BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04300.3
Length=3610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3 4974 0.0
Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2 1219 0.0
Ahg916864 jgi|Araly1|916864|Al_scaffold_0008_1615 1184 0.0
> Ahg470409 jgi|Araly1|470409|fgenesh2_kg.1__363__AT1G04300.3
Length=3532
Score = 4974 bits (2693), Expect = 0.0
Identities = 3322/3612 (92%), Gaps = 98/3612 (3%)
Strand=Plus/Plus
Query 17 ctctctttctctctatttatctctctttcttttcctccgtcgtcttttttggtttgttct 76
|||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTATTTATCTCCCTTTCTTGTCCTCCGTCGTCTTTTTTGGTTTGTTCT 60
Query 77 ctctctGTAGAATCTCATAGGAGCTGCCATTAGCCCATTCAACGAATTAGCTTCTCTTTG 136
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTCTCTGTAGAATCTCTTAAGAGCTGCCATTAACCCATTCAACGAATTAGCTTCTCTTTG 120
Query 137 CTCTTTCTTCCACCATCTCAGTTGAAGGAGAGAGAGAGCTTTGACGAAACAAT-TTCATA 195
||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||
Sbjct 121 CTCTTTCTTCCACCATCTCAGTTGAAGAAGAGAGAGAGCTTTGACG-AA-AATATTCATA 178
Query 196 CTGGGGAATGGCAGAGGCTGTTGATGAAGATTCTGGGGTTGGACGATCTCTAGAGGAGAG 255
|||||||||||||||| | | | | | ||||||||||| ||||||||||
Sbjct 179 CTGGGGAATGGCAGAGAC------T---G--T-T---GTTGGACGATCAGTAGAGGAGAG 223
Query 256 TTCAAATGGACAACACAGTCAAGCAGGAGAAGCACTCTCAGAGTGGCGCTCTTCTGGTCA 315
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 224 TTCTAATGGACAACACAGTCAAGCAGGAGAAGCACTCTCTGAGTGGCGGTCTTCTGGTCA 283
Query 316 AGTGGAGAACGGGACTCCATCCACATCCCCCTCTTACTGGGATATCGATGACGATGATGA 375
||| ||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||
Sbjct 284 AGTAGAGAACGGGACTCCATCTACGTCGCCCTCCTACTGGGATATCGATGAGGATGATGA 343
Query 376 TTATGGCCTGAAACCCTCTGAGTTATATGGACAGTATACTTGGAAGATTCCGAAATTTTC 435
||||||||| |||||||||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 344 TTATGGCCTTAAACCCTCTGAGTTATTTGGAAAATATACTTGGAAGATTCCAAAATTTTC 403
Query 436 AGAAATCACTAAAAGGGAGCATCGTAGCAATGTTTTTGAAGCTGGCGGTTACAAATGGTA 495
|||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 404 AGAAATCAATAAAAGGGAGCATCGTAGCGATAATTTTGAAGCTGGCGGCTACAAATGGTA 463
Query 496 TATTTTAATTTATCCACAAGGATGTGATGTTTGTAATCATCTCTCCTTGTTTCTCTGTGT 555
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 464 TATTTTAATTTATCCACAAGGATGTGATGTTTTTAATCATCTCTCCTTGTTTCTCTGTGT 523
Query 556 TGCAAATTATGATAAACTTCTTCCAGGTTCTTTTGCTATCTTGGAGGCAGGCTGGAGTCA 615
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGCAAACTATGATAAACTTCTTCCAGGTTCTTTTGCTATCTTGGAGGCAGGCTGGAGTCA 583
Query 616 GTTCGCTCAGTTTACTATATCTGTGTTGAGTCAAGATCTCAAGAAATCAAAGTTTTCAGA 675
|||||||||||||||||||||||||||| | ||||| | |||||| | |||||||||||
Sbjct 584 TTTCGCTCAGTTTACTATATCTGTGTTGAATAAAGATATAAAGAAAACGAAGTTTTCAGA 643
Query 676 TACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAAAAGTTTATGGAGTT 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAAAAGTTTATGGAGTT 703
