BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04350.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1 1823 0.0
Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1 869 0.0
Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 826 0.0
Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 791 0.0
Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601 193 4e-48
> Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1
Length=1324
Score = 1823 bits (987), Expect = 0.0
Identities = 1169/1255 (93%), Gaps = 19/1255 (2%)
Strand=Plus/Plus
Query 43 TTTCTTGATAAC---CTTCTTCTTCTTCTTTTTGTATATGTATGAAGCAGCTTTTTGTGA 99
|||||||||||| ||||||||||||||| || | | | |||||| |||| ||||||||
Sbjct 1 TTTCTTGATAACGTTCTTCTTCTTCTTCTTCTTCT-TGTATATGAACCAGCCTTTTGTGA 59
Query 100 ATG-AATCTTCGAAATAGGTTAAAGAAACAAAAATGGAGACCAAAGAAT-TCGACTCTTA 157
||| |||||| ||||||||| ||||||| |||||| |||||||| || ||||||||||
Sbjct 60 ATGAAATCTT-AAAATAGGTTGTAGAAACATAAATGGCGACCAAAG-ATATCGACTCTTA 117
Query 158 CAGTGAGCGCAAAGCTTTCGACGAGACGAAAACAGGTGTGAAAGGTCTCATTGATGCTCA 217
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 118 CAGTGAGCGCAAAGCTTTCGACGAGACAAAAACAGGTGTGAAAGGTCTTGTTGATGCTCA 177
Query 218 CATCACTGAGATTCCTCGAATTTTCTGTCTCCCTCAAGGT-TC--CTTATCCGACAAGAA 274
||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||
Sbjct 178 CATCACTGAGATTCCTCGAATCTTCCGTCTCCCTCAAGGTGTCTTCTTATCCGACAAGAA 237
Query 275 ACCTTTTGTTTCTACCACTGATTTTGCGATCCCTATCATCGACTTCGAAGGCCTCCACGT 334
| ||| ||| ||| || | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 AACTTCTGTCTCTGCCTCGGATTTTGCGATCCCTATCATCGACTTTGAAGGCCTCCACGT 297
Query 335 CTCCCGTGAAGATATCGTTGGGAAGATCAAAGACGCTGCATCGAATTGGGGATTCTTCCA 394
||| |||||||||||||| ||||||||||||||||||||| |||||||| || |||||
Sbjct 298 CTCGCGTGAAGATATCGTCAAGAAGATCAAAGACGCTGCATCCAATTGGGGGTTTTTCCA 357
Query 395 GGTGATCAATCATGGTGTTCCTTTAAACGTTCTTCAAGAGATTCAAGATGGAGTTCGTAG 454
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 358 GGTGATTAATCATGGTGTTCCTTTAAACGTTCTTGAAGAGATTCAAGAAGGAGTTCGTAG 417
Query 455 GTTTCATGAGGAAGCTCCTGAGGTTAAGAAAACCTACTTCACTCGTGACGCCACTAAAAG 514
||||||||| |||| |||||||||||||| ||| |||||||| ||||| ||| |||||||
Sbjct 418 GTTTCATGAAGAAGATCCTGAGGTTAAGATAACTTACTTCACCCGTGATGCCGCTAAAAG 477
Query 515 ATTTGTCTACAATAGTAATTTCGATCTCTATAGTTCTTCTTCATGTGTTAACTGGAGAGA 574
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 478 ATTTGTCTACAATAGTAACTTCGATCTCTACAGGTCTTCTTCATGTGTTAACTGGAGAGA 537
Query 575 CTCTTTCGCTTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGATCTCCCTGTGGCTTG 634
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 538 CTCGTTCGCTTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGAACTCCCAGTGGCTTG 597
Query 635 CAGGGTTGCTATGTTCGAATACTCAAAGCATATGATGAGATTAGGTGATTTGCTCTTTGA 694
