BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04410.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470418 jgi|Araly1|470418|fgenesh2_kg.1__372__AT1G04410.1 1993 0.0
Ahg494670 jgi|Araly1|494670|fgenesh2_kg.8__486__AT5G43330.1 1199 0.0
> Ahg470418 jgi|Araly1|470418|fgenesh2_kg.1__372__AT1G04410.1
Length=1432
Score = 1993 bits (1079), Expect = 0.0
Identities = 1246/1324 (94%), Gaps = 22/1324 (2%)
Strand=Plus/Plus
Query 11 TACATCCTTCGATA---TCTTCGATAAATACGC-----AAGAGTGAGCTTCACGGTCAGA 62
|||||||||||||| |||||||||||||| | ||||||||||||||||| || |
Sbjct 1 TACATCCTTCGATATCTTCTTCGATAAATACACAAAAAAAGAGTGAGCTTCACGGACACA 60
Query 63 -CAAA--AGCTGACTCTACGCTCTCTCAAAAGTCGAATATCCCAAATTCGATCCGTTTTC 119
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CCAAAGCAGCTGACTCTACGCTCTCTCAAAAGTCGAATATCCCAACTTCGATCCGTTTTC 120
Query 120 CGGCGATAATCTCCGATCTAGATCCGATGGCGAAAGAACCAGTTCGTGTGCTCGTTACTG 179
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 121 CGGCGATAATCTCCGATCTTGATCCGATGGCCAAAGAACCAGTTCGTGTACTCGTCACTG 180
Query 180 GAGCTGCAGGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGCTTG 239
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 181 GAGCTGCAGGGCAAATCGGATATGCTCTTGTCCCTATGATTGCCAGGGGTATCATGCTTG 240
Query 240 GTGCTGACCAACCTGTTATCCTCCACATGTTGGATATTCCTCCAGCTGCTGAAGCTTTGA 299
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GTGCTGACCAACCTGTTATTCTCCACATGTTGGATATTCCTCCTGCTGCTGAAGCTTTGA 300
Query 300 ACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTTGCTA 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 ACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTCAAAGGTGTTGTTGCTA 360
Query 360 CAACTGATGCCGTTGAGGGATGTACTGGAGTCAATGTTGCTGTTATGGTTGGTGGTTTCC 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CAACTGATGCCGTTGAGGGATGTACTGGAGTCAACGTTGCTGTTATGGTTGGTGGTTTCC 420
Query 420 CGAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGT 479
||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 CGAGGAAGGAAGGAATGGAGAGGAAGGATGTGATGTCCAAGAATGTCTCTATCTACAAGT 480
Query 480 CTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGGTTCTTGTTGTGGCCA 539
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 481 CTCAGGCTGCTGCATTGGAGAAACATGCCGCTCCAAACTGCAAGGTTCTTGTTGTGGCTA 540
Query 540 ACCCGGCAAACACCAACGCATTGATCCTCAAGGAATTTGCACCATCAATCCCTGAAAAGA 599
|||| || || ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 541 ACCCCGCGAATACCAACGCATTGATCCTCAAGGAATTTGCGCCATCCATCCCTGAAAAGA 600
Query 600 ACATCTCTTGTTTGACAAGGCTTGACCACAACAGGGCTTTGGGACAGATCTCTGAGAGGT 659
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 601 ACATCTCTTGTTTGACAAGGCTTGACCACAACAGGGCATTGGGCCAGATCTCTGAGAGGT 660
Query 660 TGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCATCCTCAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCATCCTCAC 720
Query 720 AGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCGTCTGGAGAGAAGCCTGTCCGTG 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 AGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCATCTGGAGAGAAGCCTGTCCGTG 780
Query 780 AGCTCGTCAAGGACGATGCATGGTTGGACGGAGAATTTATCTCTACAGTTCAACAACGTG 839
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 781 AGCTCGTCAAGGACGATGCATGGTTGGACGGGGAATTCATCTCTACAGTTCAACAACGTG 840
Query 840 GAGCTGCAATCATCAAGGCGAGGAAGTTGTCTAGTGCGCTCTCTGCTGCTAGCTCTGCTT 899
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 841 GAGCTGCAATCATCAAGGCGAGAAAGTTGTCTAGTGCACTTTCTGCTGCTAGCTCTGCTT 900
Query 900 GTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTCGTTTCCATGGGAG 959
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTTGTTTCCATGGGAG 960
Query 960 TATACTCCGATGGCTCTTACAGCGTTCCATCAGGACTTATCTACTCCTTCCCTGTAACTT 1019
| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 961 TGTACTCCGATGGCTCTTACAACGTTCCGTCAGGACTTATCTACTCCTTCCCTGTAACTT 1020
Query 1020 GTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTTCCGATTGATGAAGTATCAAGGAAGA 1079
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTCGCAATGGAGAGTGGAGTATTGTCCAAGGCCTTCCGATTGATGAAGTATCAAGGAAGA 1080
Query 1080 AGATGGATTTGACTGCAGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTCATGCCTCT 1139
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATGGATTTGACAGCGGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTCATGCCTCT 1140
Query 1140 CTTAAACCCTTCTGGAGCAAAATTTTCATCTATAAGGTGTGAGATCAGTTAAAGCCTTTC 1199
||||||||||| || |||||| |||||| ||||||||||||||| || |||||| ||||
Sbjct 1141 CTTAAACCCTTGTGAAGCAAA-TTTTCACCTATAAGGTGTGAGACCATTTAAAGT-TTTC 1198
Query 1200 AGGGCTTTGTCCGAATAAGAAGTGTGTTTGAAAG-ATCTCCAAACACTGTTTTATAACCT 1258
