BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04430.1
Length=2379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470420 jgi|Araly1|470420|fgenesh2_kg.1__374__AT1G04430.1 3223 0.0
Ahg479845 jgi|Araly1|479845|fgenesh2_kg.3__2546__AT3G23300.1 917 0.0
Ahg946901 jgi|Araly1|946901|scaffold_703130.1 145 2e-33
Ahg938044 jgi|Araly1|938044|scaffold_502235.1 143 6e-33
Ahg945620 jgi|Araly1|945620|scaffold_701849.1 139 8e-32
Ahg934328 jgi|Araly1|934328|scaffold_402316.1 139 8e-32
Ahg947727 jgi|Araly1|947727|scaffold_703956.1 134 4e-30
Ahg946665 jgi|Araly1|946665|scaffold_702894.1 134 4e-30
Ahg951833 jgi|Araly1|951833|scaffold_20300002.1 75.0 2e-12
Ahg938582 jgi|Araly1|938582|scaffold_502773.1 75.0 2e-12
Ahg924085 jgi|Araly1|924085|scaffold_105366.1 75.0 2e-12
Ahg920492 jgi|Araly1|920492|scaffold_101773.1 69.4 1e-10
> Ahg470420 jgi|Araly1|470420|fgenesh2_kg.1__374__AT1G04430.1
Length=2099
Score = 3223 bits (1745), Expect = 0.0
Identities = 1917/2001 (96%), Gaps = 7/2001 (0%)
Strand=Plus/Plus
Query 160 TCTCGGATCTCTCTCAGTGCACAGTGGTTGTCACTCTTCTCCTTTG---GTCGAAACTCT 216
||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||||
Sbjct 101 TCTCGGATCTCTCTCAGTGGACAGTGGTTGTGACTCTTCTTCTTTGACTGTAGAAACTCT 160
Query 217 TTCTTGGAAAGAGCATTTTGTTATCAAGACTCTGAAGAGCTCTTTTGGGAGGATAGTAAG 276
|||| ||| |||||||| | ||| ||||||||||||||||||||||||||||||| || |
Sbjct 161 TTCTGGGAGAGAGCATTCTATTAACAAGACTCTGAAGAGCTCTTTTGGGAGGATATTACG 220
Query 277 GTTGGATGATGAGAGGGAGATCTGATGGAGGCCTAAAGAAGCGGCTTATTGCTTCGGTCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 221 GTTGGATGATGAGAGGGAGATCTGATGGAGGCCTAAAGAAGCGGCTTATTGCTTCTGTCT 280
Query 337 GTGTCGTGGCTCTATTCGTCTGTTTCTTGTTTATGTACTATGGTTCCTCTAGCCAAGGTG 396
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 281 GTGTCGTGGCTTTATTCGTCTGTTTCTTGTTCATGTACTATGGTTCCTCTAGCCAAGGTG 340
Query 397 CATCAGCATTGGAATATGGAAGATCTTTGAGAAAACTCGGATCGTCTTATTTGAGTGGAG 456
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 341 CATCAGCATTGGAATATGGAAGATCTTTGAGAAAACTCGGATCTTCTTATTTGGGTGGAG 400
Query 457 ATGATGATAATGGTGATACCAAACAGGATGATTCTGTGGCTAATGCAGAAGACAGTCTTG 516
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 401 ATGATGATAATGGTGATACCAAACAGGATGATTCTGTCACCAATGCAGAAGACAGTCTTG 460
Query 517 TTGTCGCCAAAAGTTTTCCTGTTTGTGATGACCGGCACTCGGAAATCATCCCTTGCTTAG 576
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 461 TTGTGGCCAAAAGTTTTCCTGTTTGTGATGATCGGCACTCGGAAATCATCCCTTGCTTAG 520
Query 577 ATAGGAATTTCATCTACCAAATGAGGTTGAAGCTTGATCTCTCTTTAATGGAACATTATG 636
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 521 ATAGGAATTTCATCTACCAAATGAGGTTGAAGCTTGATCTATCTCTAATGGAACATTATG 580
Query 637 AACGGCATTGTCCTCCTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCATCTGGAT 696
