BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04445.1 Length=519 Score E Sequences producing significant alignments: (Bits) Value Ahg470423 jgi|Araly1|470423|fgenesh2_kg.1__377__AT1G04445.1 364 3e-100 > Ahg470423 jgi|Araly1|470423|fgenesh2_kg.1__377__AT1G04445.1 Length=464 Score = 364 bits (197), Expect = 3e-100 Identities = 306/355 (86%), Gaps = 21/355 (6%) Strand=Plus/Plus Query 1 ATGCCATTTTCAGAA-CCCCAAGAATGTGCGGTTTGTAAGAGAGTCTTCTTATCATCACA 59 ||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGCATTTTCA-AACCCCCAAGAATGTGCGATTTGTAAGAGAGTCTTCTTATCATCACA 59 Query 60 CCAGCTGATCTCACACTACAACGCCGCTCACTCCAATCGCCA-GTATTCCACCTTCTCTT 118 ||| ||||||||||||| ||||| | ||||||||||||||| | |||||||||||||| Sbjct 60 CCACCTGATCTCACACTTCAACGATGTTCACTCCAATCGCCACG-GTTCCACCTTCTCTT 118 Query 119 CCTCCCCCGCCGCCGCCGCCGCTGCTGCACCCACCACCTTCCGCCACTACACTAACGTAA 178 ||| ||| | | | ||| |||||||| |||||||||||||| | ||||||| Sbjct 119 CCT---------CCG-C-CATC-GCTACACCCACCTCCTTCCGCCACTACCCGAACGTAA 166 Query 179 ACGGCCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCAGTTTGACGTGAATTATTACC 238 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 167 A---CCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCATTTTGACGTGAATTATTACC 223 Query 239 GTAGAGGTTACTTAGATGATCAAGGGAGGTTCCATAAAGGATCTCCTCATG-CGCCGGCG 297 |||| ||||||||||| || || |||||||| |||||||||| | ||| | |||||| | Sbjct 224 GTAGGGGTTACTTAGACGACCACGGGAGGTTTCATAAAGGATGTTCTC-CGACGCCGGTG 282 Query 298 ATGAGTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGCCGACGACGA 352 || | |||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 283 ATAACTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGACGACGCCGA 337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18887016555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5