BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04440.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919122 jgi|Araly1|919122|scaffold_100403.1 2351 0.0
Ahg494671 jgi|Araly1|494671|fgenesh2_kg.8__487__AT5G43320.1 1210 0.0
> Ahg919122 jgi|Araly1|919122|scaffold_100403.1
Length=1447
Score = 2351 bits (1273), Expect = 0.0
Identities = 1382/1435 (96%), Gaps = 5/1435 (0%)
Strand=Plus/Plus
Query 556 GAAAAATGGATCGTGTGGTTGGTGGTAAGTTCAAGCTCGGACGAAAGCTTGGAAGTGGCT 615
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 16 GAAAAATGGATCGTGTGGTTGGTGGTAAGTTCAAGCTCGGACGTAAGCTTGGAAGTGGTT 75
Query 616 CATTTGGTGAAATTTTCCTAGGAGTGAATGTACAAACTGGAGAAGAAGTGGCTGTTAAGC 675
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 76 CCTTTGGTGAAATTTTCCTAGGAGTCAATGTACAAACTGGAGAAGAAGTGGCTGTTAAAC 135
Query 676 TTGAACCTCTCCGAGCTAGGCATCCTCAGCTTCATTACGAGTCAAAGCTTTATATGCTTC 735
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TTGAACCTCTCCGGGCTAGGCATCCTCAGCTTCATTACGAGTCAAAGCTTTATATGCTTC 195
Query 736 TCCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTGAATTCAACT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TCCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTGAATTCAACT 255
Query 796 GTATGGTGATCGACCTTCTCGGTCCTAGTATGGAAGAATTTTTCAACTATTGCAGTCGAT 855
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 256 GTATGGTTATCGACCTTCTCGGTCCTAGTATGGAGGAATTTTTCAACTATTGCAGTCGAT 315
Query 856 CCTTCTCTCTTAAGACAGTTCTAATGCTCGCAGATCAAATGATAAATAGAGTGGAGTATA 915
||||| |||||||||| |||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 316 CCTTCACTCTTAAGACTGTTCTAATGCTCGCTGATCAGATGATAAATAGAGTCGAGTATA 375
Query 916 TGCATGTTAA-AGGCTTCCTTCATCGTGATATTAAGCCAGATAACTTTTTGATGGGTCTT 974
||||||| | ||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 376 TGCATGT-ACGAGGGTTTCTTCATCGTGATATCAAGCCAGATAACTTTTTGATGGGTCTT 434
Query 975 GGACGCAAAGCAAACCAGGTGTACATCATTGACTATGGGCTTGCCAAGAAGTATAGAGAT 1034
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 435 GGACGCAAAGCAAACCAGGTGTACATCATTGACTACGGGCTTGCCAAGAAGTATAGAGAT 494
Query 1035 CTTCAAACACACAAGCATATTCCATACAGGGAAAACAAGAACCTTACTGGAACAGCTCGA 1094
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 495 CTTCAAACACACAAGCATATTCCATACAGGGAAAACAAGAATCTTACAGGAACAGCTCGA 554
Query 1095 TATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGATGATCTGGAATCT 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGATGATCTGGAATCT 614
Query 1155 CTAGGCTATCTGCTTATGTATTTTCTTCGAGGAAGCCTTCCTTGGCAAGGCCTTCGTGCA 1214
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTTGGCTATGTGCTTATGTATTTTCTTCGAGGAAGCCTTCCTTGGCAAGGCCTTCGTGCA 674
