BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04310.1
Length=2470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910099 jgi|Araly1|910099|Al_scaffold_0001_353 2988 0.0
> Ahg910099 jgi|Araly1|910099|Al_scaffold_0001_353
Length=1959
Score = 2988 bits (1618), Expect = 0.0
Identities = 1862/1978 (94%), Gaps = 24/1978 (1%)
Strand=Plus/Plus
Query 181 ATGTTAAAGACATTGTTAGTCCAATGGCTTGtcttcttcttcttcttcttAATCGGTTCC 240
||||||||||||||||||||||||||||| | | |||||||||||| ||||||| |||
Sbjct 1 ATGTTAAAGACATTGTTAGTCCAATGGCTAG---TGTTCTTCTTCTTCGTAATCGGCTCC 57
Query 241 GTCGTCACCGCCGCAGAAGACGACGGTAGCTTGTCGTTATGCAACTGCGACGACGAAGAC 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTCGCCACCGCCGCAGAAGACGACGGTAGCTTGTCGTTATGCAACTGCGACGACGAAGAC 117
Query 301 AGTCTCTTTAGCTACGAGACAATCCTCAACTCGCAAAAAGTCGGCGACTTTCTTATCGCA 360
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 118 AGTCTCTTTAGCTATGAGACAATCCTCGACTCGCAAAAAGTCGGCGACTTTCTTATCGCA 177
Query 361 ATCGCTTATTTCTCGATCCCAATCGAGCTGGTTTACTTCGTGAGCCGCACCAATGTGCCT 420
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 178 ATCGCTTATTTCTCGATCCCAATCGAGCTCCTCTACTTCGTGAGCCGCACCAATGTGCCT 237
Query 421 TCACCTTACAATTGGGTGGTCTGCGAGTTTATAGCCTTCATTGTTCTCTGCGGCATGACC 480
||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 238 TCACCGTACAATTGGGTCGTCTGCGAGTTTATAGCCTTCATTGTCCTCTGTGGCATGACC 297
Query 481 CATTTGCTCGCTGGTTTCACCTACGGGCCTCACTGGCCTTGGGTCATGACAGCTGTCACT 540
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 298 CATTTGCTCGCTGGTTTCACATACGGGCCTCACTGGGCTTGGGTCATGACAGCTGTCACT 357
Query 541 GTCTTCAAGATGCTGACTGGTATCGTCTCTTTCCTCACGGCACTCTCGTTAGTCACTCTC 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GTCTTCAAGATGCTGACTGGTATCGTCTCTTTCCTCACGGCGCTCTCGTTAGTCACTCTC 417
Query 601 TTACCATTGCTTCTTAAGGCTAAGGTTCGTGAGTTTATGTTGAGTAAGAAGACCAGAGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTACCATTGCTTCTTAAGGCTAAGGTTCGTGAGTTTATGTTGAGTAAGAAGACCAGAGAG 477
Query 661 CTTGATCGTGAGGTTGGGATCATTATGAAGCAGACTGAGACGAGTTTGCATGTTCGTATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTGATCGTGAGGTTGGGATCATTATGAAGCAGACTGAGACGAGTTTGCATGTTCGTATG 537
Query 721 CTCACTACCAAGATTAGGACGTCTCTTGATCGACACACCATTCTATACACTACGCTTGTG 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CTCACTACCAAGATTAGGACGTCTCTCGATCGACACACCATTCTATACACTACGCTTGTG 597
Query 781 GAGTTGTCCAAGACTCTGGGGCTCAAGAACTGTGCGGTTTGGATCCCGAATGAGATCAAG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGTTGTCCAAGACTCTTGGGCTCAAGAACTGTGCGGTTTGGATCCCGAATGAGATCAAG 657
Query 841 ACGGAGATGAATCTTACTCATGAGTTAAGACCGAGGATTGATGATGAGAATGAGAATGAG 900
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 658 ACGGAGATGAATCTTACGCACGAGTTAAGACCGAGGATCGATGATGAGAATGAGAATGAG 717
Query 901 CATTTTGGTGGTTATGCTGGGTTCTCGATACCGATTAGTGAGTCTGATGTTGTGAGGATT 960
|| | ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 718 AATGTGGGTGGTTATGCTGGGTTTTCGATACCTATTACTGAGTCTGATGTTGTGAGGATT 777
Query 961 AAGAGAAGCGAAGAGGTGAATATGTTGAGCCCTGGTTCTGTGCTTGCCTCAGTGACTAGC 1020
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 AAGAGAAGCGAAGAGGTGAATATGTTGAGTGCTGGTTCTGTGCTTGCCTCAGTGACTAGC 837
Query 1021 CGAGGGAAGTCAGGTCCTACGGTTGGGATAAGAGTCCCTATGCTTCGGGTTTGTAACTTT 1080
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 CGAGGCAAGCCAGGTCCTACGGTTGGGATAAGAGTCCCGATGCTTCGGGTTTGTAACTTT 897
Query 1081 AAAGGCGGGACACCAGAGGCGATTCACATGTGTTATGCGATATTGGTGTGTGTGCTTCCA 1140
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 898 AAAGGCGGGACACCTGAGGCGATTCACATGTGTTATGCAATCTTGGTGTGTGTGCTTCCA 957
Query 1141 TTGAGACAGCCGCAGGCTTGGACTTATCAAGAGCTTGAGATTGTTAAGGTGGTGGCTGAT 1200
