BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04340.1
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919109 jgi|Araly1|919109|scaffold_100390.1 815 0.0
Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1 409 2e-113
> Ahg919109 jgi|Araly1|919109|scaffold_100390.1
Length=521
Score = 815 bits (441), Expect = 0.0
Identities = 477/495 (96%), Gaps = 0/495 (0%)
Strand=Plus/Plus
Query 109 GAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTTTATTCATCCTC 168
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 15 GAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCGTTATTCATCCTC 74
Query 169 TCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCTAAAGAGTTA 228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 75 TCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCCAAAGAGTTA 134
Query 229 GCTCCAAAGCTTGATCTGACCAAAGCACATCTCTCTTCCATATTGGGAGTATCATTGCCC 288
||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 135 GCTCCAAAGCTTGATCTGAACAAAGCACATCTCTCTTCCATATTTGGAGTAGCATTGCCC 194
Query 289 AACTTAGAGGTGAAACAAGTCGTGTGGGCTATTGTTGCTCTGAAAGGCCTAGGAGGCTTA 348
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 195 AACTTAGAGGTGAAACAAGTCGTGTGGACTATTGTTGCTCTGAAAGGACTCGGAGGCTTA 254
Query 349 CTCTTTGTTATCGGCAACATCTTTGGTGCCTATCTTCTGGCTGTCTACTTGGTGGTTGTC 408
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 255 CTCTTTGTTATCGGCAACATCTTCGGTGCCTATCTTCTGGCTGTCCACTTGGTGGTTGTC 314
Query 409 AGTCCCATTTTATATGATTTCTACAACTATGGACCCGAGGACCGCCAATTCTCTCTTCTA 468
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 315 AGTCCCATTTTATATGATTTCTACAACTACGGACCCGAGGACCGCCAATTCTCTCTTCTA 374
Query 469 TTGACTGAATTCTTGCAGAGTGTTGCGCTTCTCGGGGCATTGCTATTTTTCATCGGAATG 528
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 375 TTGACTGAATTCTTACAGAGTGTTGCACTTCTCGGGGCTTTGCTATTTTTTATCGGAATG 434
Query 529 AAGAATTCAACAACGAGCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 588
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAGAATTCGACGACGACCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 494
Query 589 GCTTAGAGTTCTTCT 603
|||||||||||||||
Sbjct 495 GCTTAGAGTTCTTCT 509
> Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1
Length=827
Score = 409 bits (221), Expect = 2e-113
Identities = 408/495 (82%), Gaps = 26/495 (5%)
Strand=Plus/Plus
Query 104 ACATAGAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTTTATTCA 163
||| |||| | |||||||||||||| ||||||||||||||||||||||||||| | || |
Sbjct 117 ACACAGAG-AGATGGGTTTCTTCTCGTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 175
Query 164 TCCTCTCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCTAAAG 223
|||||||||||||||||||||||||||| | || || | | || ||||||||||
Sbjct 176 TCCTCTCCGCTTGGCAAATGTTCAATGA-T--GG---TG--G-T---CCTGCAGCTAAAG 223
Query 224 AGTTAGCTCCAAAGCTTGATCTGACCAAAGCACATCTCTCTTCCATATT-GGGAGTATCA 282
| || ||||||||||||||| || |||| |||||||| ||||| | ||| ||| ||| ||
Sbjct 224 AATTGGCTCCAAAGCTTGATTTGGCCAAGGCACATCTATCTTCTAGATTAGGG-GTAACA 282
Query 283 TTGCCCAACTTAGAGGTGAAACAAGTCGT-GTGGGCTATTGTTGCTCTGAAAGGCCTAGG 341
|||||||| ||||||||| |||||| || || ||||| |||| |||||||| | ||
Sbjct 283 TTGCCCAAAATAGAGGTGAGACAAGTTGTTGTTA-CTATTATTGCCCTGAAAGGAGTCGG 341
Query 342 AGGCTTACTCTTTGTTATCGGCAACATCTTTGGTGCCTATCTTCTGGCTGTCTACTTGGT 401
||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||
Sbjct 342 AGGCTTACTCTTTGTTATCGGAAACATCTTCGGTGCTTATCTTCTGGCTTTCTACTTGGT 401
Query 402 GGTTGTCAGTCCCATTTTATATGATTTCTACAACTATGGACC-CGAGGACCGCCAATTCT 460
|||||| |||| ||| | ||||||||||||||||| ||| | |||| || || ||||
Sbjct 402 TGTTGTCGGTCCTATTCTGTATGATTTCTACAACTACAAACCTC-AGGAACGTCATTTCT 460
Query 461 CTCTTCTATTGACTGAATTCTTGCAGAGTGTTGCGCTTCTCGGG-GCATTGCTATT-TTT 518
||||||| ||||| || ||||| |||||| |||| || || || ||||| || || |||
Sbjct 461 CTCTTCTGTTGACAGAGTTCTTACAGAGTATTGCACT-CTTTGGAGCATTACTCTTCTTT 519
Query 519 CATCGGAATGAAGAATTCAACAACGAGCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAA 578
|| ||||||||||| || || | ||||||||||| ||||||||||||||| || ||
Sbjct 520 -ATTGGAATGAAGAACTCGTCACC---CTCCAAGAGGAATCTGAAGAAGAGGACACCTAA 575
Query 579 GCCTAAAGCTGCTTA 593
||| |||||||||||
Sbjct 576 GCCGAAAGCTGCTTA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31146423189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5