Query 736 GCCTAAGTTAAAAGACGGGTTCATAGATGAGTCTGGCTGTCTTACAATTGAGGCTAAAGT 795
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 704 ACCTAAGTTAAAGGACGGGTTCATAGATGATTCTGGCTGTCTTACAATTGAGGCTCAAGT 763
Query 796 TCAGGTGATCAGAGAGAGGGTAGACCGACCTTTTCGCTGCCTTGATTGCGGTTATAGGAG 855
||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 764 TCAGGTGATCAGAGAGAGGGTGGACAGACCTTTTCGCTGCCTTGATTGTAGTTATAGGAG 823
Query 856 AGAACTTGTTAGGGTGTATTT-CCAAAATGTGGAGCAAATTTGCCGACGTTTTGTTGAAG 914
||||||||||||||||||||| || ||||||||| |||| |||||| |||||||||||||
Sbjct 824 AGAACTTGTTAGGGTGTATTTGCC-AAATGTGGATCAAAATTGCCGGCGTTTTGTTGAAG 882
Query 915 AGAAAAGAAGCAAGCTAGGGAGGTTGATAGAGGACAAGGCAAGATGGACAAGCTTCGGTG 974
||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 883 AGAGAAGAAGCAAGCTCGGGAGGTTGATAGAGGACAAGGCAAGATGGACTAGCTTCGGTG 942
Query 975 TTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCGGATGTGTAGAGAGAAAGTGGACG 1034
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 943 TTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCGGATGTCTAGAGAGAAAATGGACG 1002
Query 1035 TAATCCTAAAAGGAGTTGTAAAACACTTTTTCGTAGAGAAAGAAGTTTCATCCACTTTGG 1094
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1003 TAATCCTAAAAGGAGTTGTAAAACACTTTTTCGTAGAAAAAGAAGTTACATCCACTTTGG 1062
Query 1095 TGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTAGAAGGCCAAACTAAGAACATGAAAG 1154
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1063 TGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTTGAAGGCCAAACTAAGAACACGAAAG 1122
Query 1155 CTAGGTCGAGACTTTTAGATGCCAAGCAATTGCCAGCACCGATTGTTAGCGTGGACAAAG 1214
|||| | ||||| |||||||||||| |||||||||| || ||||| |||||||| ||||
Sbjct 1123 ATAGGCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCAATTGTAAGCGTGGAAAAAG 1182
Query 1215 ATATGTTCGTATTAGTTGATGATGTGCTGTTACTCCTAGAGAGAGCTGCTCTTGAGCCAT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ATATGTTCGTATTAGTTGATGATGTGCTGTTACTCCTAGAGAGAGCTGCTCTTGAGCCAT 1242
Query 1275 TGCCTCCAAAAGATGAAAAAGGTCGCCAGAACCGTACAAAGGATGGCAATGATGGAGAAG 1334
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1243 TGCCTCCAAAAGAGGAGAAAGGTCCCCAGAACCGTACAAAGGATGGCAATGATGGAGAAG 1302
Query 1335 AGGTCAACAAGGAAGCCGATGAGCGTGATGAGAGACGTTTAACTGAATTGGGTAGACGAA 1394
||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1303 AGGTCAACAAGGAAGCCTACGAGCGTGATGAGAGACGTTTAACTGAGTTGGGTAGACGAA 1362
Query 1395 CTGTGGAGATATTTATTCTTTCCCATATCTTCAGCACTAAAATCGAAGTTGCACATCAAG 1454
||||||| |||||| ||||| ||||||||||||||| ||||||||| |||||| ||||||
Sbjct 1363 CTGTGGAAATATTTGTTCTTGCCCATATCTTCAGCAGTAAAATCGAGGTTGCATATCAAG 1422
Query 1455 AAGCTATCGCGCTAAAAAGGCAGGAAGAACTTATTCGTGAGGAAGAGGAAGCGTGGTTGG 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 AAGCTATCGCGCTAAAAAGGCAGGAAGAACTTATTCGTGAGGAAGAGGAAGCGTGGTTGG 1482
Query 1515 CAGAAACCGAACAGAGGGCCAAAAGAGGAGCAGCCGAGCGAGAGAAGAAATCTaagaaga 1574