||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||| |||||||
Sbjct 1199 AGGGCTTTGTCGGAATAAGAAGTTTGTTT-AAAGTATCTCAAAACACTGTTTAATAACCT 1257
Query 1259 CTTTG-G---TC-TCT--TTGATGAGTATTGTCCCTGGTCTGTTTCTAAACCAGGATATC 1311
||||| | | ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1258 CTTTGTGGGGTTGTCTCGTTAATGAGCATTGTCCCTGGTCTGTTTCTAAACCAGGATATC 1317
Query 1312 Gttt 1315
||||
Sbjct 1318 GTTT 1321
> Ahg494670 jgi|Araly1|494670|fgenesh2_kg.8__486__AT5G43330.1
Length=1259
Score = 1199 bits (649), Expect = 0.0
Identities = 909/1036 (88%), Gaps = 12/1036 (1%)
Strand=Plus/Plus
Query 119 CCGGCGATAA-TCTCCGATCTAGA-TCCGATGGCGAAAGAACCAGTTCGTGTGCTCGTTA 176
|||||||||| | |||||||| || | ||||||||| |||||||| ||||| || ||||
Sbjct 66 CCGGCGATAATTTTCCGATCTCGATTAAGATGGCGAAGGAACCAGTCCGTGTTCTTGTTA 125
Query 177 CTGGAGCTGCAGGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGC 236
| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 126 CCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGC 185
Query 237 TTGGTGCTGACCAACCTGTTATCCTCCACATG-TTGGATATTCCTCCAGCTGCTGAAGCT 295
||||||| ||||| ||||| |||||||||||| || ||||| ||||| || || ||||||
Sbjct 186 TTGGTGCAGACCAGCCTGTGATCCTCCACATGCTT-GATATCCCTCCGGCAGCAGAAGCT 244
Query 296 TTGAACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTT 355
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 245 TTGAACGGTGTGAAAATGGAGTTGATCGATGCTGCTTTCCCTCTTCTGAAAGGTGTGGTG 304
Query 356 GCTACAACTGATGCCGTTGAGGGATGTACTGGAGTCAATGTTGCTGTTATGGTTGGTGGT 415
|||||||||||||||||||| |||||||| || || ||||||||||| |||||||| |||
Sbjct 305 GCTACAACTGATGCCGTTGAAGGATGTACCGGTGTTAATGTTGCTGTCATGGTTGGCGGT 364
Query 416 TTCCCGAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTAC 475
||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct 365 TTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTTATGTCGAAGAACGTTTCCATTTAC 424
Query 476 AAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGGTTCTTGTTGTG 535
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 425 AAGTCTCAAGCTGCTGCCTTGGAGAAGCATGCCGCACCAAACTGCAAGGTTCTGGTTGTT 484
Query 536 GCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAATTTGCACCATCAATCCCTGAA 595
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 485 GCAAACCCTGCAAACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAG 544
Query 596 AAGAACATCT-CTTGTTTGACAAGGCTTGACCACAACAGGGCTTTGGGACA-GATCTCTG 653
|||||||| | |||| ||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 545 AAGAACAT-TACTTGCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAG-TCTCTG 602
Query 654 AGAGGTTGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCAT 713
||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 603 AGAGGTTAAGCGTACCAGTGTCTGATGTCAAGAACGTGATTATCTGGGGAAACCACTCAT 662
Query 714 CCTCACAGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCGTCTGGAGAGAAGCCTG 773
| | || |||||||||||||||||||||| || |||| || |||||||||||||| |
Sbjct 663 CAACCCAATACCCAGATGTCAACCATGCTACCGTTAAGACTTCCTCTGGAGAGAAGCCAG 722
Query 774 TCCGTGAGCTCGTCAAGGACGATGCA-TGGTTGGACGGAGAATTTATCTCTACAGTTCAA 832
| |||||||| |||||| | || | | |||||| | ||||| || |||||||| ||||||
Sbjct 723 TGCGTGAGCTAGTCAAGAATGACG-AGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAA 781
Query 833 CAACGTGGAGCTGCAATCATCAAGGCGAGGAAGTTGTCTAGTGCGCTCTCTGCTGCTAGC 892
|||||||||||||| || |||||||| ||||| |||||||||| |||||||| ||||||
Sbjct 782 CAACGTGGAGCTGCCATTATCAAGGCCAGGAAACTGTCTAGTGCACTCTCTGCAGCTAGC 841
Query 893 TCTGCTTGTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTCGTTTCC 952
|||||||||||||| |||||||| |||||| ||||||| || ||||| || || |||||
Sbjct 842 TCTGCTTGTGACCATATCCGTGATTGGGTCGTTGGAACACCCGAGGGCACATTTGTTTCA 901
Query 953 ATGGGAGTATACTCCGATGGCTCTTACAGCGTTCCATCAGGACTTATCTACTCCTTCCCT 1012
|||||||||||||| ||||| || |||| |||||| | |||||||||||||| |||||
Sbjct 902 ATGGGAGTATACTCAGATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCTTTCCCC 961
Query 1013 GTAACTTGTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTT-CCGATTGATGAAGTATC 1071
||||| || || |||||||| |||| |||||| ||||| || ||||| |||||||||||
Sbjct 962 GTAACCTGCCGTAATGGAGAGTGGACTATTGTTCAAGGT-TTACCGATCGATGAAGTATC 1020
Query 1072 AAGGAAGAAGATGGATTTGACTGCAGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTC 1131
||||||||||||||||||||| ||||||||| | ||||||||||||||| | || |||||
Sbjct 1021 AAGGAAGAAGATGGATTTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTC 1080
Query 1132 ATGCCTCTCTTAAACC 1147
||||||||||||||||
Sbjct 1081 ATGCCTCTCTTAAACC 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5