  575  AGGAAGAAGACGACTGGTAAGATTATTGCTCAAGGTCGTCATACCAAGTACTTTGCTCCT  634
            |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct  419  AGGAAGAAGAAGACTGCTAAGATCATTGCTCAAGGTCGTCATACTAAGTACTTTGCTCCT  478

Query  635  CGTTCCAACCTTTGATC  651
            |||||||||||||||||
Sbjct  479  CGTTCCAACCTTTGATC  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31337037774


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5