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1483 CAGAAACCGAACAGAGGGCCAAAAAAGGAGCAGCCGAGAGAGAGAAGAAATCTAAGAAGA 1542
Query 1575 aacaggcgaaacagaaacggaacaaaaataaagggaaggacaaaaggaaggaagaaaagg 1634
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1543 AACAGGCGAAACAGAAACGGAACAAAAATAAAGGGAAGGACAAAAGAAAGGAAGAAAAGG 1602
Query 1635 TGAGTTTTGCAACACATGCAAAGGATCTCGAGGaaaaccaaaaccaaaaccaaaacGATG 1694
|||| |||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1603 TGAGCTTTGCATCACATGAAAAGGATCTCGAGGAAAACCAAAAC------------GATG 1650
Query 1695 AGGAAGAAAAGGATTCTGTCACGGAGAAAGCACAATCTTCAGCTGAAAAGCCTGATACTC 1754
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1651 AGGAAGAAAAGGATTCTGTCACGGAGAAAGCACACTCTTCAGCTGAAAAGCCTGATACTC 1710
Query 1755 TTGGAGATGTGTCCGACATATCTGATTCTGTGGATGGTTCGGCTGACATTCTTCAGCCTG 1814
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1711 TTGGAGATGTGTCCGACATATCTGATTCTGTGGATGGTTCGGCTGACATTGTTCAGCCTG 1770
Query 1815 ATTTAGAAGATAGGGATAGTAGTTCTGTTCTTTGGGATACTGATGCCTTGGAAATTCATC 1874
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1771 ATTTAGAAGATAGGGATAGTAGTTCTGTTCATTGGGATACTGACGCCTTGGAAATTCATG 1830
Query 1875 CTCCATCATCAGAAGGGAGCAGTAGAGGAAGAGGCATTTCGATATCTACACCCAATGGAA 1934
|| ||||||||| ||||||||||||||||||||||| | | | | | |||||||
Sbjct 1831 CTGCATCATCAGGAGGGAGCAGTAGAGGAAGAGGCA---C-A---C--C-C--AATGGAA 1878
Query 1935 TTACAGAAGGAAAGAGTCATTCCACTATGGATGATAGTTCTTCAACTTGTTCTAATGATT 1994
|| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TTGCAGAAAGAAAGAGTCAGTCCACTATGGATGATAGTTCTTCAACTTGTTCTAATGATT 1938
Query 1995 CTATCCGATCGGGGGTAACCAATGGGTCCTACCAAGGGAATTCCTTGAATTTCCGAAACC 2054
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1939 CTATCCGGTCGGGGGTAACCAATGGGTCCTACCAAGGGAATGCCTTGAATTTCCGAAACC 1998
Query 2055 AGAAGTCGCCGAACAAAGGAAAGAACCAACAAGTGAAAGCAATGA-CTGATGCCCACAGT 2113
|||||||||||||| ||||||||| |||||||| |||||||| | ||||||||||||||
Sbjct 1999 GGAAGTCGCCGAACAGAGGAAAGAATCAACAAGTAAAAGCAAT-ATCTGATGCCCACAGT 2057
Query 2114 TTAGCGAGTGAAACAGATGATCAACCCTCAACACTTGGAACAGACCCCAAGGGTCAGAAT 2173
|||| ||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||
Sbjct 2058 TTAGGGAGTGAAACAGATGATCAACCTTCAACACTTGGGACAGACCCAAAGAGTCAGAAT 2117
Query 2174 TATTCTTCCGAGGCAAGCAACGTTGGTGAATCTGATTGGGTTGTTGTCTCCCACATCCAG 2233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2118 TATTCTTCCGAGGCAAGCAACGTTGGTGAATCTGATTGGGTTGTTGTCTCCCACGTCCAG 2177
Query 2234 GAGCCAGAGGGTTCTCGAAATCGTATTCCTGTTGGGAGGGAACGCAAAACGGTTCAATCC 2293
||| ||||||||||||||||||||||||||||||||| ||||| | | || |||||||
Sbjct 2178 GAGGCAGAGGGTTCTCGAAATCGTATTCCTGTTGGGAAGGAACTCGACGTGGCTCAATCC 2237
Query 2294 ATTGTGAACTCGGTCGACATGGATCGACCTAAAGAGAAAAGCACTGCTGTACTTTCTTCT 2353
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2238 ATTGTGAACTCGATCGACATGGATCGACCTAAAGAGAAAAGCGCTGCTGTACTTTCTTCT 2297
Query 2354 CCCAGAAATGTTGCCAAGAATCCTTCACCATTAACTCAGACA-AAACCGGAGAAAAAGAG 2412
