BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04420.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919118 jgi|Araly1|919118|scaffold_100399.1 2074 0.0
> Ahg919118 jgi|Araly1|919118|scaffold_100399.1
Length=1279
Score = 2074 bits (1123), Expect = 0.0
Identities = 1227/1279 (96%), Gaps = 0/1279 (0%)
Strand=Plus/Plus
Query 7 CGTCCACGACAACCTCCGGTATGGCGTCATCTTACGTCACCTACTCAACGGTCACTCCGG 66
|||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CGTCCAAGACATTCTCCGGGATGGCGTCATCTTACGTCACCTTCTCAACGGTCACTCCGG 60
Query 67 TGGTCAGCAGCAGTAACATTCGAGGAGTCTTTCGTTTGGCATTCACGCGCCGCCGTGTTA 126
|||||||| |||| ||| |||||| | ||| |||| |||||||||||||||||| |
Sbjct 61 TGGTCAGCGGCAGCGACACTCGAGGCTTAGCTCGCTTGGAATTCACGCGCCGCCGTGTAA 120
Query 127 CTCTATCGCCGAATGCTCGGAGGAGAATATTGAGAGTTTCGGCGAAAGCGTCGACGAAGA 186
||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 CTCCATCGCCGAATTCTCGGAGGAGACTATTGAGAATTTCGGCGAAAGCGTCGACGAAGA 180
Query 187 ATGCTATGGAGTATAGGAAATTAGGAGATTCCGATCTCAACATCAGCGAAGTTACTATGG 246
|||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 181 ATGCAATGGAGTACAGGAAATTAGGAGATTCCGATCTTAACATCAGTGAAGTTACTATGG 240
Query 247 GCACTATGACATTTGGGGAGCAAAATACTGAGAAAGAATCTCATGAGATGCTGAGTTATG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCACTATGACATTTGGGGAGCAAAATACTGAGAAAGAATCTCATGAGATGCTGAGTTATG 300
Query 307 CAATTGAAGAGGGCATCAATTGCATTGACACTGCTGAAGCTTATCCCATACCGATGAAGA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAATTGAAGAGGGCATCAATTGCATTGACACTGCTGAAGCTTATCCCATACCGATGAAGA 360
Query 367 AGGAGACGCAAGGTAAAACGGATCTTTATATCAGTAGCTGGTTGAAGTCTCAGCAACGTG 426
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAGACCCAAGGAAAAACGGATCTTTATATCAGTAGCTGGTTGAAGTCTCAGCAACGTG 420
Query 427 ACAAGATAGTTTTGGCAACTAAAGTATGTGGGTACTCAGAAAGGTCAGCTTACATAAGGG 486
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 421 ACAAGATAGTTTTGGCAACTAAAGTATGTGGGTACTCAGAAAGATCATCTTACATAAGGG 480
Query 487 ACAGTGGTGAGATTCTGCGTGTAGATGCTGCTAATATCAAAGAAAGTGTTGAGAAAAGTC 546
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAGTGGTGAGGTTCTGCGTGTAGATGCTGCTAATATCAAAGAAAGTGTTGAGAAAAGTC 540
Query 547 TTAAGCGCCTTGGAACTGATTACATTGACTTGCTTCAAATACACTGGCCAGATCGATACG 606
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 TTAAGCGCCTTGGAACTGATTACATTGATTTGCTTCAAATACACTGGCCAGATCGATACG 600
Query 607 TACCACTCTTCGGTGATTTTTACTATGAAACGTCGAAATGGAGACCTAGTGTGCCATTCG 666
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 601 TACCACTCTTCGGTGATTTTTACTATGACACATCGAAATGGAGACCTAGTGTGCCATTCG 660
Query 667 CTGAGCAACTAAGAGCCTTTCAGGATCTCATAGTTGAAGGAAAGGTTCGCTATATCGGTG 726
|||||||||||||||||||| |||||||||||| ||||||||||||||| || || ||||
Sbjct 661 CTGAGCAACTAAGAGCCTTTAAGGATCTCATAGATGAAGGAAAGGTTCGGTACATTGGTG 720
Query 727 TCTCGAATGAAACTTCATACGGAGTGACGGAGTTTGTTAACACAGCAAAACTCGAAGGAC 786
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 TCTCGAATGAAACTTCATATGGAGTGATGGAGTTTGTTAACACAGCAAAACTCGAAGGAC 780
Query 787 TACCAAAGATTGTGAGCATCCAGAATGGTTACAGCTTGCTAGTTAGATGTCGGTATGAAG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACCAAAGATTGTGAGCATCCAGAATGGTTACAGCTTGCTAGTTAGATGTCGGTATGAAG 840
Query 847 TTGATCTGGTAGAAGTATGCCACCCAAAAAATTGCAATGTTGGCTTGCTTGCTTATTCCC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGATCTGGTAGAAGTATGCCACCCAAAAAATTGCAATGTTGGCTTGCTTGCTTATTCCC 900
Query 907 CTCTTGGAGGCGGCTCGTTGTCTGGGAAATACTTGGCTACAGACCAAGAAGCTACAAAAA 966
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 CTCTTGGAGGCGGCTCGTTGTCTGGGAAATACTTGGTTACAGACCAAGAAGCTACAAAAA 960
Query 967 ATGCAAGGCTGAATCTTTTCCCAGGATATATGGAACGTTACAAGGGATCACTAGCCAAGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 ATGCAAGGCTGAATCTTTTCCCAGGATATATGGAACGTTACAAGGGATCCCTAGCCAAGG 1020
Query 1027 AAGCAACCATACAATACGTTGAGGTGGCGAAGAAGTACGGTTTAACTCCGGTTGAGTTAG 1086
||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 AAGCAACGATACAATACGTGGAGGTGGCGAAGAAGCACGGTTTAACTCCGGTTGAGTTAG 1080
Query 1087 CACTCGGGTTTGTACGTGACAGGCCCTTTGTGACGAGCACGATCATCGGGGCCACATCGG 1146
|||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 1081 CACTTGGGTTTGTACGTGACCGGCCCTTTGTGACAAGCACGATCATTGGGGCCACATCGG 1140
Query 1147 TAAAACAACTTAAAGAAGACATTGATGCTTTTCTGATGACGGAGCGGCCGTTTTCGCAGG 1206
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TAGAGCAACTTAAAGAAGACATTGATGCTTTTCTGATGACGGAGCGGCCGTTTTCGCAGG 1200
Query 1207 AAGTTATGGCAGACATTGACGCCGTTTTCAAGAGGTTCAAAGACCCTTCTTTCGTTTGAA 1266
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 AAGTTATGGCAGACATTGACGCCGTTTTCAAAAGGTTCAAAGACCCTTCTTTCGTTTGAA 1260
Query 1267 AGAAAAGAAGGTTTCTCAT 1285
|||||||||||||||||||
Sbjct 1261 AGAAAAGAAGGTTTCTCAT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5