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 581 AACGGCATTGTCCTCCTCCCGAAAGACGGTTTAACTGTTTGATTCCTCCACCATCTGGCT 640
Query 697 ACAAGGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTC 756
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 ACAAGGTTCCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCCAACATACCTC 700
Query 757 ACACTCACCTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTGAGAAAGGCGAGAAAA 816
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 701 ACACTCACCTCGCAAAAGAGAAGTCTGATCAGAATTGGATGGTTGAGAAAGGCGAGAAAA 760
Query 817 TTTCTTTTCCCGGTGGAGGCACTCATTTCCATTACGGTGCTGATAAATACATTGCATCGA 876
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 761 TTTCTTTTCCAGGTGGAGGCACTCATTTCCATTACGGAGCTGATAAATACATTGCATCAA 820
Query 877 TCGCAAATATGCTTAACTTTTCGAACGATGTATTGAATGACGAAGGGAGATTAAGAACGG 936
|||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 821 TCGCAAATATGCTTAATTTTTCGAACGATGTACTGAATGATGAAGGGAGATTAAGAACGG 880
Query 937 TTCTTGATGTCGGATGCGGAGTTGCGAGTTTTGGAGCTTACCTTCTCGCGTCTGATATAA 996
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 881 TTCTTGATGTCGGATGCGGAGTTGCGAGTTTTGGAGCTTACCTTCTCGCATCTGATATAC 940
Query 997 TGACAATGTCACTAGCCCCTAATGATGTTCATCAGAACCAAATCCAGTTTGCGTTAGAAA 1056
| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 941 TCACAATGTCATTAGCCCCTAATGATGTTCACCAGAACCAAATCCAGTTTGCATTAGAAA 1000
Query 1057 GAGGAATCCCTGCTTATCTTGGTGTTTTAGGTACCAAAAGGCTTCCTTACCCGAGCAGAT 1116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GAGGAATCCCCGCTTATCTTGGTGTTTTAGGTACCAAAAGGCTTCCTTACCCGAGCAGAT 1060
Query 1117 CATTCGAGTTTGCTCATTGTTCTCGATGTAGGATTGATTGGCTTCAAAGAGACGGACTTC 1176
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1061 CATTCGAGCTAGCTCATTGTTCTCGATGTAGGATCGATTGGCTTCAAAGAGACGGACTCC 1120
Query 1177 TTCTTCTTGAGCTCGATCGGGTACTAAGACCGGGAGGTTATTTCGCGTATTCGTCTCCTG 1236
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1121 TTCTTCTTGAGCTCGATCGCGTACTAAGACCGGGAGGTTATTTCGCTTATTCGTCTCCTG 1180
Query 1237 AAGCTTACGCACAAGATGAAGAGAATTTGAAAATCTGGAAGGAGATGAGTGCTCTTGTTG 1296
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1181 AAGCTTACGCGCAAGATGAAGAAAATTTGAAAATCTGGAAAGAGATGAGTGCTCTTGTTG 1240
Query 1297 AAAGAATGTGTTGGAGAATTGCCGTTAAAAGAAACCAAACTGTGGTTTGGCAGAAACCGT 1356
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1241 AAAGAATGTGTTGGAGAATCGCTGTTAAAAGAAACCAAACTGTGGTTTGGCAGAAACCGT 1300
Query 1357 TGAGTAATGACTGTTACTTGGAGAGAGAGCCCGGGACACAGCCTCCTCTCTGTCGCTCAG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TGAGTAATGACTGTTACTTGGAGAGAGAGCCCGGGACACAGCCTCCTCTCTGTCGCTCAG 1360
Query 1417 ATGCTGATCCTGATGCGGTTGCGGGTGTTTCAATGGAAGCTTGCATCACTCCTTACTCCA 1476
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1361 ATGCTGATCCTGATGCGGTTGCGGGTGTGGCAATGGAAGCTTGCATCACTCCTTACTCCA 1420