||||||| ||||||||||||||| |||||||||||||||| | ||||| |||||||||||
Sbjct 2298 CCCAGAAGTGTTGCCAAGAATCCATCACCATTAACTCAGA-AGAAACCAGAGAAAAAGAG 2356
Query 2413 CATTTCAACCGCAGACGGTATTCCAAACAGGAAAGTACTGGCAACTGGACCACCTTCATC 2472
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2357 CATTTCAACCGCAGACGCTATTCCAAGCAGGAAAGTACTGGCAACTGGACCACCTTCATC 2416
Query 2473 AAGCCAAGTAGTGCTTCCTTCAGATATTCAGTCGCAAACTGTTGGTCTCAGAGCTGATAT 2532
||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 2417 AAGTCAAGTAGTGCTTTCTTCAGATGTTCAGTCGCAAACTGCTGGTCTCAGAGCTGTTAT 2476
Query 2533 GCAAAAACTCTCTGCTCCAAAACAACCACCAGCAACAACTATATCAAGGCCTTCCAGTGC 2592
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2477 GCAAAAAATATCTGCTCCAAAACAACCAGCAGCAACAACTATATCAAGGCCTTCCAGTGC 2536
Query 2593 TCCAATAATCCCTGCGATGCGACCCTCCCCAATCACCGTCTCTTCCTCAGTTCAAACAAC 2652
|||||||||||||||||||| |||| |||||||| ||||||| ||||| |||||| ||||
Sbjct 2537 TCCAATAATCCCTGCGATGCAACCCGCCCCAATCGCCGTCTCATCCTCGGTTCAAGCAAC 2596
Query 2653 AACATCCCTTCCTCGTTCGGTTAGCTCAGCTGGTCGTCTAGGTCCAGATCCATCCCTACA 2712
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2597 AACATCCCTTCCTCGTTCGGTTAGCTCAGCTGGTCGTCTAGGTCCTGATCCATCCCTACA 2656
Query 2713 CAACCAACAAACATACACTCCTCAATCCTATAAAAACGCTATAGTCGGTAACTCTCTTGG 2772
|||||||||||||||||||||||| ||||||||| | || ||||| |||||||||||| |
Sbjct 2657 CAACCAACAAACATACACTCCTCATTCCTATAAACATGCCATAGTTGGTAACTCTCTTAG 2716
Query 2773 TTCATCATCATCTAGTTTCAACCACCACCCAAGCTCTCATGGAGTTGTCCCGACCACATT 2832
||||||||| | |||||||||||||||| || |||||| ||||||||||| |||||| |
Sbjct 2717 TTCATCATC-T--AGTTTCAACCACCACCAAAACTCTCACGGAGTTGTCCCAACCACACT 2773
Query 2833 GCCATCATCATCTTACTCGCAAGCACCAACATCATCTTATCAGTCAAGCTTCCCTTACAG 2892
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 2774 GCCATCATCATCTTACTCGCAAACACCGGCATCATCTTATCAGTCAAGCTTCCCTTACAG 2833
Query 2893 TCAAGATGGGCTCTTGTGGACAGGAAGAAGTCCCAGTTCTGTAAACATGGGCATGTACAA 2952
||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||
Sbjct 2834 TCAAGATGGGCTCTTGTGGACAGGAAGAAGTTCCAATTCTGTAAACATGGGCAGGAACAA 2893
Query 2953 CAACACTTACTCACCCGCCGTTACTAGCAACAGATCGCTGAACCACATGGACGTTCAGAT 3012
||| |||||||||| |||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 2894 TAACCCTTACTCACCGGCCGTTACTAGCAAGAGATCGCTCAACCACATGGACATTCAGAT 2953
Query 3013 AGCGCAGCAACAAGCACAAAGCATGATGACGGATGAGTTCCCTCACCTAGACATCATCAA 3072
||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 2954 CGCGCAGCAACAAGCACAAAGCTTGGTGACGGATGAGTTCCCTCACCTCGACATCATCAA 3013
Query 3073 TGATCTGCTGGAAGACGAACAGTGCAGCAACATGGTGTATAA-CGGAAGCATATTCAATC 3131
||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 3014 TGATCTGCTGGAAGATGAACAGTGCAGCAACATGGTGT-TAAACGGAAGCATATTCAATC 3072
Query 3132 CACAACCGCAAGTGTTCAACGGGCAGTACTCATCATACCA---TG--GT-G---AGTTAT 3182
|||||| |||||||||||||||||||||||||||||||| || || | ||||||
Sbjct 3073 AACAACCCCAAGTGTTCAACGGGCAGTACTCATCATACCAGGGTGATGTAGGTGAGTTAT 3132
