BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04380.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1 1596 0.0
Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1 852 0.0
Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 712 0.0
Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 706 0.0
> Ahg470414 jgi|Araly1|470414|fgenesh2_kg.1__368__AT1G04380.1
Length=1241
Score = 1596 bits (864), Expect = 0.0
Identities = 998/1064 (94%), Gaps = 3/1064 (0%)
Strand=Plus/Plus
Query 4 GAGATAAACAAAACACAAAAATGGTGGTGAAAAACTCGATCAAATTCAACTC-T-CAG-A 60
||||||||||||| ||| ||||||||| ||||||||||||| ||| |||||| | ||| |
Sbjct 1 GAGATAAACAAAATACATAAATGGTGGCGAAAAACTCGATCGAATGCAACTCTTACAGTA 60
Query 61 GTGAGCGCAAGTCTTTGGAAGAGACCAAGGTTCCTCCTATCTTTGGCCTTCCTCCAGATG 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTGAGCGCAAGTCTTTCGAAGAGACCAAGGTTCCTCCTATCTTTGGCCTTCCTCCAGTTG 120
Query 121 CCTTAGACGACAAGAAACCTACCTCGGATTTTGCAGTACCTATCATCGACTTTGCAGGCG 180
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 CCTTAGACGACAAGAAACCTACCTCGGATTTTGCAATACCTGTCATCGACTTTGCAGGCG 180
Query 181 TCCACAAGTCGCGTGAAGCCGTTGTGGAGAAGATCAAAGCCGCTGCAGAGAATTGGGGAA 240
|||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 181 TCCATGTGTCACGTGAAGCCGTTGTGGAGAAGATCAAAGACGCTGCAGAGAAGTGGGGAA 240
Query 241 TTTTCCAGGTGATCAACCATGGTGTTCCTTTAAGTGTTCTTGAAGAGATTCAAAATGGAG 300
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCTTCCAGGTGATCAACCATGGTGTTCCTTCAAGTGTTCTTGAAGAGATTCAAAATGGAG 300
Query 301 TTGTTAGGTTTCATGAGGAAGATCCGGAGGTTAAGAAATCTTACTTCTCGCTTGACCTCA 360
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 301 TTGTTAGGTTTCATGAGGAAGATCCTGAGGTTAAGAAATCTTACTTCTCGCTTGACTTCA 360
Query 361 CCAAAACATTTATCTACCACAATAATTTCGAACTTTACAGTTCGTCTGCTGGTAACTGGA 420
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CAAAAACTTTTATCTACCACAATAATTTCGAACTGTACAGTTCGTCTGCTGGTAACTGGA 420
Query 421 GAGACTCTTTCGTTTGTTACATGGATCCCGATCCTTCAAACCCTGAAGATCTCCCAGTGG 480
|||||||||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||
Sbjct 421 GAGACTCTTTCGCTTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGATCTCCCAGTGG 480
Query 481 CTTGCAGAGATGCTATGATCGGATACTCGAAGCATGTGATGAGTTTAGGTGGCTTGCTCT 540
||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 481 CTTGCAGGGATGCTATGATCGGATACTCAAAGCATGTGATGAACTTAGGTGGTTTGCTCT 540
Query 541 TTGAACTTCTCTCAGAAGCTCTTGGTTTGAACTCTGATACTCTTAAGAGTATGGGTTGCA 600
|||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||
Sbjct 541 TTGAACTTCTCTCAGAAGCTCTTGGTTTGAGCTCTGAGGCCCTAAAGAGTATGGGTTGCA 600
Query 601 TGAAGGGTTTGCATATGATCTGCCATTATTACCCTCCCTGTCCACAACCTGACCAAACCT 660
|||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| |
Sbjct 601 TGAAGGGTTTGCATATGATCTGCCATTATTACCCACCATGTCCAGAACCTGACCTAACTT 660
Query 661 TAGGCACAAGTAAGCATTCCGACAACACTTTTATCACTATTCTTCTTCAGGACAACATCG 720
||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 661 TAGGCACAAGTCAGCACTCCGACAACACCTTTATCACCATTCTTCTTCAGGACAACATTG 720
