BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04360.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919111 jgi|Araly1|919111|scaffold_100392.1 1744 0.0
> Ahg919111 jgi|Araly1|919111|scaffold_100392.1
Length=1189
Score = 1744 bits (944), Expect = 0.0
Identities = 1116/1198 (93%), Gaps = 15/1198 (1%)
Strand=Plus/Plus
Query 205 ATTTAGATTGTTTTGTAGTCAAATGGATCTAACAGACCGTCGTAACCCTTTTAAC-AATC 263
||||||| | |||| | ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 ATTTAGA-T-TTTTCTTGTCAAATGGATCTAACAGACCGTCGTAACCCTTTT-ACTAATC 57
Query 264 TTGTTTTTCCGCCGCCGCCTCCGCCGCCATCCACGACCTTCACAAGCCCTATATTCCCAC 323
| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 58 TGGTTTTTCCGCCGCCTCCTCCGCCGCCATCGACGACCTTCACAAGCCCTATTTTCCCAC 117
Query 324 GAACAAGCTCTTCCGGCACCAATTTCCCCATTCTGGCCATCGCAGTGATTGGAATCTTAG 383
|||||||||| |||||||| |||||||||||| | |||||||||||||| ||||||||||
Sbjct 118 GAACAAGCTCATCCGGCACGAATTTCCCCATTATCGCCATCGCAGTGATCGGAATCTTAG 177
Query 384 CCACTGCGTTCTTACTTGTAAGTTACTACATCTTCGTGATCAAATGCTGTCTTAATTGGC 443
| ||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 178 CTACTGCGTTCTTGCTTGTAAGTTACTACATCTTCGTGATAAAATGCTGCCTAAATTGGC 237
Query 444 ACCAAATCGACATCTTTCGCCGCCGCAGACGAAGCAGTGACCAAAACCCTCTAATGATTT 503
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACCAAATCGACATCTTCCGCCGCCGCAGACGAAGCAGTGACCAAAACCCTCTAATGATTT 297
Query 504 ACTCTCCTCATGAGGTAAACAGAGGACTAGACGAATCCGCCATTAGAGCTATCCCAGTCT 563
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 ACTCTCCTCATGAAGTAAACAGAGGACTCGACGAATCCGCCATTAGAGCTATCCCAGTCT 357
Query 564 TCAAATTCAAGAAGAGAGACGTTGTTGCAGGAGAAGAAGATCAGAGTAAGAACTCTCAAG 623
| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 358 TTAAATTCAAGAAGAGAGACGTTGTTGCAGGAGAAGATGATCAGAATAAGAACTCTCAAG 417
Query 624 AATGCTCTGTTTGTTTAAACGAGTTTCAAGAAGACGAGAAGCTAAGGATTATTCCTAACT 683
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AATGCTCTGTTTGCTTAAACGAGTTTCAAGAAGACGAGAAGCTAAGGATTATTCCCAACT 477
Query 684 GCTGCCACGTGTTTCACATTGATTGCATTGATATCTGGCTTCAGGGCAACGCAAATTGTC 743
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 478 GCTGCCACGTGTTTCACATTGATTGCATTGATATTTGGCTTCAGGGGAACGCTAATTGTC 537
Query 744 CCTTGTGCAGAACCAGCGTTTCTTGCGAAGCAAGTTTCACTCTTGACCTAATCTCTGCAC 803
| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 538 CATTGTGCAGAACCAGCGTTTCTTGCGACGCAAGTTTCTCTCTTGACCTAATCTCTTCAC 597
Query 804 CGAGCTC-TCCTCGGGAGAATAGCCCTCATTCTCGGAACAGGAATCTCGAACCCGGCCTG 862
||| ||| ||| | |||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 598 CGATCTCTTCC-CCGGAGAATAGCCCTCATTCACGGAATAGGAATCTTGAACCCGGCCTG 656
Query 863 GTTCTAGGAGGCGATGATGACTTCGTCGTCATAGAGCTTGGGGCCAGTAATGGTAACAAC 922
||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 657 GTTCTTGGAAGCGATGATGACTTCGTCGTGATCGAGCTTGGGGCCAGTAATGGTAATAAC 716
Query 923 AGAGAAAGCGTGAGAAACATAGACTTCCTTACGGAGCAAGAAAGGGTTACCTCGAATGAG 982
|| | |||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||
Sbjct 717 AGGGGAAGCGTGAGAAACAGAGACTTCCTTACGGAACAAGAAAGGGTTGCCTCGAACCAG 776
Query 983 GTCTCGACCGGAAACAGCCCGAAATCGGTGAGTCCTTTGCCTATAAAGTTTGGTAATCGG 1042
|||||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||
Sbjct 777 GTCTCGACCGGAAACAGCTCGAAATCGATGAGCCCTTTGCCTAGAAAGTTTGATAATCGC 836
Query 1043 GGAATGTATAAGAAAGAAAGGAAATTTCACAAAGTGACGAGTATGGGAGACGAATGTATC 1102
|||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 837 GGAATGCATAAGAAAGAGAGCAAATTTCACAAAATGACGAGTATGGGAGACGAATGTATC 896
Query 1103 GATACTAGAGGCAAAGATGGTCATTTTGGTGAAATTCAGCCCATAAGAAGATCGATCTCG 1162
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 GATACTCGAGGCAAAGATGGTCATTTTGGTGAAATTCACCCCATAAGAAGATCGATCTCG 956
Query 1163 ATGGATTCATCAGTGGATCGTCAGCTGTACTTGGCGGTCCAAGAGGAAATCAGCCGGAGA 1222
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 ATGGATTCATCAGTGGATCGTCAGCTGTACTTGGCGGTCCAAGAAGAAATCAGCCGGAGA 1016
Query 1223 AACAGGCAGATTCCGGTAGCTGGAGACGGTGAAGATAGTA---GCAGTAGTGGTGGTGGT 1279
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1017 AACAGGCAGATTCCGGTAGCTGGAGACAGTGAAGATAGTACTAGCAGTAGTGGTGGTGGT 1076
Query 1280 AATAGCAGAGTCATGAAGAGATGTTTCTTCTCTTTTGGAAGTAGTAGAACTTC-AAAAAG 1338
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 AATAACAGAGTGATGAAGAGATGTTTCTTCTCTTTTGGAAGTAGTAGAACTTCTAAAAA- 1135
Query 1339 TTCTTCAATATTACCTGTTTATTTGGAACCCTAATTCTGTATTTTCCTCTTCTTGATT 1396
||| |||||||||||||||||||||||||||||||| ||||| |||||| || |||
Sbjct 1136 TTCCTCAATATTACCTGTTTATTTGGAACCCTAATT--GTATT--CCTCTTTTTCATT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5