Query 3183 TGTCTGGTGGCAGGACCAGGAGTTTCGGAGAGGAAGGATTGCATTACATGGCACGTGGAC 3242
|||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 3133 TGTCTGGTGGCAGGTCCAGGAGTTTTGGAGAAGAAGGATTCCATTACATGGCACGTGGAC 3192
Query 3243 CATATGGTACAGACGGAATGATGCCGAGACAGTGGCAAATGACGAACATGGACTTGTCGT 3302
|||||||| |||| ||| ||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 3193 CATATGGTGCAGATGGATTGATGCCGACACAGTGGCAAATGGCGAACATGGACTTGTCTT 3252
Query 3303 TGCCAGCAATGAGGAGCAAT-GGAATGGAAGATGGAACATCATCAGCAGCTAATTACCAT 3361
||| ||||||||||| |||| ||| ||||||||| ||||||||||||||| |||||||||
Sbjct 3253 TGCTAGCAATGAGGAACAATAGGA-TGGAAGATGCAACATCATCAGCAGCAAATTACCAT 3311
Query 3362 CACAGTTACTTTGGTTTGGACGCTTCGAATCCAAGTTTTACGTCTGGTATTAATGGCTAC 3421
|||| ||||||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 3312 CACACATACTTTGGTTTGGACTCTTCGAATCCAAGTTTTGCGTCTGGTATCAATGGCTAC 3371
Query 3422 ACCGAGTTCAGGCCATCGAATGGTCATTGATCAGCAAATGGAGAGAGGGGATTTGTAATG 3481
|||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 3372 ACCGAGTTCAGGCCATCGAATGGTCATTGA--AG-----GG-GA-------TTTGTAATG 3416
Query 3482 tttttattttttttaaaaaggaaaaaaaaTCATGAATAT-ACAATTTGTGTAAAGAGAG- 3539
|||||||| ||||| ||| |||||| || |||||||||||||||||||
Sbjct 3417 TTTTTATT------AAAAA--AAAG-----CATGAA-ATTACAATTTGTGTAAAGAGAGA 3462
Query 3540 -TTGTCTTCTTGTCATCCTCTACGTTTCAAATGGtttttttttttttAAATATAGTATAA 3598
||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 3463 GTTGTCTTCTTGTCTTCCTCTACGTTTCAAATGGTTTTTTTTTTAAAAAA-ATA-TATAA 3520
Query 3599 GATAGTTTTCGC 3610
||||||||||||
Sbjct 3521 GATAGTTTTCGC 3532
> Ahg494645 jgi|Araly1|494645|fgenesh2_kg.8__461__AT5G43560.2
Length=3428
Score = 1219 bits (660), Expect = 0.0
Identities = 1191/1441 (83%), Gaps = 62/1441 (4%)
Strand=Plus/Plus
Query 219 ATGAAGATTCTGGGGTTGGACGATC-TCTAGAGGA-GAG--TTCAAATGGAC-AACACAG 273
||||||||| ||| | ||| |||| || || ||| ||| ||||||||||| || | ||
Sbjct 164 ATGAAGATTGTGGAGCAGGAAGATCATC-AGTGGATGAGAATTCAAATGGACAAAGA-AG 221
Query 274 TCAAGCAGGAGAAGCACTCTCAGAGTGGCGCTCTTCTGGTCAAGTGGAGAACGGGACTCC 333
|||| ||| ||||| ||| | || ||||| || |||| |||||||||||| || |||||
Sbjct 222 TCAATCAGAAGAAGTACTAGCGGAATGGCGGTCGTCTGATCAAGTGGAGAATGGAACTCC 281
Query 334 ATCCACATC-CCCCTCTTACTGGGATATCGATGACGAT---GATGATTATGGCCT-GAAA 388
|| ||||| || | | || ||||| |||||||| ||| || |||| ||| | |||
Sbjct 282 TTCAACATCGCCAC-CGTATTGGGACATCGATGATGATGACGACGATTTTGG-ATCAAAA 339
Query 389 CCCTCTGAGTTATAT-GGACAGTATACTTGGAAGATTCCGAAATTTTCAGAAA-TCACTA 446
|| ||||| ||| | ||| | ||||||||| |||| |||||||||||||| | || |
Sbjct 340 CCATCTGAACTATTTGGGA-AAAATACTTGGACGATTGAGAAATTTTCAGAAATTAAC-A 397
Query 447 AAAGGGAGCAT-CGTAGCAATGTTTTTGAAGCTGGCGGTTACAAATGGTATATTTTAATT 505
|| |||||| | ||| || |||||||||||| ||| || |||||||||||||| ||||||
Sbjct 398 AACGGGAGC-TCCGTGGCGATGTTTTTGAAGTTGGGGGCTACAAATGGTATATATTAATT 456