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGGGATGCTATGTTCGAATACTCAAAGCATATGATGAGATTAGGTGATTTGCTCTTTGA 657
Query 695 GCTTCTCTCAGAAGCTCTTGGTTTGAGATCTGATAAGCTTAAAAGCATGGATTGCATGAA 754
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 GCTTCTCTCAGAAGCTCTTGGTTTGAGATCTGATAAGCTTAAGAGCATGGATTGCATGAA 717
Query 755 GGGTTTGCTTTTGCTCTGCCATTATTATCCTCCATGTCCACAACCTGATCTAACCATCGG 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 GGGTTTGCTTTTGCTCTGCCATTATTATCCTCCATGTCCACAACCTGATCTAACTATCGG 777
Query 815 CACAAATAATCATTCAGACAACTCCTTCCTCACCATTCTTCTCCAGGACCAAATCGGTGG 874
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 778 CACAAATAATCATTCAGACAATTCCTTCCTCACAATTCTTCTTCAGGACCAAATCGGTGG 837
Query 875 TCTTCAAAT-CTTTCATCAAGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCTAG 933
||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCTTCAAATTCAT-CATCAGGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCTAG 896
Query 934 TCATCAACATGGGAGATTTCTTGCAGCTAATAACGAATGACAAAGT-CATAAGTGTGGAG 992
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 897 TCATCAACATGGGAGATTTCTTGCAGCTAATAACGAATGACAA-GTTCATAAGTGTGGAG 955
Query 993 CACAGGGTGCTAGCGAACAGGGCAGCTACACCGAGGATATCAGTAGCTAGCTTTTTCAGC 1052
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 CATAGGGTGCTAGCGAACAGGGCAGCTACACCGAGGATATCAGTAGCGAGCTTTTTCAGC 1015
Query 1053 ACAAGTATGCGTCCGAATTCAACTGTTTATGGACCAATCAAAGAGCTTCTCTCTGAAGAA 1112
|||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 1016 ACAAGTATGCTTCCGAATTCAACTGTTTACGGACCAATCAAGGAGATTCTCTCTGAAGAA 1075
Query 1113 AACCCTTCAAAATACAGAGTCATCGACTTGAAAGAATACACAGAGGGATACTTCAAGAAA 1172
|||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct 1076 AACCCTCCAAAATACAGAGTCATCGACTTAAAAGAATACACAGAGGGGTACTACAAGAAA 1135
Query 1173 GGCCTCGATGGAACATCGTATCTGTCGCATTACAAGATATGAAAGaaaaaaaCAATTGAA 1232
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1136 GGCCTCGATGGAACATCGTATCTGTCGCATTACAAGATATGAAA-AAAAAAACACTTGAA 1194
Query 1233 A-GAGTAAATCATCTCAAGTTTATTGTAAGATATTGGT-TCGTTTCATGCATCTA 1285
| |||||||||| |||| |||||||||||||||||||| | ||||||||||||||
Sbjct 1195 ATGAGTAAATCAGCTCAGGTTTATTGTAAGATATTGGTGT-GTTTCATGCATCTA 1248
> Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1
Length=1241
Score = 869 bits (470), Expect = 0.0
Identities = 788/940 (84%), Gaps = 28/940 (3%)
Strand=Plus/Plus
Query 286 CTACCACTGATTTTGCGATCCCTATCATCGACTTCGAAGGCCTCCACGTCTCCCGTGAAG 345
||||| | |||||||| || ||| |||||||||| | |||| |||| || || |||||||
Sbjct 139 CTACCTCGGATTTTGCAATACCTGTCATCGACTTTGCAGGCGTCCATGTGTCACGTGAAG 198
Query 346 ATATCGTTGG-GAAGATCAAAGACGCTGCATCGAATTGGGGATTCTTCCAGGTGATCAAT 404
| | ||| ||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 199 CCGTTG-TGGAGAAGATCAAAGACGCTGCAGAGAAGTGGGGAATCTTCCAGGTGATCAAC 257