Query 721 GTGGTCTTCAAATTCTTCATCAAGACTGTTGGGTTGATGTCTCGCCTCTTCCCGGGGCAC 780
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 721 GTGGTCTTCAAATTCTTCATCAAGACTGTTGGGTCGATGTCTCGCCTCTTCCCGGGGCTC 780
Query 781 TTATCATCAACATCGGAGATTTCTTGCAGCTAATGACGAACGACAAGTTCATAAGCGTTG 840
|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 TTGTCATCAACATAGGAGATTTCTTGCAGCTGATGACGAACGACAAGTTCATAAGCGTTG 840
Query 841 ATCATAGGGTGCTTACAAACAGAGTTGGACCGAGGATTTCAATCGCATGCTTTTTCAGCT 900
| |||||||||||| |||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 841 AACATAGGGTGCTTGCAAATAAAGTTGGACCGAGGATTTCAATCGCGTGCTTTTTCAGCT 900
Query 901 CGAGTATGAATCCAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGAGTATGAATCCAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAA 960
Query 961 ACCCTCCAAAATACAGAGACTTCACTATACCAGAGTACTCAAAGGGATACATTGAGAAAG 1020
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 ACCCTCCAAAATACAGAAACTTCACTGTACCAGAGTACTCAAAGGGATACATTGAGAAAG 1020
Query 1021 GTCTCGATGGAACATCGCATCTGTCACATTACAGGATTTGAGAT 1064
|| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 GTTTAGATGGAACATCGCATCTGTCACATTACAGGATATGAGAT 1064
> Ahg470412 jgi|Araly1|470412|fgenesh2_kg.1__366__AT1G04350.1
Length=1324
Score = 852 bits (461), Expect = 0.0
Identities = 785/939 (84%), Gaps = 32/939 (3%)
Strand=Plus/Plus
Query 142 CCTCGGATTTTGCAG-TACCTATCATCGACTTTGCAGGCGTCCACAAGTCGCGTGAAGCC 200
||||||||||||| | | |||||||||||||||| |||| ||||| ||||||||||
Sbjct 252 CCTCGGATTTTGC-GATCCCTATCATCGACTTTGAAGGCCTCCACGTCTCGCGTGAAGAT 310
Query 201 GTTGTGGAGAAGATCAAAGCCGCTGCAGAGAATTGGGGAATTTTCCAGGTGATCAACCAT 260
| || |||||||||||| ||||||| |||||||| ||||||||||||| || |||
Sbjct 311 ATCGTCAAGAAGATCAAAGACGCTGCATCCAATTGGGGGTTTTTCCAGGTGATTAATCAT 370
Query 261 GGTGTTCCTTTAAGTGTTCTTGAAGAGATTCAA-AATGGAGTT-GTTAGGTTTCATGAGG 318
||||||||||||| |||||||||||||||||| || |||||| | |||||||||||| |
Sbjct 371 GGTGTTCCTTTAAACGTTCTTGAAGAGATTCAAGAA-GGAGTTCG-TAGGTTTCATGAAG 428
Query 319 AAGATCCGGAGGTTAAGA-AATCTTACTTCTCGCTTGA-CCTCACCAAAACATTTATCTA 376
||||||| |||||||||| || |||||||| | | ||| | | | |||| |||| ||||
Sbjct 429 AAGATCCTGAGGTTAAGATAA-CTTACTTCACCCGTGATGC-CGCTAAAAGATTTGTCTA 486
Query 377 CCACAATAATTTCGAACTTTACAGTTCGTCTGC-TG-G-TAACTGGAGAGACTCTTTCGT 433
| | | ||| ||||| || ||||| || ||| | || | ||||||||||||||| ||||
Sbjct 487 CAATAGTAACTTCGATCTCTACAGGTCTTCTTCATGTGTTAACTGGAGAGACTCGTTCGC 546
Query 434 TTGTTACATGGATCCCGATCCTTCAAACCCTGAAGATCTCCCAGTGGCTTGCAGAGATGC 493
||||||||||| ||| |||||| |||||||||| || ||||||||||||||||| |||||
Sbjct 547 TTGTTACATGGCTCCTGATCCTCCAAACCCTGAGGAACTCCCAGTGGCTTGCAGGGATGC 606
Query 494 TATGATCGGATACTCGAAGCATGTGATGAGTTTAGGTGGCTTGCTCTTTGAACTTCTCTC 553
|||| ||| |||||| |||||| ||||||| ||||||| ||||||||||| ||||||||
Sbjct 607 TATGTTCGAATACTCAAAGCATATGATGAGATTAGGTGATTTGCTCTTTGAGCTTCTCTC 666
Query 554 AGAAGCTCTTGGTTTGA-ACTCTGATACTCTTAAGAGTATGGGTTGCATGAAGGGTTTGC 612
