BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04370.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919112 jgi|Araly1|919112|scaffold_100393.1                        590    3e-168


> Ahg919112 jgi|Araly1|919112|scaffold_100393.1
Length=445

 Score =  590 bits (319),  Expect = 3e-168
 Identities = 378/406 (93%), Gaps = 5/406 (1%)
 Strand=Plus/Plus

Query  1    ATGGATCAAGGAGGTCGTAGCAGT---GGTAGTGGAGGAGGAGGAGCCGAGCAAGGGAAG  57
            ||||| ||||||||||||||| ||   ||| | |||||||||||||||||||||  ||||
Sbjct  21   ATGGACCAAGGAGGTCGTAGCGGTGGGGGTGGAGGAGGAGGAGGAGCCGAGCAAATGAAG  80

Query  58   TACCGTGGAGTAAGGAGACGACCTTGGGGTAAATACGCCGCGGAAATAAGAGATTCGAGG  117
            |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||
Sbjct  81   TACCGTGGAGTAAGGAGACGGCCTTGGGGCAAATACGCAGCAGAAATAAGAGATTCTAGG  140

Query  118  AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCGGAAGACGCGGCTCGAGCC  177
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  141  AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCAGAAGACGCGGCTCGAGCC  200

Query  178  TATGACCGAGCCGCCTATTCAATGAGAGGCAAAGCTGCCATTCTCAACTTCCCTCACGAG  237
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  201  TATGACCGAGCCGCCTATTCAATGAGAGGAAAAGCCGCCATTCTCAACTTCCCTCACGAG  260

Query  238  TATAACATGGGAACCGGATCCTCATCCACTGCGGCTAATTCTTCTTCCTCGTCGCAG-CA  296
            ||||||||||||||||||||||| |||||||| |||| |||||||||||||||| || ||
Sbjct  261  TATAACATGGGAACCGGATCCTCTTCCACTGCAGCTAGTTCTTCTTCCTCGTCG-AGGCA  319

Query  297  AGTTTTTGAGTTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAATATGGAGA  356
            |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  320  AGTTATTGAATTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAGTATGGAGA  379

Query  357  GAACTATAACAAGACTCATAATATCAACATGGGCAAGAGGCAATAA  402
            |||||||||||||||||||||||||||||  || ||||||||||||
Sbjct  380  GAACTATAACAAGACTCATAATATCAACACCGGTAAGAGGCAATAA  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5