BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04330.1

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919108 jgi|Araly1|919108|scaffold_100389.1                        505    2e-142


> Ahg919108 jgi|Araly1|919108|scaffold_100389.1
Length=345

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 321/344 (93%), Gaps = 4/344 (1%)
 Strand=Plus/Plus

Query  79   ATACAAC-A-AGA-TCCTGCTATGTCGTCCACGGCGAGAAATATTTCTGGCAGCGGGAAC  135
            ||||||| | | | ||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct  2    ATACAACAATAAACTCCGGCTATGTCGTCCACGGCGAGAAATGTTTCCGGCAGCGGGAAC  61

Query  136  CGAAAGTCGAGTAGGCTGCAGCGGCGGGCTCCACCGCCTCTTAAGATAAACCCTTGCGAA  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  62   CGAAAGTCGAGTAGGCTGCAGCGGCGGGCTCCACCGCCTCTTAAGATAAACCCTTCCGAA  121

Query  196  GCGAATTGGAAAGTGGCTATTCCTCTTCTATCACCTACGGAGTCGCCACCACAAAAACCA  255
            |||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||
Sbjct  122  GCGAATTGGAAAGTGGCTATTCCTTTTCTATCACCTACGGAGTCGCCGCCACAGAAGCCA  181

Query  256  CCGGCGGTAATGAAGAGGGAGGAGCAACGGTGGGGTAAAGAGGCGGAGAAGCCGCCGGTT  315
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  182  CCGGCGGTAATGAAGAGGGAGGAGCAGCGGTGGGGAAAAGAGGCGGAGAAGCCGCCGGTT  241

Query  316  TTTAAGAAGTGGCAGCATCCGGCAGCTCCGTTTTACTACCAGCCAGCACCGTCATCGAAT  375
            || |||||||||||||| || || |||||||||||||| |||||||| ||||||||||||
Sbjct  242  TTCAAGAAGTGGCAGCACCCTGCGGCTCCGTTTTACTATCAGCCAGCGCCGTCATCGAAT  301

Query  376  CAGCCGTTTGCATGGCCAAATTAACGGTCTCTT-AATATTAGGT  418
            |||||||||| |||||||||||||||||||||| |||| |||||
Sbjct  302  CAGCCGTTTGGATGGCCAAATTAACGGTCTCTTTAATACTAGGT  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24665527299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5