Query 1215 GGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAAGACTAACACCAGTGGAG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAAGACTAACACCAGTGGAG 734
Query 1275 GTCCTCTGTAAAAACTTTCCACCTGAGTTCACATCGTATTTTCTCTATGTGCGTTCACTA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 GTCCTCTGTAAAAACTTTCCACCTGAGTTCACATCGTATTTTCTCTATGTGCGTTCATTA 794
Query 1335 CGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGGCTTTTCAGAGACCTATTTATC 1394
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 795 CGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGGCTTTTCAGAGAACTATTTATC 854
Query 1395 CGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATATTGAGGTATCCACAGTTC 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATATTGAGGTATCCACAGTTC 914
Query 1455 GGCTCCAGTTCCAGCTCGAATTCCAAACCAAGACCAACTTTAAGACCAGCTATGAATATT 1514
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 915 GGCTCCAGTTCCAGCTCCAATTCCAAACCAAGACCAAGTTTAAGACCAGCTATGAATATT 974
Query 1515 CCAGTACCATCTGCCGACAAAGCGGAAAAGCCTCCAATTGGACAGGACAGCCGTGAGAGG 1574
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||
Sbjct 975 CCAGTACCATCTGCCGACAAAGCAGAAAAGCCTTCAATTGGGCAGGACAGCCGCGAGAGG 1034
Query 1575 TTCTCAGGTGTTTTCGAGGCATACACCAGAAGAAATGGCTCAGGAACCGGCGTTCAAGCT 1634
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1035 TTCTCAGGTGTTTTCGAGGCATACAGCAGAAGAAATGGCTCAGGAACCGGCGTTCAAGCT 1094
Query 1635 GATCAGTCTAGTAGACCAAGAACCTCAGAGAATGTTCTTGCATCCAAGGACACGCAAAAC 1694
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GATCAATCTGGTAGACCAAGAACCTCAGAGAATGTTCTTGCATCCAAGGACACGCAAAAC 1154
Query 1695 CAGGAGAGACCAA-ACTCTTTATCTAGGAACCTGAGTTCGTCAAGAAAAGCAATTGCTGG 1753
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CAGGAGAGACCAATA-TCTTTATCTAGGAACCTGAGTTCGTCAAGAAAAGCAATTGCTGG 1213
Query 1754 GTCAAGTGTTCGAGCCACTTCCTCAGCTGATTTCACAGAGAATCGATTAAGCAGACTCAT 1813
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1214 GTCAAGTGTTCGAGCCACTTCCTCAGCTGATTTCACAGAGAATCGATCAAGCAGACTCAT 1273
Query 1814 CCCAAACAATGATCGGTCTTCTACAACTCTGAGGACCCAGTTCGCTCCTTCGTCCTCCTC 1873
||||||||| | |||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 1274 CCCAAACAACGGTCGGTCCTCTACAACTCAGAGGACCCAGTTTGCTCCTTCGTCCTCCTC 1333
Query 1874 AGTAGCCACAAAAGCTGCACCAACGAGAGCCGCTCGTGACATTACCCTCCAGAGCCTTGA 1933
|||||||||| ||||||||||||||| |||| || |||||||||||||||||||| ||
Sbjct 1334 TTTAGCCACAAAGGCTGCACCAACGAGAACCGCACGGGACATTACCCTCCAGAGCCTCGA 1393
Query 1934 GCTCCTCAGTATTGGGAACAGCAAGAGGAAGTGACTGTCTGCATTTTGCCGCCCG 1988
