BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04370.1 Length=402 Score E Sequences producing significant alignments: (Bits) Value Ahg919112 jgi|Araly1|919112|scaffold_100393.1 590 3e-168 > Ahg919112 jgi|Araly1|919112|scaffold_100393.1 Length=445 Score = 590 bits (319), Expect = 3e-168 Identities = 378/406 (93%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 1 ATGGATCAAGGAGGTCGTAGCAGT---GGTAGTGGAGGAGGAGGAGCCGAGCAAGGGAAG 57 ||||| ||||||||||||||| || ||| | ||||||||||||||||||||| |||| Sbjct 21 ATGGACCAAGGAGGTCGTAGCGGTGGGGGTGGAGGAGGAGGAGGAGCCGAGCAAATGAAG 80 Query 58 TACCGTGGAGTAAGGAGACGACCTTGGGGTAAATACGCCGCGGAAATAAGAGATTCGAGG 117 |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||| Sbjct 81 TACCGTGGAGTAAGGAGACGGCCTTGGGGCAAATACGCAGCAGAAATAAGAGATTCTAGG 140 Query 118 AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCGGAAGACGCGGCTCGAGCC 177 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 141 AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCAGAAGACGCGGCTCGAGCC 200 Query 178 TATGACCGAGCCGCCTATTCAATGAGAGGCAAAGCTGCCATTCTCAACTTCCCTCACGAG 237 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 201 TATGACCGAGCCGCCTATTCAATGAGAGGAAAAGCCGCCATTCTCAACTTCCCTCACGAG 260 Query 238 TATAACATGGGAACCGGATCCTCATCCACTGCGGCTAATTCTTCTTCCTCGTCGCAG-CA 296 ||||||||||||||||||||||| |||||||| |||| |||||||||||||||| || || Sbjct 261 TATAACATGGGAACCGGATCCTCTTCCACTGCAGCTAGTTCTTCTTCCTCGTCG-AGGCA 319 Query 297 AGTTTTTGAGTTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAATATGGAGA 356 |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 320 AGTTATTGAATTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAGTATGGAGA 379 Query 357 GAACTATAACAAGACTCATAATATCAACATGGGCAAGAGGCAATAA 402 ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 380 GAACTATAACAAGACTCATAATATCAACACCGGTAAGAGGCAATAA 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14422812642 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5