Query 506 TATCCACAAGGATGTGATGTTTGTAATCATCTCTCCTTGTTTCTCTGTGTTGCAAATTAT 565
||||||||||| ||||||||||| || |||||||| |||||||||||||||||| | ||
Sbjct 457 TATCCACAAGGGTGTGATGTTTGCAACCATCTCTCTTTGTTTCTCTGTGTTGCACACCAT 516
Query 566 GATAAACTTCTTCCAGGTTCTTTTGCTATCTTGGAGGCAGGCTGGAGTCAGTTCGCTCAG 625
|| ||| | | || || || ||||||||||||| || ||||||
Sbjct 517 GA-AAA--------A----C--TT-CT-TC-------CAGGCTGGAGTCATTTTGCTCAG 552
Query 626 TTTACTATATCTGTGTTGAGTCAAGATCTC-AAGAAATCAAAGTTTTCAGATACACTGCA 684
||||||||| |||||| || | |||||| | |||||||||||| ||||||||| | ||
Sbjct 553 TTTACTATAGCTGTGTCGAATAAAGATC-CAAAGAAATCAAAGCATTCAGATACGTTACA 611
Query 685 CCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAAAAGTTTATGGAGTTGCCTAAGTT 744
|||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||| ||
Sbjct 612 CCGGTTTTGGAAAAAAGAACATGATTGGGGATGGAAAAAGTTTATTGAGTCACCTAAATT 671
Query 745 AAAAGACGGGTTCATAGATGAGTCTGGCTGTCTTACAATTGAGGCTAAAGTTCAGGTGAT 804
||| || |||||||||||||| | || |||||||||||| ||||| |||| ||||||||
Sbjct 672 AAAGGAAGGGTTCATAGATGATTATGATTGTCTTACAATTAAGGCTCAAGTCCAGGTGAT 731
Query 805 CAGAGAGAGGGTAGACCGACCTTTTCGCTGCCTTGATT-GCGGTTATA-GGAGAGAACTT 862
|||||||||||| ||||||||||||||||||||| ||| | |||| |||| ||||||
Sbjct 732 CAGAGAGAGGGTGGACCGACCTTTTCGCTGCCTTCATTATAAG-TATAGGGAG-GAACTT 789
Query 863 GTTAGGGTGTATTTCCA-AAATGTGGAGCAAATTTGCCGACGTTTTGTTGAAGAGAAAAG 921
||| |||||||||| | |||||| |||||||||||| | || ||||| |||||||||||
Sbjct 790 GTTCGGGTGTATTT-GACAAATGTAGAGCAAATTTGCTGGCGGTTTGTGGAAGAGAAAAG 848
Query 922 AAGCAAGCTAGGGAGGTTGATAGAGGACAAGGCAAGATGGACAAGCTTCGGTGTTTTCTG 981
||||||||| || |||||||||||||||||||||| ||||| ||||||| ||| ||||||
Sbjct 849 AAGCAAGCTTGGTAGGTTGATAGAGGACAAGGCAAAATGGAAAAGCTTCTGTGCTTTCTG 908
Query 982 GTTAGGGATGGACCAAAACTCTAGGCGTCGGATGTGTAGAGAGAAAGTGGACGTAATCCT 1041
| | ||| |||||||||| || |||||||| |||| |||||||| |||| || || ||
Sbjct 909 GATGGGGTTGGACCAAAATTCAAGGCGTCGAATGTCCCGAGAGAAAATGGATGTGATTCT 968
Query 1042 AAAAGGAGTTGTAAAACACTTTTTCGTAGAGAAAGAAGTTTCATCCACTTTGGTGATGGA 1101
|||| |||||||||||| || ||| | ||||| |||||| |||| ||||||||||||||
Sbjct 969 AAAAATAGTTGTAAAACAATTCTTCATTGAGAAGGAAGTTACATCTACTTTGGTGATGGA 1028
Query 1102 TTCCTTGTATAGTGGGTTGAAGGCTCTAGAAGGCCAAACTAAGAACATGAAAGCTAGGTC 1161
||||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||| |
Sbjct 1029 TTCCTTGTATAGTGGGTTGAAGGCTCTTGAAGGCCAAATTAAGAACAAGAAAACTAGGCC 1088
Query 1162 GAGACTTTTAGATGC-CAAGCAATTGCCAGCACCGATTGTTAGCGTGGACAAAGATATGT 1220
|||||| | ||| | ||| |||||||||| || |||||||| ||||||||||||| ||
Sbjct 1089 GAGACTAATGGATACTGAAG-AATTGCCAGCTCCAATTGTTAGTGTGGACAAAGATACGT 1147
Query 1221 TCGTATTAGTTGATGATGTGCTGTTACTCCTAGAGAGAGCTGCTCTTGAGCCATTGCCTC 1280
| | |||||||||||||||| | |||||| ||||||| |||||| | ||||||||||||
Sbjct 1148 TTGCATTAGTTGATGATGTGTTATTACTCTTAGAGAGGGCTGCTGTGGAGCCATTGCCTA 1207
Query 1281 CAAAAGATGAAAAAGGTCGCCAGAACCGTACAAAGGATGGCAATGATGGAGAAGAGGTCA 1340