|||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 1394 GCTCCTCAGTATTGGGAACAGCAAGAGGAAGTGACTATCTGCATTT-GTCGCCCG 1447
> Ahg494671 jgi|Araly1|494671|fgenesh2_kg.8__487__AT5G43320.1
Length=2060
Score = 1210 bits (655), Expect = 0.0
Identities = 1119/1335 (84%), Gaps = 63/1335 (5%)
Strand=Plus/Plus
Query 561 ATGGATCGTGTGGTTGGTGGTAAGT-TCAAGCTCGGACG-AAAGCTTGGAAGTGGCTCAT 618
|||||||||||||||||||| |||| | ||||| ||||| ||| ||||||||||| ||||
Sbjct 463 ATGGATCGTGTGGTTGGTGGCAAGTAT-AAGCTTGGACGTAAA-CTTGGAAGTGGTTCAT 520
Query 619 TTGGTGAAATTTTCCTAGGAGTGAATGTACAAACTGGAGAAGAAGTGGCTGTTAAGCTTG 678
|||||||| |||| ||||| || |||||||||||||| |||||||| ||||| |||||||
Sbjct 521 TTGGTGAACTTTTTCTAGGGGTTAATGTACAAACTGGTGAAGAAGTAGCTGTGAAGCTTG 580
Query 679 AACCTCTCCGA--GCTAGGCATCCTCAGCTTCATTACGAGTCAAAGCTTTATATGCTTCT 736
|| | || ||| |||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 581 AA-C-CTGCGAGGGCTAGGCATCCTCAACTTCATTATGAATCAAAGCTCTATATGCTTCT 638
Query 737 CCAAGGAGGAACTGGTATTCCTCACCTCAAATGGTTTGGTGTTGAGGGTGAATTCAACTG 796
|||||||||||||| |||||||| || ||||||| ||| || |||||||||||||||||
Sbjct 639 TCAAGGAGGAACTGGAATTCCTCATCTAAAATGGTATGGGGTAGAGGGTGAATTCAACTG 698
Query 797 TATGGTGATCGACCTTCTCGGTCCTAGTATGGAAGAATTT-TTCAACTATTGCAGTC-GA 854
||||||||| || ||| | ||||| || |||| || |||| || || ||||| |||| ||
Sbjct 699 TATGGTGATTGATCTTTTGGGTCCGAGCATGG-AGGATTTATTTAATTATTGTAGTCGGA 757
Query 855 TCCTTCT-CTCTTAAGACAGTTCTAATGCTCGCAGATCAAATGATAAATAGAGTGGAGTA 913
|| | ||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 758 -GGTT-TAATCTAAAGACGGTTCTAATGCTCGCAGATCAGATGATAAATAGAGTTGAGTA 815
Query 914 TATGCATGTTAAAGGCTTCCTTCATCGTGATATTAAGCCAGATAACTTTTTGATGGGTCT 973
||||||||| || || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 816 TATGCATGTCCGGGGATTTCTTCATCGTGACATAAAGCCAGATAACTTTTTGATGGGTCT 875
Query 974 TGGACGCAAAGCAAACCAGGTGTACATCATTGACTATGGGCTTGCCAAGAAGTATAGAGA 1033
|||||||||||| ||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 876 TGGACGCAAAGCGAACCAGGTGTACATCATTGACTACGGACTTGCAAAAAAGTATAGAGA 935
Query 1034 TCTTCAAACACACAAGCATATTCCATACAGGGAAAACAAGAACCTTACTGGAACAGCTCG 1093
||||||||| || | ||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 936 TCTTCAAACTCATAGGCACATTCCCTACAGGGAAAACAAGAATCTTACTGGAACAGCCCG 995
Query 1094 ATATGCAAGTGTTAACACCCATCTTGGAATTGAGCAAAGTAGAAGGGATGATCTGGAATC 1153
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 996 ATATGCAAGTGTTAACACTCATCTTGGAATTGAGCAAAGTAGGAGGGACGATCTGGAATC 1055
Query 1154 TCTAGGCTATC-TGCTTATGTATTTTCTTCGAGGAAGCCTTCCTTGGCAAGGCCTTCGTG 1212
||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1056 TCTTGGCTA-CGTGCTTATGTATTTTCTTCGAGGAAGTCTTCCTTGGCAAGGCCTTCGTG 1114