||||||||||||||||| | ||||||| |||||||| |||| |||||||||||||||||
Sbjct 667 AGAAGCTCTTGGTTTGAGA-TCTGATAAGCTTAAGAGCATGGATTGCATGAAGGGTTTGC 725
Query 613 ATATGATCTGCCATTATTACCCTCCCTGTCCACAACCTGACCAAACCT-TAGGCACAAGT 671
| || ||||||||||||| ||||| |||||||||||||| | ||| | | ||||||| |
Sbjct 726 TTTTGCTCTGCCATTATTATCCTCCATGTCCACAACCTGATCTAAC-TATCGGCACAAAT 784
Query 672 AAGCATTCCGACAACACTTTTATCACTATTCTTCTTCAGGAC-AACATCGGTGGTCTTCA 730
|| ||||| ||||| | || |||| ||||||||||||||| || ||||||||||||||
Sbjct 785 AATCATTCAGACAATTCCTTCCTCACAATTCTTCTTCAGGACCAA-ATCGGTGGTCTTCA 843
Query 731 AATTCTTCATCAAGACTGTTGGGTTGATGTCTCGCCTCTTCCCGGGGCACTTA-TCATCA 789
||||| |||||| ||||||||||| |||||||| ||| |||| ||||| || | ||||||
Sbjct 844 AATTCATCATCAGGACTGTTGGGTCGATGTCTCTCCTATTCCAGGGGCTCT-AGTCATCA 902
Query 790 ACATCGGAGATTTCTTGCAGCTAATGACGAACGACAAGTTCATAAGCGTTGATCATAGGG 849
|||| |||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct 903 ACATGGGAGATTTCTTGCAGCTAATAACGAATGACAAGTTCATAAGTGTGGAGCATAGGG 962
Query 850 TGCTTA-CAAACAG---AGTTGGACCGAGGATTTCAATCGC-ATGCTTTTTCAGCTCGAG 904
|||| | | ||||| || | ||||||||| ||| | || | ||||||||||| | ||
Sbjct 963 TGCT-AGCGAACAGGGCAGCTACACCGAGGATATCAGTAGCGA-GCTTTTTCAGCACAAG 1020
Query 905 TATGAATCCAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCC 964
|||| ||| ||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1021 TATGCTTCCGAATTCAACTGTTTACGGACCAATCAAGGAGATTCTCTCTGAAGAAAACCC 1080
Query 965 TCCAAAATACAGAGACTTC-ACTATACCAGAGTACTCAAAGGGATACATTGA-GAAAGGT 1022
|||||||||||||| | || ||| || ||| ||| || |||| ||| | | ||||||
Sbjct 1081 TCCAAAATACAGAGTCATCGACT-TAAAAGAATACACAGAGGGGTAC-TACAAGAAAGGC 1138
Query 1023 CTCGATGGAACATCGCATCTGTCACATTACAGGATTTGA 1061
||||||||||||||| ||||||| ||||||| ||| |||
Sbjct 1139 CTCGATGGAACATCGTATCTGTCGCATTACAAGATATGA 1177
> Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447
Length=1095
Score = 712 bits (385), Expect = 0.0
Identities = 708/859 (82%), Gaps = 41/859 (5%)
Strand=Plus/Plus
Query 228 GAGAATTGGGGAATT-TTCCAGGTGATCAACCATGGTGTTCCTTTAAGTGTTCTTGAAGA 286
||||||||||| || |||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 253 GAGAATTGGGG-GTTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAACGTTCTTGAGGA 311
Query 287 GATTCAAA-AT-GGAGTTGTTAGGTTTCATGA-G--GAAGATCCGGAGGTTAAGAAATCT 341
|||| ||| || ||| | | ||| ||||| || | |||||||| ||||| ||||||||
Sbjct 312 GATT-AAAGATGGGACTCG-TAGATTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATCA 369
Query 342 TACTTCTCGCTTGACCTCACCA--AA-ACATTTATCTACCA-CAATAATTTCGAACTTTA 397
|||| ||||||||| |||||| || | |||| ||| || | ||||||||| || ||
Sbjct 370 TACTACTCGCTTGATTTCACCACGAACAAATTTGCCTA-CAGTAGTAATTTCGATCTATA 428
Query 398 CAGTTCGT--CTG-CTGGTAACTGGAGAGACTCTTTCGT-TTGTTACATGGATCCCGATC 453
||||| | | | ||| ||| |||||||| ||| || | ||||||||||| ||| ||||
Sbjct 429 TAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATC-TCTTGTTACATGGCTCCTGATC 487
Query 454 CTTCAAAC-CCTGAAGATCTCCCAGTGGCTTGCAGAGATGCTATGATCGGATACTCGAAG 512