Query 1477 AGCATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AGCATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTT 1480
Query 1537 CTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAAC 1596
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CACCTCCACGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAAC 1540
Query 1597 TTTGGAAACAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACA 1656
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1541 TTTGGAAACAACAAGTGGACAGTTACTGGAATTTGATGTCATCAAAAGTGAAATCAAACA 1600
Query 1657 CTGTGAGGAACATAATGGACATGAAAGCTCACATGGGTTCTTTCGCAGCTGCTCTTAAAG 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CTGTGAGGAACATAATGGACATGAAAGCTCACATGGGTTCTTTCGCAGCTGCTCTTAAAG 1660
Query 1717 ACAAAGATGTGTGGGTGATGAACGTTGTCTCTCCCGACGGTCCCAACACTCTAAAACTGA 1776
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1661 ACAAAGATGTCTGGGTGATGAACGTTATCTCTCCGGACGGTCCCAACACTCTAAAACTGA 1720
Query 1777 TCTACGACCGTGGTTTAATCGGAACAAATCATAACTGGTGTGAGGCTTTCTCTACATATC 1836
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1721 TCTACGACCGCGGTTTAATCGGGACAAATCATAACTGGTGTGAGGCTTTCTCTACATATC 1780
Query 1837 CTCGAACATACGATCTGTTGCACGCGTGGTCTA-TATTTTCAGACATTAAAAGCAAAGGA 1895
| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1781 CACGAACATACGATCTGTTGCACGCGTGGTC-AGTATTTTCAGACATAAAAAGCAAAGGA 1839
Query 1896 TGCAGTGCAGAGGATCTACTAATCGAGATGGATCGGATTCTTAGACCTACGGGATTCGTT 1955
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1840 TGCAGCGCAGAGGATCTATTAATCGAGATGGATCGGATTCTTAGACCTACAGGATTCGTT 1899
Query 1956 ATCATCAGAGATAAGCAGAGTGTTGTTGAGTCAATCAAGAAGTATTTGCAGGCTTTGCAT 2015
||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 1900 ATCATCAGAGATAAGCAAAGTGTAGTTGAATCAATCAAGAAGTATCTGCAGGCTTTGCAT 1959
Query 2016 TGGGAGACTGTGGCATCAGAGAAGGTAAATACAAGTTCAGAACTCGACCAAGACAGTGAA 2075
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1960 TGGGAGACAGTGGCATCAGAGAAGGTAAATACAGGTTCAGAACTCGACCAAGACAGTGAA 2019
Query 2076 GATGGTGAGAACAATGTCGTTTTCATTGTCCAGAAGAAACTTTGGCTCACCAGTGAAAGC 2135
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2020 GATGGTGAGAACAATGTGGTTTTCATTGTCCAGAAGAAACTGTGGCTCACCAGTGAAAGC 2079
Query 2136 CTTAGGGACAGC-GAGTAAAA 2155
|||||||||| | ||||||||
Sbjct 2080 CTTAGGGACA-CTGAGTAAAA 2099
> Ahg479845 jgi|Araly1|479845|fgenesh2_kg.3__2546__AT3G23300.1
Length=2317
Score = 917 bits (496), Expect = 0.0
Identities = 1130/1435 (79%), Gaps = 48/1435 (3%)
Strand=Plus/Plus
Query 527 AAGTTTTCCTGTTTGTGATGACCGGCACTCGGAAATCATCCCTTGCTTAGATAGGAAT-T 585
||| |||||||| |||||||| || ||||||| | || ||||| |||||||||||| |
Sbjct 479 AAGCTTTCCTGTGTGTGATGATCGATACTCGGAGCTTATTCCTTGTTTAGATAGGAATCT 538
Query 586 TCATCTACCAAATGAGGTTGAAGCTTGATCTCTCTTTAATGGAACATTATGAACGGCATT 645