||||||| |||||| ||| ||| ||||| || |||||||| |||| |||||| || ||
Sbjct 1208 CAAAAGAGGAAAAAAGTCCCCAAAACCGCACGAAGGATGGGAATGCTGGAGAGGAATTC- 1266
Query 1341 ACAAG-GAAGCCGA-TGAGCGTGATGAGAGACGTTTAACTGAATTGGGTAGACGAACTGT 1398
| || |||||| | ||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1267 AGTAGAGAAGCC-ATTGAGCGTGATGAGAGGCGTTTAACTGAGTTGGGTAGACGGACTGT 1325
Query 1399 GGAGATATTTATTCTTTCCCATATCTTCAGC-ACTAAAATCGAAGTTGCACATCAAGAAG 1457
|||||||||| ||||| | |||||||||||| || ||||| ||||||||| | |||||||
Sbjct 1326 GGAGATATTTGTTCTTGCACATATCTTCAGCAAC-AAAATTGAAGTTGCATACCAAGAAG 1384
Query 1458 CTATCGCGCT-AAAAAGGCAGGAAGAACTTATTCGTGAGGAAGAGGAAGCGTGGTTGGCA 1516
|||| || | ||| |||| ||||||||||||||||| || |||||||||||| |||||
Sbjct 1385 CTATTGC-ATGGAAACGGCAAGAAGAACTTATTCGTGAAGAGGAGGAAGCGTGGCTGGCA 1443
Query 1517 GAAACCGAACAGAGGGCCAAAAGAGGAGCAGCCGAGCGAGAGAAGAAATCTaagaagaaa 1576
|||| |||||||| ||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1444 GAAAGCGAACAGAAGGCCAAAAGAGGACCATCCGAAAAAGAGAAGAAATCTAAGAAGAAA 1503
Query 1577 caggcgaaacagaaacggaacaaaaataaagggaaggacaaaaggaaggaagaaaaggTG 1636
||||||||||||||| ||||||||| ||||| ||||| |||| ||| ||||| ||||||
Sbjct 1504 CAGGCGAAACAGAAAAAGAACAAAAACAAAGGAAAGGAAAAAAAGAAAGAAGAGAAGGTG 1563
Query 1637 A 1637
|
Sbjct 1564 A 1564
> Ahg916864 jgi|Araly1|916864|Al_scaffold_0008_1615
Length=1197
Score = 1184 bits (641), Expect = 0.0
Identities = 992/1154 (86%), Gaps = 53/1154 (5%)
Strand=Plus/Plus
Query 368 GATGATGATTATGGCCTGAAACCCTCTGAGTTATAT-GGACAGTATACTTGGAAGATTCC 426
|||||| || ||||||| ||||| ||||| |||| | ||| | |||| |||||||||
Sbjct 22 GATGATTATGATGGCCTTAAACCTTCTGAATTATTTGGGA-AACATACATGGAAGATTGA 80
Query 427 GAAATTTTCAGAAATC-ACTAAAAGGGAGCAT-CGTAGCAA-TGTTTTTGAAGCTGGCGG 483
|||||||||| || || | ||||||||| | |||||||| || ||||||||||||||
Sbjct 81 GAAATTTTCACAAGTCGGC-AAAAGGGAG-TTCCGTAGCAATTG-GTTTGAAGCTGGCGG 137
Query 484 TTACAAATGGTATATTTTAATTTATCCACAAGGATGTGATGTTTGTAATCATCTCTCCTT 543
||||| ||||||||||||||||||||| |||||||||||||| | ||| ||||||| ||
Sbjct 138 ATACAATTGGTATATTTTAATTTATCCAGAAGGATGTGATGTTAGCAATTATCTCTCATT 197
Query 544 GTTTCTCTGTGTTGCAAATTATGATAAACTTCTTCCAGGTTCTTTTGCTATCTTGGAGGC 603
||||||||||||||||| |||||| || | | || || || |
Sbjct 198 ATTTCTCTGTGTTGCAAACTATGAT-AA--------A----C--TT-CT-TC-------C 233
Query 604 AGGCTGGAGTCAGTTCGCTCAGTTTACTATATCTGTGTTG-AGTCAAGATCTC-AAGAAA 661
||||||||||||||||||||||||||||||||||||| || | | |||||| | |||||
Sbjct 234 AGGCTGGAGTCAGTTCGCTCAGTTTACTATATCTGTGGTGCA-TAAAGATC-CAAAGAAG 291
Query 662 TCAAAGTTTTCAGATACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAA 721
|| |||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 292 TCTAAGTCTGCAGATACGTTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAA 351
Query 722 AAGTTTATGGAGTTGCCTAAGTTAAAAGACGGGTTCATAGATGAGTCTGGCTGTCTTACA 781
|||||||||||||| || |||||| | || |||||||||||||| | ||||| |||||||
Sbjct 352 AAGTTTATGGAGTTACCCAAGTTACATGATGGGTTCATAGATGATTTTGGCTCTCTTACA 411