Query 1213 CAGGTACCAAAAAGCAGAAGTATGACAAGATCAGTGAAAAGAAAAGACTAACACCAGTGG 1272
| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 1115 CGGGTACCAAAAAACAGAAGTATGACAAGATCAGCGAAAAGAAAAGGCTTACACCTGTAG 1174
Query 1273 AGGTCCTCTGTAAAAACTTTCCACCTGAGTTCACATCGTATTTTCTCTATGTGCGTTCAC 1332
|||| ||||||||| ||||||||||||||||||||| || || |||||||| || |||
Sbjct 1175 AGGTTCTCTGTAAATCCTTTCCACCTGAGTTCACATCATACTTCCTCTATGTACGATCAT 1234
Query 1333 TACGGTTTGAAGACAAACCAGATTATTCATACCTAAAGAGGCTTTTCAGAGACCTATTTA 1392
| ||||| |||||||||||||||||| |||||||||||||||||||||| || || || |
Sbjct 1235 TGCGGTTCGAAGACAAACCAGATTATCCATACCTAAAGAGGCTTTTCAGGGATCTCTTCA 1294
Query 1393 TCCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATATTGAGGTATCCACAGT 1452
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1295 TTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACAATCTTGAAGTATCCACAGT 1354
Query 1453 TCGGCTCCAGTTCCAGCTCGAATTCCAAACCAAGACCAA-CTTTAAGACCAGCTATGAAT 1511
| | ||| | |||||||| | |||||||||||| ||| | | | ||||||||||||||
Sbjct 1355 TTAGTTCCGGCTCCAGCTCTAGCTCCAAACCAAGATCAAGCCTGA-GACCAGCTATGAAT 1413
Query 1512 ATTCCAGTACCATCTGCCGACAA-AGCGGA-AAAGCCTCCAA-T-----TGGACAGGACA 1563
|||||||||| |||| || || | | || ||| | | || | ||| || ||||
Sbjct 1414 CCTCCAGTACCAACTGCGGA-AAGACCAGATAAA-CATTCAGCTGGCGCTGGGCAAGACA 1471
Query 1564 GCCGTGAGAGGTTCTCAGGTGTTTTCGAGGCATACACCAGAAGAAATGGCTCAGGAACCG 1623
| ||||| || |||||||||| ||| |||||||| | ||||||||||||||||||| ||
Sbjct 1472 GTCGTGATAGATTCTCAGGTGCTTTAGAGGCATATGCTAGAAGAAATGGCTCAGGAAGCG 1531
Query 1624 GCGT--T-CAAGCTGATC-AGTCTAGTAGACCAAGAACCTCAGAGAATGTTCTT-GCATC 1678
| || | |||||||||| | ||||| | |||||||||||||||||||| || |||||
Sbjct 1532 GTGTGGTTCAAGCTGATCGA-TCTAG-A--CCAAGAACCTCAGAGAATGTA-TTAGCATC 1586
Query 1679 --CAA-GGA--CA-CGC-A-AAACC-AGGAGAGAC-C-AAA--C---TCT-TT-ATCTAG 1720
||| ||| || | | | ||| | | |||||| | ||| | ||| || | | ||
Sbjct 1587 ATCAAAGGATACAACTCCACAAAACTATGAGAGAGTCGAAAGACCAATCTCTTCAACAAG 1646
Query 1721 GA-AC-CTGAGTTCGTCAAGAAAAGCAATTGCTGGGTCAAGTGTTCGAGCCACTTCCTCA 1778
| || | ||||||||||||||||| ||| | || || || ||||||||||| |||
Sbjct 1647 -ACACGCA-AGTTCGTCAAGAAAAGCTGTTG-TC--TCGAGCGTACGAGCCACTTCTTCA 1701
Query 1779 GCTGATTTCACAGAGAATCGATTAAGCAGACTCATCCCAAACAATGATCGGTCTTCTACA 1838
||||||||||||||||| || | |||||| | |||||||||||| || || || ||
Sbjct 1702 GCTGATTTCACAGAGAACCGCTCGAGCAGAGTTGTCCCAAACAATGGCCGTTCCTCAACC 1761
Query 1839 ACTCTGAGGACCCAG 1853
||| |||||| |||
Sbjct 1762 GCTCAGAGGACTCAG 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5