| || || |||||||| |||||||||||| | ||||| ||||| ||||||||||| ||||
Sbjct 539 T-ATTTATCAAATGAGATTGAAGCTTGATTTGTCTTTGATGGAGCATTATGAACGTCATT 597
Query 646 GTCCTCCTCCCGAAAGACGGTTTAATTGTTTGATTCCTCCACCAT-CTGGATACAAGGTT 704
|||||||||| ||||| ||||||||||| ||||||||||| || | ||||||| ||| ||
Sbjct 598 GTCCTCCTCCTGAAAGGCGGTTTAATTGCTTGATTCCTCCTCC-TCCTGGATATAAGATT 656
Query 705 CCTATTAAGTGGCCTAAGAGTAGAGATGAAGTGTGGAAAGCAAACATACCTCACACTCAC 764
|| || |||||||| || |||||||||||||| ||||||| ||||| ||||| |||||
Sbjct 657 CCAATCAAGTGGCCGAAAAGTAGAGATGAAGTTTGGAAAGTGAACATTCCTCATACTCAT 716
Query 765 CTTGCAAAAGAGAAGTCTGATCAGAACTGGATGGTTGAGAAAGGCGAGAAAATTTCTTTT 824
||||| | ||||||||||| || ||||||||||||| ||||| ||||||| || |||
Sbjct 717 CTTGCGCATGAGAAGTCTGACCAAAACTGGATGGTTGTTAAAGGAGAGAAAA-TTAATTT 775
Query 825 CCC-GGTGGAGGCACTCATTTCCATTACGGTGCTGATAAATACATTGCATCGATCGCAAA 883
||| ||||||||||| ||||| ||||| ||||||||||| || |||||||| || |||||
Sbjct 776 CCCTGGTGGAGGCACACATTTTCATTATGGTGCTGATAAGTATATTGCATCAATGGCAAA 835
Query 884 TATGCTTAACTTTTCGAACGATGTATTGAATGACGAAGGG-AGATTAAGAACGGTTCTTG 942
||||||||||||| ||||| | || ||||| | | ||| || | || || ||||||
Sbjct 836 TATGCTTAACTTTCCGAACAACGTTTTGAACAATG-GGGGAAGGCTGAGGACATTTCTTG 894
Query 943 ATGTCGGATGCGGAGTTGCGAGTTTTGGAGCTTACCTTCTCGCGTCTGATATAATGACAA 1002
|||| || ||||| ||||| || ||||||| ||| ||||| || || || || ||||| |
Sbjct 895 ATGTTGGTTGCGGTGTTGCTAGCTTTGGAGGTTATCTTCTTGCATCAGAAATTATGACGA 954
Query 1003 TGTCAC-TAGCCCCTAATGATGTTCATCAGAACCAAATCCAGTTTGCGT-TAGAAAGAGG 1060
|||| | | || |||||||||||||||||||||||||| |||||||| | | || |||||
Sbjct 955 TGTC-CTTGGCACCTAATGATGTTCATCAGAACCAAATTCAGTTTGC-TCTTGAGAGAGG 1012
Query 1061 AATCCCTGCTTATCTTGGTGTTTTAGGTACCAAAAGGCTTCCTTACCCGAGCAGATCATT 1120
|| ||||| || ||||| ||| |||| ||||| ||||| || ||||| |||||||| ||
Sbjct 1013 GATTCCTGCATACCTTGGCGTTCTAGGGACCAAGAGGCTCCCATACCCAAGCAGATCCTT 1072
Query 1121 CGAGTTTGCTCATTGTTCTCGATGTAGGATTGATTGGCTTCAAAGAGACGG-ACTTCTTC 1179
|| ||||||| ||||| || || | || ||||||||||||||||| || | ||||||
Sbjct 1073 TGAACTTGCTCACTGTTCGCGTTGCCGAATCGATTGGCTTCAAAGAGATGGTA-TTCTTC 1131
Query 1180 TTCTTGAGCTCGATC-GGGTACTAAGACCGGGAGGTTATTTCGCGTATTCGTCTCCTGAA 1238
|||| ||||| || | |||| |||||||| || || ||||| || ||||||||||| |||
Sbjct 1132 TTCTCGAGCTAGA-CAGGGTGCTAAGACCTGGTGGCTATTTTGCATATTCGTCTCCAGAA 1190
Query 1239 GCTTACGCACAAGATGAAGAGAATTTGAAAATCTGGAAG-GAGATGAGTGCTCTTGTTGA 1297
|| || ||||||||||||||| | | | ||| ||| || || |||||||||||||| |
Sbjct 1191 GCATATGCACAAGATGAAGAGGACCTCAGAATATGG-AGAGAAATGAGTGCTCTTGTGGG 1249
Query 1298 AAGAATGTGTTGGA-GAATTGCCGTTAAAAGAAACCAAACTGTGGTTTGGCAGAAACCGT 1356
| |||||||||| | || || | ||||| || |||||||| ||||||| ||||| |
Sbjct 1250 GCGTATGTGTTGGACG-ATAGCTGCAAAAAGGAATCAAACTGTAATTTGGCAAAAACCTT 1308
Query 1357 TGAGTAATGACTGTTACTT-GGAGAGAGAGCCCGGGACACAGCCTCCTCTCTGTC-GCTC 1414