Query 782 ATTGAGGCTAAAGTTCAGGTGATCAGAGAGAGGGTAGACCGACCTTTTCGCTGCCTTGAT 841
||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 412 ATTGAGGCTCATGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTTTCGCTGCCTTAAT 471
Query 842 TGCGGTTATAGGAGAGAACTTGTTAGGGTGTATTT-CCAAAATGTGGAGCAAATTTGCCG 900
| | ||| | || ||| ||||||||||||||||| || |||||| |||||||||| |||
Sbjct 472 TATGATTACAAGAAAGAGCTTGTTAGGGTGTATTTGCC-AAATGTAGAGCAAATTTTCCG 530
Query 901 ACGTTTTGTTGAAGAGAAAAGAAGCAAGCTAGGGAGGTTGATAGAGGACAAGG-CAAGAT 959
||||||||| || |||| |||||||||||| | || ||||| ||||||||||| ||| ||
Sbjct 531 ACGTTTTGTGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGAAAGAGGACAAGGCCAA-AT 589
Query 960 GGACAAGCTTCGGTGTTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCGGATGTGTA 1019
||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 590 GGACAGGCTTTGGTGATTTCTGGTTAGGGATGGACCAAAACTCTAGGCAACGGATGTCTA 649
Query 1020 GAGAGAAAGTGGACGTAATCCTAAAAGGAGTTGTAAAACACTTTTTCGTAGAGAAA-GAA 1078
|||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 650 GAGAGAAAATGGACGAAATCCTAAAAGGAGTTGTAAAACACTTTTTCAAAGA-AAAGGAA 708
Query 1079 GTTTCATC-CACTTTGGTGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTAGAAGGCCA 1137
|||||||| | || |||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 709 GTTTCATCTC-CTGTGGTGATGGATTTCTTGTATAGTGGGTTGAAGGATCTTGAAGGCCA 767
Query 1138 AACTAAGAACATGAAAGCTAGGTCGAGACTTTTAGATGCCAAGCAATTGCCAGCACCGAT 1197
||||||||||| ||||||||| | ||||| |||||||||||| |||||||||| ||| |
Sbjct 768 AACTAAGAACAAGAAAGCTAGCCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCG-T 826
Query 1198 T-GTTAGCGTGGACAAAGATATGTTCGTATTAG-T--TGATGATGTGCTGTTACTCCTAG 1253
| |||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 827 TGGTTAACGTGGACAAAGATATGTTCCTATTAGTTGATGATGATGTGCTGTTACTCCTAC 886
Query 1254 AGAGAGCTGCTCTTGAGCCATTGCCTCCAAAAGATGAAAAAGGTCGC-CAGAACCGTACA 1312
||||||||||||| ||||||||||||||||||||||| || |||| | || || ||||
Sbjct 887 AGAGAGCTGCTCTAGAGCCATTGCCTCCAAAAGATGAGAATGGTC-CTCAAAATCGTATT 945
Query 1313 AAGGATGGCAATGATGGAGAAGAGGTCAACAAGGAAGCCGATGAGCGTGATGAGAGACGT 1372
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 946 AAGGATGGCAATGATGGAGAAGAGGTCAACATGGAAGCTTATGAGCGTGATGAGATACGT 1005
Query 1373 TTAACTGAATTGGGTAGACGAACTGTGGAGATATTTATTCTTTCCCATATCTTCAGCA-C 1431
|||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||| |
Sbjct 1006 TTAACTGAGTTGGGTAAACGAACTGTGGAGATATTTGTTCTTGACCATATCTTTAGCAGC 1065
Query 1432 TAAAATCGAAGTTGCACATCAAGAAGCTATCGCGCTAAAAAGGCAGGAAGAACTTATTCG 1491
||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1066 -AAAATTGAGGTTGCATATCAAGAAGCTATTGTGCTAAAAAGGCAGGAAGAACTTATTCG 1124
Query 1492 TGAGGAAGAGGAAG 1505
||||||||||||||
Sbjct 1125 TGAGGAAGAGGAAG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136360284059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5