| || ||| ||||| || ||||||| | ||||||| ||||||||||| | |||||| |||
Sbjct 488 C-TCCAACTCCTGAGGAACTCCCAGAGACTTGCAGGGATGCTATGATTGAATACTCAAAG 546
Query 513 CATGTGATGAGTTTAGGTGGCTTGCTCTTTGAACTTCTCTCAGAAGCTCTTGGTTTGAAC 572
|||||| |||||||||||| |||||||||| |||||||||||||| || ||||||||
Sbjct 547 CATGTGTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAGAAGCACTAGGTTTGAAA 606
Query 573 TCTGATACT-CTTAAGAGTATGGGTTGCATGAAGGGTTTGCATATGATCTGCCATTATTA 631
||||| | | |||||||| ||||||||| ||||| |||||| ||||||||| ||||||||
Sbjct 607 TCTGAGA-TCCTTAAGAGCATGGGTTGCTTGAAGAGTTTGCTTATGATCTGTCATTATTA 665
Query 632 CCCTCCCTGTCCACAACCTGACCAAACCTTAGGCACAAGTAAGCATTCCGACAACACTTT 691
||| || |||||||||||||||| ||| ||||| | || ||| ||||| |||||| ||||
Sbjct 666 CCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAACATTCAGACAACTCTTT 725
Query 692 TATCACTATTCTTCTTCAGGACAACATCGGTGGTCTTCAAATTCTTCATCAAGACTGTTG 751
|||| |||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 726 CCTCACGGTTCTTCTTCAAGACAACATTGGTGGTCTTCAAATTCTTCATCAAGACTCTTG 785
Query 752 GGTTGATGTCTCGCCTCTTCCCGGGGCACTTATCA-TCAACATCGGAGATTTCTTGCAGC 810
|||||||||||| |||||||| || || || | | ||||||||||||||||||||||||
Sbjct 786 GGTTGATGTCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACATCGGAGATTTCTTGCAGC 844
Query 811 TAATGACGAACGACAAGTTCATAAGCGTTGATCATAGGGTGCTTAC-AA-ACAGAGTTGG 868
| || || ||||| ||||| |||| || || |||||||||||| | || ||| | ||
Sbjct 845 TGATAACCAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCTTGCGAATACA-CG-AGG 902
Query 869 ACCGAGGATTTCAATCGC-ATGCTTTTTCAGCTCGAGTATGA-ATCCA-AATTCCACAGT 925
||| ||||||||| | || | ||||||||||||| ||||| | | | ||||| |||||
Sbjct 903 ACCAAGGATTTCAGTAGCGA-GCTTTTTCAGCTCAAGTAT-ACGT-GAGAATTCAACAGT 959
Query 926 TTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCCTCCAAAATACAGAGACTTCA- 984
||| |||||||| ||||||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 960 TTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGA-TACAA 1018
Query 985 CTATACCAGAGTACTCA-AAGGGATACATTGAGAAAGGTCTCGATGGAACATCGCATCTG 1043
|| || ||| |||||| |||| |||| || |||||||||| ||||||||||||||||||
Sbjct 1019 CTTTAAGAGAATACTCAGAAGG-ATACTTTAAGAAAGGTCTTGATGGAACATCGCATCTG 1077
Query 1044 TC-ACATTACAGGATTTGA 1061
|| | ||| |||||| |||
Sbjct 1078 TCGA-ATTTCAGGATATGA 1095
> Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1
Length=1223
Score = 706 bits (382), Expect = 0.0
Identities = 745/917 (81%), Gaps = 37/917 (4%)
Strand=Plus/Plus
Query 159 CCTATCATCGACTTTGCAGGCGT-C-C----ACA-A--GTCGCGTGAAGCCGTTGTGGAG 209
||||||||||| |||||| |||| | | ||| | ||| ||||||||||| || |||
Sbjct 182 CCTATCATCGATTTTGCAAGCGTCCACGTGGACACAGCGTCACGTGAAGCCGTCGTAGAG 241
Query 210 -AAGATCAAAGCCGCTGCAGAGAATTGGGGAATT-TTCCAGGTGATCAACCATGGTGTTC 267
||| ||||| || | ||||||||||| ||| |||||||||||||| |||||| |||
Sbjct 242 AAAG-TCAAATATGCGGTGGAGAATTGGGG-ATTCTTCCAGGTGATCAATCATGGTATTC 299
Query 268 CTTTAAGTGTTCTTGAAGAGATTCAAA-ATGGAGTT-GTTAGGTTTCATGAGGAAGATCC 325