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 CTGAGACAGCCGCAGGGTTGGACTTATCAAGAGCTTGAGATTGTTAAGGTCGTGGCTGAT 1017
Query 1201 CAAGTGGCGGTTGCAATCTCTCACGCCGTGATTCTTGAAGAATCTCAGCTTATGAGAGAG 1260
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1018 CAAGTGGCGGTTGCGATCTCTCACGCCGTGATTCTTGAAGAATCCCAGCTCATGAGAGAG 1077
Query 1261 AAACTCGCTGAACAGAACCGAGCGCTTCAGGTTGCGAGGGAGAACGCACTGAGAGCTAAT 1320
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1078 AAACTCGCGGAACAGAACCGAGCGCTTCAGGTTGCAAGGGAGAACGCGCTGAGAGCTAAT 1137
Query 1321 CAAGCCAAGGCTGCGTTCGAGCAGATGATGAGCGATGCAATGAGGTGTCCTGTGCGGTCC 1380
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 CAAGCGAAGGCTGCGTTCGAGCAGATGATGAGCGATGCAATGAGGCGTCCTGTGCGGTCC 1197
Query 1381 ATTCTCGGGTTGCTTCCTTTGATACTTCAGGATGGGAAGTTACCCGAGAACCAGACTGTT 1440
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1198 ATTCTCGGGTTGCTTCCTTTGATACTTCAGGACGGGAAATTACCCGAGAACCAGACTGTT 1257
Query 1441 ATCGTTGATGCAATGAGGAGAACCAGCGAGTTACTTGTACAGCTTGTAAACAATGCCGGA 1500
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 ATCGTTGATGCGATGAGGAGAACCAGCGAGTTACTTGTACAGCTTGTAAACAACGCCGGA 1317
Query 1501 GATATAAACAATGGGACAATCCGCGCTGCAGAGACTCATTATTTCAGTTTGCATTCGGTT 1560
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1318 GATATTAACAATGGGACAATCCGCGCTGCAGAGACACACTATTTCAGTTTGCATTCGGTT 1377
Query 1561 GTGAAAGAGTCAGCTTGCGTGGCGAGGTGTTTATGCATGGCAAATGGTTTTGGTTTCTCA 1620
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTGAAGGAGTCGGCTTGCGTGGCGAGGTGTTTATGCATGGCAAATGGTTTTGGTTTCTCA 1437
Query 1621 GCTGAAGTTTATAGAGCATTGCCTGACTACGTCGTAGGTGATGATAGAAAGGTCTTTCAA 1680
||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| | ||||
Sbjct 1438 ACTGAAATTTATAGAGCATTGCCTGATTACGTCGTAGGCGATGATAGGAAGGTATATCAA 1497
Query 1681 GCGATTTTGCATATGCTTGGGGTTCTAATGAATCGAAAGATCAAAGGGAATGTGACTTTC 1740
| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1498 GTGATCTTGCATATGCTTGGGGTTTTAATGAACCGAAAGATCAAAGGGAATGTGACTTTC 1557
Query 1741 TGGGTTTTTCCGGAAAGCGGGAACTCAGACGTATCAGAGAGGAAAGATATTCAAGAAGCG 1800
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1558 TGGGTTTTTCCGGAAAACGGAAACTCAGAAGTATCAGAGAGGAAAGATATTCAAGAAGCG 1617
Query 1801 GTTTGGCGACATTGCTATTCGAAAGAATACATGGAAGTTAGATTCGGATTCGAGGTAACT 1860
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1618 GTTTGGCGACAATGCTATTCTAAAGAATACATTGAAGTTAGATTCGGGTTCGAGGTAGCT 1677
Query 1861 GCTGAAGGTGAAGAGagtagtagtagtagtagtggtagtaACCTGGAGGAGGAGGAAGAG 1920
|| |||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 1678 GCAGAAGGTGAAGAGAGTAGTAGTAGTAGTA-----A----CCTGGAGGAGGAGGAGGAG 1728
Query 1921 AATCCGAGTCTCAACG-CTTGCCAAAACATTGTAAAGTATATGCAAGGGAATATTCGGGT 1979
| ||| |||||||||| || || ||||||||||||||||||||||||| |||||||||||
Sbjct 1729 ATTCCAAGTCTCAACGTCT-GCGAAAACATTGTAAAGTATATGCAAGGAAATATTCGGGT 1787
Query 1980 TGTTGAGGACGGTCTAGGTTTGGTGAAAAGCGTCTCAGTTGTTTTCCGGTTTCAACTCCG 2039
|||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1788 TGTTGAGGACTGTCTAGGTTTGGTGAAAAGCCTCTCGGTTGTTTTCCGGTTTCAACTCCG 1847
Query 2040 GCGATCGATGATGTCGA-GAGGCGGTGG---ATATTCTGGAGAAACGTTTAGAACCTCAA 2095
||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1848 GCGATCGATAATGTC-ACGAGGCGGTGGTGGATATTCTGGAGAAACGTTTAGAACCTCAA 1906
Query 2096 CTCCTCCGTCTACTAGCCACTGATCATTGACGTCAGGAAgggggggAGGGGAATGTAG 2153
| ||||| ||||| || ||||||||| ||| |||||| |||| |||| |||||||
Sbjct 1907 CACCTCCTTCTACAAG----TGATCATTGGCGTGAGGAAGTGGGG-AGGGTAATGTAG 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93092558780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5