Query 405 CATGGTGTTCCTTTAAACGTTCTTCAAGAGATTCAAGATGGAGTTCG-TAGGTTTCATGA 463
||||||||||||| || |||||| ||||||||||| |||||||| | ||||||||||||
Sbjct 258 CATGGTGTTCCTTCAAGTGTTCTTGAAGAGATTCAAAATGGAGTT-GTTAGGTTTCATGA 316
Query 464 GGAAGCTCCTGAGGTTAAGAAAACCTACTTCACTCGTGACGCCACTAAAAGATTTGTCTA 523
||||| |||||||||||||||| | |||||| | | |||| ||| |||| ||| ||||
Sbjct 317 GGAAGATCCTGAGGTTAAGAAATCTTACTTCTCGCTTGACTTCACAAAAACTTTTATCTA 376
Query 524 CAATAGTAATTTCGATCTCTATAGTTCTTCTTCATGTGTTAACTGGAGAGACTCTTTCGC 583
| | | ||||||||| || || ||||| ||| | || | |||||||||||||||||||||
Sbjct 377 CCACAATAATTTCGAACTGTACAGTTCGTCTGC-TG-G-TAACTGGAGAGACTCTTTCGC 433
Query 584 TTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGATCTCCCTGTGGCTTGCAGGGTTGC 643
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 434 TTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGATCTCCCAGTGGCTTGCAGGGATGC 493
Query 644 TATGTTCGAATACTCAAAGCATATGATGAGA-TTAGGTGATTTGCTCTTTGAGCTTCTCT 702
|||| ||| ||||||||||||| |||||| | ||||||| |||||||||||| |||||||
Sbjct 494 TATGATCGGATACTCAAAGCATGTGATGA-ACTTAGGTGGTTTGCTCTTTGAACTTCTCT 552
Query 703 CAGAAGCTCTTGGTTTGAGATCTGATAAGCTTAAA-AGCATGGATTGCATGAAGGGTTTG 761
||||||||||||||||||| ||||| || ||| || |||| ||||||||||||||||
Sbjct 553 CAGAAGCTCTTGGTTTGAGCTCTGAGGCCCT-AAAGAGTATGGGTTGCATGAAGGGTTTG 611
Query 762 CTTTTGCTCTGCCATTATTATCCTCCATGTCCACAACCTGATCTAACCATCGGCACAAAT 821
| | || ||||||||||||| || ||||||||| ||||||| ||||| | ||||||| |
Sbjct 612 CATATGATCTGCCATTATTACCCACCATGTCCAGAACCTGACCTAACTTTAGGCACAAGT 671
Query 822 AATCATTCAGACAACTCCTTCCTCACCATTCTTCTCCAGGACCAA-ATCGGTGGTCTTCA 880
| || || |||||| |||| ||||||||||||| |||||| || || |||||||||||
Sbjct 672 CAGCACTCCGACAACACCTTTATCACCATTCTTCTTCAGGAC-AACATTGGTGGTCTTCA 730
Query 881 AAT-CTTTCATCAAGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCTAGTCATCA 939
||| ||| |||||||||||||||||||||||||| ||| |||| |||||||| |||||||
Sbjct 731 AATTCTT-CATCAAGACTGTTGGGTCGATGTCTCGCCTCTTCCCGGGGCTCTTGTCATCA 789
Query 940 ACATGGGAGATTTCTTGCAGCTAATAACGAATGACAAAGT-CATAAGTGTGGAGCACAGG 998
|||| ||||||||||||||||| || ||||| ||||| || |||||| || || || |||
Sbjct 790 ACATAGGAGATTTCTTGCAGCTGATGACGAACGACAA-GTTCATAAGCGTTGAACATAGG 848
Query 999 GTGCTAGCGAACAGGGCAGCTACACCGAGGATATCAGTAGC-TAGCTTTTTCAGCACAAG 1057
||||| || || | || | ||||||||| ||| | || | ||||||||||| | ||
Sbjct 849 GTGCTTGCAAATAA---AGTTGGACCGAGGATTTCAATCGCGT-GCTTTTTCAGCTCGAG 904
Query 1058 TATGCGTCCGAATTCAACTGTTTATGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCC 1117
|||| ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 TATGAATCCAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCC 964
Query 1118 TTCAAAATACAGAGTCATCGACTTGAA--AGAATACACAGAGGGATAC-TTCAAGAAAGG 1174
| ||||||||||| | || ||| | | ||| ||| || |||||||| || | ||||||