||| ||||| ||||| || ||| ||||| || || || || |||||||| || | ||
Sbjct 1309 TGACAAATGATTGTTATTTGGGA-AGAGAACCTGGAACCCAACCTCCTCTTTG-CAATTC 1366
Query 1415 AGAT-GCTGATCCTGATGCGGTTG-CGGGTGTTTCA-ATGGAAGCTTGCATCACTCCTTA 1471
||| | ||| || ||||| | || |||| | | |||||||| ||||| |||| ||
Sbjct 1367 TGATAG-TGACCCCGATGCTG-TGTATGGTG-TAAACATGGAAGCCTGCATTACTCAATA 1423
Query 1472 CTCCAAGCATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGAC 1531
| | |||||||| ||||||||||||||||| || ||||| ||||||||| | || ||
Sbjct 1424 CAGTGACCATGACCACAAAACCAAGGGAAGTGGATTGGCTCCATGGCCAGCTCGATTAAC 1483
Query 1532 TTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACAC 1591
||| ||||||| || || || ||||| || || || || ||||||||||||||||||||
Sbjct 1484 CTCTCCTCCTCCTCGGCTAGCTGATTTTGGCTACTCCACTGACATGTTTGAGAAGGACAC 1543
Query 1592 -GGAACTTTGGAAACAACA-AGTGGACAGTTACT-GGA-ATC-TGATGTCATCGAAAGTC 1646
| ||| ||||| | | | || || | ||| | ||| || ||| ||| | ||| ||
Sbjct 1544 AGAAAC-TTGGAGGC-AGAGGGTAGATACTTATTGGGATCTCTTGA-GTCCT-AAAATTC 1599
Query 1647 AAATCAAACACTGTGAGGAACATAATGGACATGAAAGCTCACATGGGTTCTTTCGCAGCT 1706
||||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 1600 -AATCAGACACTGTGAGGAACATAATGGACATGAAAGCAAACATGGGTTCTTTTGCTGCT 1658
Query 1707 GCTCTTAAAGACAAAGATGTGTGGGTGATGAACGTTGTCTCTCCCGACGGTCCCAACACT 1766
||||| ||||| |||||||| ||||| ||||| |||||| || ||||| || |||||
Sbjct 1659 GCTCTGAAAGAAAAAGATGTTTGGGTTATGAATGTTGTCCCTGAAGACGGACCAAACACG 1718
Query 1767 CTAAAACTGATCTACGACCGTGGTTTAATCGGAACAAATCATAACTGGTGTGAGGCTTTC 1826
|| |||||||| |||||| | || | || || | ||||| ||||||||| || |||
Sbjct 1719 CTTAAACTGATATACGACAGAGGCCTGATGGGCGCTGTTCATAGCTGGTGTGAAGCGTTC 1778
Query 1827 TCTACATATCCTCGA--ACATACGATCTGTTGCACGCGTGGTCTAT-ATTTTCAGACATT 1883
|| || || || ||| || || ||| | | ||||| ||| ||| || | | || ||
Sbjct 1779 TCAACTTA-CC-CGAGGACTTATGATTTACTCCACGCTTGGGATATCATAT-CTGATATC 1835
Query 1884 AA-AAGCAAAGGATGCAGTGCAGAGGATCTACTAATCGAGATGGATCGGATTCTT 1937
| ||| | ||| || |||||||||||| | || | ||||||||||| ||||||
Sbjct 1836 AGGAAG-AGAGGTTGTAGTGCAGAGGATTTGCTGTTGGAGATGGATCGTATTCTT 1889
> Ahg946901 jgi|Araly1|946901|scaffold_703130.1
Length=319
Score = 145 bits (78), Expect = 2e-33
Identities = 158/193 (82%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
|||| ||||| || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 31 ATAAGACCAAAGG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
||||||||||||||| |||||||||| | || |||||||| | | || | |
Sbjct 90 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTTGAGAA-G-TA---TAC----G--A 138
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG 1664
|||||||||||||| | | | | |||||||| ||||||||||||||||||||||||
Sbjct 139 CAACAAGTGGACAG--A----AGTGTAATGTCATCAAAAGTCAAATCAAACACTGTGAGG 192
Query 1665 AACATAATGGACA 1677
|||||||| ||||