|||||| ||||||||||||||| ||| ||| |||| | |||||||||||||||||||||
Sbjct 300 CTTTAAACGTTCTTGAAGAGATT-AAAGATGCAGTTCG-TAGGTTTCATGAGGAAGATCC 357
Query 326 GGAGGTTAAGAAATCT-TACTTCTCGC-T--TGAC-CTCACCAAAACATTTATCTACCAC 380
||||| ||||||| | |||||||||| | |||| | || |||| |||| | || ||
Sbjct 358 TGAGGTCAAGAAAT-TATACTTCTCGCGTGATGACGC-CAATAAAAAATTTGTGTATAAC 415
Query 381 AATAA-TTTCGAACTTTACAGTTCGT--CTG-CTGGTAACTGGAGAGACTCTTTCGT-TT 435
| ||| ||| || || ||| |||| | | | ||| ||| |||||||| |||||| | ||
Sbjct 416 AGTAACTTT-GATCTATACGGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTC-TCTT 473
Query 436 GTTACATGGATCCCGATCCTTCAAAC-CCTGAAGATCTCCCAGTGGCTTGCAGAGATGCT 494
||||||| | ||| ||||| || | | ||||| || |||| | | ||||||| ||||||
Sbjct 474 GTTACATAGCTCCAGATCC-TCCAGCTCCTGAGGAGATCCCTGAGACTTGCAGGGATGCT 532
Query 495 ATGATCGGATACTCGAAGCATGTGATGAGTTTAGGTGGCTTGCTCTTTGAACTTCTCTCA 554
||| | | |||||||||||||||| ||||||||||||| || || ||||| |||||||||
Sbjct 533 ATGTTTGAATACTCGAAGCATGTGTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCA 592
Query 555 GAAGCTCTTGGTTTGAACTCTGATACTCTTAAGAGTATGGGTTGCATGAAGGGTTTGCAT 614
|||||||| |||||||| || || || |||||||| |||| |||| ||||| ||||| |
Sbjct 593 GAAGCTCTAGGTTTGAAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTT 652
Query 615 ATGATCTGCCATTATTACCCTCCCTGTCCACAACCTGACCAAACCTTAGGCACAAGTAAG 674
|||||||||||||||||||| || |||||||||||||||| ||| ||||| | || |||
Sbjct 653 ATGATCTGCCATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGGATAACTAAA 712
Query 675 CATTCCGACAACACTTTTATCACTATTCTTCTTCAGGACAACATCGGTGGTCTTCAAATT 734
|| || || ||| | || |||| ||||||| || |||||||| |||||||||||||||
Sbjct 713 CACTCAGATAACTCCTTCCTCACGCTTCTTCTCCAAGACAACATTGGTGGTCTTCAAATT 772
Query 735 CTTCATCAAGACTGTTGGGTTGATGTCTCGCCTCTTCC-CGGGGCACTTATCATCAACAT 793
|||||||||||| |||||| |||||||| | || ||| || || || || |||||||
Sbjct 773 ATTCATCAAGACTCTTGGGTCGATGTCTCTCATC-TCCATGGAGCTCTCGTCGTCAACAT 831
Query 794 CGGAGATTTCTTGCAGCTAATGACGAACGACAAGTTCATAAGCGTTGATCATAGGGTGCT 853
||||||||||||||||| || |||||||| ||||| |||| || || |||||||||||
Sbjct 832 TGGAGATTTCTTGCAGCTGATAACGAACGATAAGTTTGTAAGTGTGGAGCATAGGGTGCT 891
Query 854 TACAAACAGAGTTGGACCGAGGATTTCAATCGCAT-GCTTTTTCAGCTCGAGTATGAATC 912
| |||| ||| ||||| ||||||||| | || | ||||||||||||| |||||| ||
Sbjct 892 TGCAAATAGACAAGGACCAAGGATTTCAGTAGC-TAGCTTTTTCAGCTCAAGTATGCGTC 950
Query 913 CAAATTCCACAGTTTACGGACCAATCAAAGAGCTTCTCTCTGAAGAAAACCCTCCAAAAT 972
||||||||| |||||||||||| || ||||||||| | ||||||||||||||||||||||
Sbjct 951 CAAATTCCAGAGTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAAT 1010
Query 973 ACAGAGACTTCACTATACCAGAGTACTCAAAGGGATACATTGAGAAAGGTCTCGATGGAA 1032
|||||||| | || ||| |||||| ||||| || |||||||||||||||||||||
Sbjct 1011 ACAGAGACATAACCATAAAAGAGTATTCAAAAATATTTTTTGAGAAAGGTCTCGATGGAA 1070
Query 1033 CATCGCATCTGTCACAT 1049
|||||||||| || |||
Sbjct 1071 CATCGCATCTATCGCAT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5