Sbjct 965 TCCAAAATACAGAAACTTC-ACT-GTACCAGAGTACTCAAAGGGATACATTGA-GAAAGG 1021
Query 1175 CCTCGATGGAACATCGTATCTGTCGCATTACAAGATATGA 1214
| |||||||||||| ||||||| ||||||| |||||||
Sbjct 1022 TTTAGATGGAACATCGCATCTGTCACATTACAGGATATGA 1061
> Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447
Length=1095
Score = 826 bits (447), Expect = 0.0
Identities = 900/1109 (81%), Gaps = 70/1109 (6%)
Strand=Plus/Plus
Query 144 GAATTCGACTC-TTACAGTGAGCGCAAAGCTTTCGACGAGACGAAAA-CAGGTGTGAAAG 201
||| |||| || ||||| ||||| ||||| ||||||||||| |||| |||||| ||||
Sbjct 19 GAAGTCGA-TCGTTACACCGAGCGAAAAGCATTCGACGAGAC-AAAAGTAGGTGTAAAAG 76
Query 202 GTCTCATTGATGCTCACATCACTGAGATTCCTCGAATTTTCTGTC-TCCCTCAAGGTTCC 260
| ||||| |||||| | ||||| || || |||||||| ||| | ||||||||| | ||
Sbjct 77 GACTCATCGATGCTAAGATCACCGAAATCCCTCGAATCTTC-CACGTCCCTCAAGATACC 135
Query 261 TTATCC-GACAAGAAACCTTTTGTTTCTACCACTGATTTTGCGATCCCTATCATCGACTT 319
||| || ||||||||||| | || || | || || | | |||||||| |||||||||
Sbjct 136 TTA-CCAGACAAGAAACCCTCTG-TT-T--CA--GACCTAGAGATCCCTACCATCGACTT 188
Query 320 CG-AAGGCCTCCACGT---C------TCCCGTGAAGATA-TCGTTG-GGAAGATCA-A-A 365
| || || | |||| | || |||||||| | |||| | | ||| ||| | |
Sbjct 189 TGCAA-GCGTTTACGTGGACGAAGAGTCACGTGAAGA-AGTCGTAGAGAAAG-TCAGATA 245
Query 366 -GACGCTGCATCGAATTGGGGATTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAACGT 424
| || || | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 246 TG-CGGTGGA--GAATTGGGGGTTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAACGT 302
Query 425 TCTTCAAGAGATTCAAGATGG-AGTTCGTAGGTTTCATGAGGAAGC---TCCTGAGGTTA 480
|||| | |||||| ||||||| | | ||||| ||||| ||||||| ||||||||| |
Sbjct 303 TCTTGAGGAGATTAAAGATGGGACT-CGTAGATTTCACGAGGAAGAAGATCCTGAGGTCA 361
Query 481 AGAAAACCTACTTCACTCG-T-GA---CGCCACTAA-AAGATTTGTCTACAATAGTAATT 534
||||| | |||| ||||| | || | |||| || || ||||| ||||| ||||||||
Sbjct 362 AGAAATCATACT--ACTCGCTTGATTTCACCACGAACAA-ATTTGCCTACAGTAGTAATT 418
Query 535 TCGATCTCTATAGTTCTTCTTCATGTGTTAACTGGAGAGACTCTTTCGCTTGTTACATGG 594
||||||| ||||||||||| | | |||||| |||||||| ||| || ||||||||||||
Sbjct 419 TCGATCTATATAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATCTCTTGTTACATGG 478
Query 595 CTCCTGATCCTCCAAAC-CCTGAGGATCTCCCTGTGGCTTGCAGGGTTGCTATG-TTCGA 652
||||||||||||||| | |||||||| ||||| | | ||||||||| ||||||| || ||
Sbjct 479 CTCCTGATCCTCCAA-CTCCTGAGGAACTCCCAGAGACTTGCAGGGATGCTATGATT-GA 536
Query 653 ATACTCAAAGCATATGATGAGATTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCT 712
||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 537 ATACTCAAAGCATGTGTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAGAAGCACT 596
Query 713 TGGTTTGAGATCTGATAAGCTTAAAAGCATGGATTGCATGAAGGGTTTGCTTTTGCTCTG 772
||||||| |||||| | ||||| ||||||| |||| ||||| |||||||| || ||||
Sbjct 597 AGGTTTGAAATCTGAGATCCTTAAGAGCATGGGTTGCTTGAAGAGTTTGCTTATGATCTG 656