Sbjct 193 AACATAATAGACA 205
> Ahg938044 jgi|Araly1|938044|scaffold_502235.1
Length=427
Score = 143 bits (77), Expect = 6e-33
Identities = 200/253 (79%), Gaps = 34/253 (13%)
Strand=Plus/Plus
Query 1426 CTGATGCGGTTGCGGGTGTTTCAATGGAAGCTTGCATCACTCCTTACTCCAAGCATGACC 1485
|||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 75 CTGATGCGTTTTCGGGTGTGCCAATGGAAGCTTGCATCACTCTTTACTCCAAGC---ACC 131
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
| || || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 132 -----A--AA-GG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 182
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
||||||||||||||| |||||||||| | || ||| | | || | | | | |
Sbjct 183 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTT--G-A-GA-A--G-----T--ATA 228
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG 1664
| ||||||||| | ||| | | |||||||| ||||||||||||||||||||||||
Sbjct 229 C-GCAAGTGGAC----A--GGAGTGTAATGTCATCAAAAGTCAAATCAAACACTGTGAGG 281
Query 1665 AACATAATGGACA 1677
|||||||| ||||
Sbjct 282 AACATAATAGACA 294
> Ahg945620 jgi|Araly1|945620|scaffold_701849.1
Length=319
Score = 139 bits (75), Expect = 8e-32
Identities = 157/193 (81%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
|||| ||||| || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 31 ATAAGACCAAAGG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
|||||||||||||| |||||||||| | || ||| | | || | | | | | | |
Sbjct 90 TGTCTTGCGGATTTCCGTTATTCAACGGGTATATTT--G-A-GA-A--GTA-TAT-G--A 138
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG 1664
|||||||||||| | ||| | | |||||||| ||||||||||||||||||||||||
Sbjct 139 CAACAAGTGGAC----A--GGAGTGTAATGTCATCAAAAGTCAAATCAAACACTGTGAGG 192
Query 1665 AACATAATGGACA 1677
|||||||| ||||
Sbjct 193 AACATAATAGACA 205
> Ahg934328 jgi|Araly1|934328|scaffold_402316.1
Length=319
Score = 139 bits (75), Expect = 8e-32
Identities = 157/193 (81%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
|||| ||||| || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 31 ATAAGACCAAAGG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
||||||||||||||| |||||||||| | || |||||||| | | || | |
Sbjct 90 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTTGAGAA-G-TA---TAC----G--A 138
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG 1664
|||||||||||| | ||| | | ||||| || ||||||||||||||||||||||||
Sbjct 139 CAACAAGTGGAC----A--GGAGTGTAATGTCGTCAAAAGTCAAATCAAACACTGTGAGG 192
Query 1665 AACATAATGGACA 1677
|||||||| ||||
Sbjct 193 AACATAATAGACA 205
> Ahg947727 jgi|Araly1|947727|scaffold_703956.1
Length=319
Score = 134 bits (72), Expect = 4e-30
Identities = 157/194 (81%), Gaps = 21/194 (11%)
Strand=Plus/Plus
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
