BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G04445.1

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470423 jgi|Araly1|470423|fgenesh2_kg.1__377__AT1G04445.1          364    3e-100


> Ahg470423 jgi|Araly1|470423|fgenesh2_kg.1__377__AT1G04445.1
Length=464

 Score =  364 bits (197),  Expect = 3e-100
 Identities = 306/355 (86%), Gaps = 21/355 (6%)
 Strand=Plus/Plus

Query  1    ATGCCATTTTCAGAA-CCCCAAGAATGTGCGGTTTGTAAGAGAGTCTTCTTATCATCACA  59
            ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1    ATGGCATTTTCA-AACCCCCAAGAATGTGCGATTTGTAAGAGAGTCTTCTTATCATCACA  59

Query  60   CCAGCTGATCTCACACTACAACGCCGCTCACTCCAATCGCCA-GTATTCCACCTTCTCTT  118
            ||| ||||||||||||| |||||  | ||||||||||||||| |  ||||||||||||||
Sbjct  60   CCACCTGATCTCACACTTCAACGATGTTCACTCCAATCGCCACG-GTTCCACCTTCTCTT  118

Query  119  CCTCCCCCGCCGCCGCCGCCGCTGCTGCACCCACCACCTTCCGCCACTACACTAACGTAA  178
            |||         ||| | |  | ||| |||||||| |||||||||||||| | |||||||
Sbjct  119  CCT---------CCG-C-CATC-GCTACACCCACCTCCTTCCGCCACTACCCGAACGTAA  166

Query  179  ACGGCCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCAGTTTGACGTGAATTATTACC  238
            |   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  167  A---CCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCATTTTGACGTGAATTATTACC  223

Query  239  GTAGAGGTTACTTAGATGATCAAGGGAGGTTCCATAAAGGATCTCCTCATG-CGCCGGCG  297
            |||| ||||||||||| || || |||||||| |||||||||| | |||  | |||||| |
Sbjct  224  GTAGGGGTTACTTAGACGACCACGGGAGGTTTCATAAAGGATGTTCTC-CGACGCCGGTG  282

Query  298  ATGAGTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGCCGACGACGA  352
            || | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  283  ATAACTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGACGACGCCGA  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18887016555


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5