Query 773 CCATTATTATCCTCCATGTCCACAACCTGATCTAACCATCGGCACAAATAATCATTCAGA 832
|||||||| || || |||||||||||||| ||||| | || | || ||| ||||||||
Sbjct 657 TCATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACATTCAGA 716
Query 833 CAACTCCTTCCTCACCATTCTTCTCCAGGACCAA-ATCGGTGGTCTTCAAAT-CTTTCAT 890
|||||| |||||||| ||||||| || ||| || || |||||||||||||| ||| |||
Sbjct 717 CAACTCTTTCCTCACGGTTCTTCTTCAAGAC-AACATTGGTGGTCTTCAAATTCTT-CAT 774
Query 891 CAAGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCTAGTCA-TCAACATGGGAGA 949
||||||| |||||| |||||||||||| |||| || ||||| || | ||||||| |||||
Sbjct 775 CAAGACTCTTGGGTTGATGTCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACATCGGAGA 833
Query 950 TTTCTTGCAGCTAATAACGAATGACAAAGTCA-TAAGTGTGGAGCACAGGGTGCTAGCGA 1008
|||||||||||| ||||| || || || || ||||||||||||| |||||||| ||||
Sbjct 834 TTTCTTGCAGCTGATAACCAACGATAA-GTTTGTAAGTGTGGAGCATAGGGTGCTTGCGA 892
Query 1009 ACAGGGCAGCTAC-ACCGAGGATATCAGTAGCTAGCTTTTTCAGCACAAGTATGCGTCCG 1067
| | || | | ||| ||||| |||||||| |||||||||||| ||||||| ||| |
Sbjct 893 ATA---CA-CGAGGACCAAGGATTTCAGTAGCGAGCTTTTTCAGCTCAAGTATACGTGAG 948
Query 1068 AATTCAACTGTTTATGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCCTTCAAAATAC 1127
|||||||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||
Sbjct 949 AATTCAACAGTTTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATAC 1008
Query 1128 AGAG-TCATCGACTTGAA-AGAATACACAGAGGGATACTTCAAGAAAGGCCTCGATGGAA 1185
|||| | | | |||| || ||||||| |||| |||||||| |||||||| || |||||||
Sbjct 1009 AGAGAT-A-CAACTTTAAGAGAATACTCAGAAGGATACTTTAAGAAAGGTCTTGATGGAA 1066
Query 1186 CATCGTATCTGTCGCATTACAAGATATGA 1214
||||| |||||||| ||| || |||||||
Sbjct 1067 CATCGCATCTGTCGAATTTCAGGATATGA 1095
> Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1
Length=1223
Score = 791 bits (428), Expect = 0.0
Identities = 895/1114 (80%), Gaps = 57/1114 (5%)
Strand=Plus/Plus
Query 144 GAATTCGACT-CTTACAGT-GAGCGCAAAGCTTTCGACGAGACGAAAAC-AGGTGTGAAA 200
|||||| | | |||||| | ||||| ||||||||||||||||| ||||| |||||| |||
Sbjct 20 GAATTCCA-TCCTTACA-TCGAGCGTAAAGCTTTCGACGAGAC-AAAACAAGGTGTAAAA 76
Query 201 GGTCTCATTGATGCTCACATCACT-GAGATTCCTCGAATTTTCTGTCTCCCTCAAGGT-T 258
|| ||| | || ||| | |||||| || | || || || ||| | |||||||| | |
Sbjct 77 GGCCTCGTGGACGCTAAAATCACTCAAG-TCCCACGTATCTTCCACCACCCTCAAGATAT 135
Query 259 CCTTATCCGACAAGAAACCTTTTGT-T-TCTACCACTGATTTTGCGATCCCTATCATCGA 316
|||| ||||||||||||| | ||| | | | || || | | |||||||||||||||
Sbjct 136 -CTTAACCGACAAGAAACCCTCTGTCTGTGTTTCA--GACCTAGAGATCCCTATCATCGA 192
Query 317 CTTCG-AAGGCCTCCACGT--------C-TCCCGTGAAGATATCGTTG-GGAAGATCAAA 365
|| | || || ||||||| | || ||||||| |||| | | ||| |||||
Sbjct 193 TTTTGCAA-GCGTCCACGTGGACACAGCGTCACGTGAAGCCGTCGTAGAGAAAG-TCAAA 250