|||| ||||| || | |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 31 ATAAGACCAAAGG-TGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
||||||||||||||| |||||||||| | || |||||||| | | || | |
Sbjct 90 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTTGAGAA-G-TA---TAC----G--A 138
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGA-AAGTCAAATCAAACACTGTGAG 1663
|||||||||||| | ||| | | |||||||| | ||||||||||||||||||||||
Sbjct 139 CAACAAGTGGAC----A--GGAGTGTAATGTCATC-AGAAGTCAAATCAAACACTGTGAG 191
Query 1664 GAACATAATGGACA 1677
||||||||| ||||
Sbjct 192 GAACATAATAGACA 205
> Ahg946665 jgi|Araly1|946665|scaffold_702894.1
Length=319
Score = 134 bits (72), Expect = 4e-30
Identities = 157/194 (81%), Gaps = 21/194 (11%)
Strand=Plus/Plus
Query 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
|||| ||||| || | |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 31 ATAAGACCAAAGG-TGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
Query 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
||||||||||||||| |||||||||| | || |||||||| | | || | |
Sbjct 90 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTTGAGAA-G-TA---TAC----G--A 138
Query 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGA-AAGTCAAATCAAACACTGTGAG 1663
|||||||||||| | ||| | | |||||||| | ||||||||||||||||||||||
Sbjct 139 CAACAAGTGGAC----A--GGAGTGTAATGTCATC-AGAAGTCAAATCAAACACTGTGAG 191
Query 1664 GAACATAATGGACA 1677
||||||||| ||||
Sbjct 192 GAACATAATAGACA 205
> Ahg951833 jgi|Araly1|951833|scaffold_20300002.1
Length=304
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1632 ATGTCATCGAAAGTCAAATCAAACACTGTGAGGAACATAATGGACA 1677
|||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 145 ATGTCATCAAAAGTCAAATCAAACACTGTGAGGAACATAATAGACA 190
> Ahg938582 jgi|Araly1|938582|scaffold_502773.1
Length=304
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1632 ATGTCATCGAAAGTCAAATCAAACACTGTGAGGAACATAATGGACA 1677
|||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 145 ATGTCATCAAAAGTCAAATCAAACACTGTGAGGAACATAATAGACA 190
> Ahg924085 jgi|Araly1|924085|scaffold_105366.1
Length=304
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1632 ATGTCATCGAAAGTCAAATCAAACACTGTGAGGAACATAATGGACA 1677
|||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 145 ATGTCATCAAAAGTCAAATCAAACACTGTGAGGAACATAATAGACA 190
> Ahg920492 jgi|Araly1|920492|scaffold_101773.1
Length=397
Score = 69.4 bits (37), Expect = 1e-10
Identities = 43/46 (93%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1632 ATGTCATCGAAAGTCAAATCAAACACTGTGAGGAACATAATGGACA 1677
||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 238 ATGTCGTCAAAAGTCAAATCAAACACTGTGAGGAACATAATAGACA 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89626346485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5