Query 366 GA--CGCTGCATCGAATTGGGGATTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAACG 423
| || || | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 251 TATGCGGTGGA--GAATTGGGGATTCTTCCAGGTGATCAATCATGGTATTCCTTTAAACG 308
Query 424 TTCTTCAAGAGATTCAAGATGGAGTTCGTAGGTTTCATGAGGAAGCTCCTGAGGTTAAGA 483
||||| |||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 309 TTCTTGAAGAGATTAAAGATGCAGTTCGTAGGTTTCATGAGGAAGATCCTGAGGTCAAGA 368
Query 484 AAACCTACTTCACTCGTGA---CGCCACTAAAAGATTTGTCTACAATAGTAA-TTTCGAT 539
|| |||||| | ||||| ||||| ||||| |||||| || || ||||| ||| |||
Sbjct 369 AATTATACTTCTCGCGTGATGACGCCAATAAAAAATTTGTGTATAACAGTAACTTT-GAT 427
Query 540 CTCTATAGTTCTTCTTCATGTGTTAACTGGAGAGACTCTTTCGCTTGTTACATGGCTCCT 599
|| || ||||||| | | |||||| |||||||| |||||| |||||||||| |||||
Sbjct 428 CTATACGGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTACATAGCTCCA 487
Query 600 GATCCTCCAAAC-CCTGAGGATCTCCCTGTGGCTTGCAGGGTTGCTATGTTCGAATACTC 658
||||||||| | |||||||| |||||| | ||||||||| ||||||||| ||||||||
Sbjct 488 GATCCTCCAG-CTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCTATGTTTGAATACTC 546
Query 659 AAAGCATATGATGAGATTAGGTGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCTTGGTTT 718
|||||| || |||| ||||||| ||| || ||||||||||||||||||||||| |||||
Sbjct 547 GAAGCATGTGTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCTCTAGGTTT 606
Query 719 GAGATCTGATAAGCTTAAAAGCATGGATTGCATGAAGGGTTTGCTTTTGCTCTGCCATTA 778
|| ||| || | ||||| |||||||||||| ||||| ||||||| || ||||||||||
Sbjct 607 GAAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTTATGATCTGCCATTA 666
Query 779 TTATCCTCCATGTCCACAACCTGATCTAACCATCGGCACAAATAATCATTCAGACAACTC 838
||| || || |||||||||||||| ||||| | || | || ||| || ||||| |||||
Sbjct 667 TTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACACTCAGATAACTC 726
Query 839 CTTCCTCAC-CATTCTTCTCCAGGACCAA-ATCGGTGGTCTTCAAATCT-TTCATCAAGA 895
||||||||| | |||||||||| ||| || || |||||||||||||| | ||||||||||
Sbjct 727 CTTCCTCACGC-TTCTTCTCCAAGAC-AACATTGGTGGTCTTCAAAT-TATTCATCAAGA 783
Query 896 CTGTTGGGTCGATGTCTCTCCTATTCCAGGG-GCTCTAGTCATCAACATGGGAGATTTCT 954
|| ||||||||||||||||| | | ||| || ||||| ||| ||||||| ||||||||||
Sbjct 784 CTCTTGGGTCGATGTCTCTCATCT-CCATGGAGCTCTCGTCGTCAACATTGGAGATTTCT 842
Query 955 TGCAGCTAATAACGAATGACAAAGTCA-TAAGTGTGGAGCACAGGGTGCTAGCGAACAGG 1013
||||||| |||||||| || || || ||||||||||||| |||||||| || || ||
Sbjct 843 TGCAGCTGATAACGAACGATAA-GTTTGTAAGTGTGGAGCATAGGGTGCTTGCAAATAGA 901
Query 1014 GCA-GCTACACCGAGGATATCAGTAGCTAGCTTTTTCAGCACAAGTATGCGTCCGAATTC 1072
|| | || | ||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 902 -CAAGG-AC-CA-AGGATTTCAGTAGCTAGCTTTTTCAGCTCAAGTATGCGTCCAAATTC 957
Query 1073 AACTGTTTATGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCCTTCAAAATACAGAGT 1132
| ||||| ||||| || ||||||||| | ||||||||||||||| ||||||||||||
Sbjct 958 CAGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGA 1017
Query 1133 CATCGACT-TGAAAGAATACACAGAGGGATACTTCAAGAAAGGCCTCGATGGAACATCGT 1191
||| || | ||||| || || | || || ||||||| |||||||||||||||
Sbjct 1018 CATA-ACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAACATCGC 1076
Query 1192 ATCTGTCGCATTACAAG-ATATGAAAGaaaaaaa 1224
|||| |||||| | || |||||||| |||||||
Sbjct 1077 ATCTATCGCAT-ATTAGGATATGAAAAAAAAAAA 1109
> Ahg910347 jgi|Araly1|910347|Al_scaffold_0001_601
Length=1089
Score = 193 bits (104), Expect = 4e-48
Identities = 433/586 (74%), Gaps = 45/586 (8%)
Strand=Plus/Plus
Query 567 TGGAGAGACT-CTTTCGCTTGTTACATGGCTCCTGATCCT-CCAAACCCTGAGGATC-T- 622
|||||||| | | ||| |||||| | ||| || |||||| ||| | || ||||| | |
Sbjct 445 TGGAGAGA-TACACTCGGTTGTTATACGGCACCAGATCCTCCCAGA-CCGGAGGA-CTTA 501
Query 623 CCCTGTGGCTTGCAGGGTTGCT-ATG-TTCGAATACTCAAAGCATA-TGATGAGATTAGG 679
||| | ||||| ||| | | ||| || || ||||||||| | | |||||| ||||||
Sbjct 502 CCC-GCCGCTTG-TGGGGAGATGATGATT-GAGTACTCAAAGGA-AGTGATGAAATTAGG 557
Query 680 TGATTTGCTCTTTGAGCTTCTCTCAGAAGCTCTTGGTTTGAG-ATCT-GATAAGCTTAAA 737
| | ||||||||||||||||||||||||||||| || || | | || | | | || ||
Sbjct 558 TAAATTGCTCTTTGAGCTTCTCTCAGAAGCTCTAGGGTTAAACA-CTAG-TCACCTCAAG 615
Query 738 -AGCATGGATTGCATGAAGGGTTTGCTTTTGCTCTGCCATTATTATCCTCCATGTCCACA 796
| ||||||||||| || ||||| |||||| |||||||||| || |||||||| ||
Sbjct 616 GA-CATGGATTGCACCAACTCCTTGCTGTTGCTCGGCCATTATTACCCGCCATGTCCCCA 674
Query 797 ACCTGATCTAACCATCGGCACAAATAATCA-TTCAGACAACTCCTTCCTCACCATTCTTC 855
||| || || || | || | || || ||| |||||||| || ||||| |||||||
Sbjct 675 ACCCGACCTTACTTTAGGTTTGACCAAACACTTC-GACAACTCTTTTCTCACTATTCTTC 733
Query 856 TCCAGGACCAAATCGGTGGTCTTCAAATCTTTC-ATCAAGACTGTTGGGTCGATGTCTC- 913
| || ||||| ||||| || |||||| | | || || | | | |||||| ||||| ||
Sbjct 734 TTCAAGACCATATCGGAGGGCTTCAAGT-TCTCCATGACCAATATTGGGTTGATGT-TCC 791
Query 914 TCCTATTCCAGGGGCTCTAGTCATCAACATGGGAGAT-TTCTTGCAGC-TAATAACGAAT 971
|||| |||| || ||||| || | ||| | |||||| ||||| |||| || |||| ||
Sbjct 792 TCCTGTTCCCGGAGCTCTTGTTGTTAACGTTGGAGATCTTCTT-CAGCATA-TAACAAAC 849
Query 972 GACAAAGT-CATAAGTGTGGAGCACAGGGTGCTAGCGAACAGGGCAGCTACACCGAGGAT 1030
||||| || || |||||||||||| ||||| | ||||| | |||| ||| || ||
Sbjct 850 GACAA-GTTCAAAAGTGTGGAGCATAGGGTTTTGGCGAAT-GT--AGCTGGACCAAGAAT 905
Query 1031 ATCAGTAGCTAGCTTT-TTCAGCACAAGTATGCG-TC-CGAAT--TCAACTGTTTATGGA 1085
||||| ||| | ||| ||||| | |||| | | ||||| || | |||||||||
Sbjct 906 TTCAGTGGCTTG-TTTCTTCAGTTC--GTATTTGATGGCGAATCCTCGA--GTTTATGGA 960
Query 1086 CCAATCAAAGAGCTTCTCTCTGAAGAAAACCCTTCAAAATACAGAG 1131
|| ||||||||| || | |||||| |||| ||| | ||||| ||||
Sbjct 961 CCCATCAAAGAGATTTTGTCTGAACAAAATCCTCCCAAATATAGAG 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5