BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04450.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470424 jgi|Araly1|470424|fgenesh2_kg.1__378__AT1G04450.1 1291 0.0
> Ahg470424 jgi|Araly1|470424|fgenesh2_kg.1__378__AT1G04450.1
Length=800
Score = 1291 bits (699), Expect = 0.0
Identities = 770/804 (96%), Gaps = 5/804 (1%)
Strand=Plus/Plus
Query 99 tctctctccctttccaattcttttctcAATTATTTCCATAATGAAAATCAATGCTATCAA 158
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTTTCCAATTCTTTTCTCAATTATTTCCAAAATGAAAATCAATGCTATCAA 60
Query 159 GGTTTTGGCACATTCACAGAGTTACAGCATCTGAAGTTCTAACCGGAAACCATTCCTCCC 218
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GGTTTTGGCACATTCAGAGAGTTACAGCATCTGAATTTCTAACCGGAAACCATTCCTCCC 120
Query 219 G-AGATGGCGACCGTGAAAGGCCTTCTTAAAGGCCTTCGCTACATTACTCAGATTTTCGA 277
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTA-ATGACGACCGTGAAAGGCCTTCTTAAAGGCCTTCGCTACATTACTCAGATTTTCGA 179
Query 278 CGAAGAAAAAGACAAGGACATGCAGATCGGGTTTCCTACCGATGTAAAGCATGTCGCCCA 337
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGAAGATAAAGACAAGGATATGCAGATCGGGTTTCCTACCGATGTAAAGCATGTCGCCCA 239
Query 338 CATCGGATCCGACGGTCCCGCGACCAATGTGCCAAGCTGGATGGGTGACTTCAAACCTCA 397
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 240 CATCGGATCCGACGGTCCCGCGGCCAATATGCCAAGCTGGATGGGTGACTTCAGACCTCA 299
Query 398 AGAAAACGAGAATGGTCAAGTAGTTTCTCGAGCAGATGCCAACAACAATCAAATAGGAGA 457
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 AGACAATGAGAATGGTCAAGTAGTTTCTCGAGGAGATGCCAACAACAATCAAATAGGAGA 359
Query 458 AGGAGTTGGATTACAAGAGTTGTTGCCTCCTACCGACAAACCAAAGCACAAGAAGACAAG 517
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 360 AGGAGTTGGATTACAAGAGTTGTTGCCTCCTACCGAGAAACCGAAGCACAAGAAGACTAG 419
Query 518 GCGTAAATCCGAGACGGTCTCACAAAACGGTTCTCCGCCTAGGCGAAACAGCAGTGCCTC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GCGTAAATCCGAGACGGTCTCACAAAACGGTTCTCCGCCTAGGCGAAACAGCAGTGCGTC 479
Query 578 AGCATCAGATATGCAACCAAAAAACACAAGACGTCACCACAGGAGTAGGCACGGGTCGAT 637
|||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 480 AGCATCAGATATGCAACCAAAACACCCGAGACGTCACCACAGGAGTAGGCACGGATCGAT 539
Query 638 AGATTCATCGAATGATCCATCAGTTAGGAGGAGGCGTGTTGTCTCGGTTACCACCAACGA 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AGATTCATCGAATGATCCATCAGTTAGGAGGAGGCGTGTTGTCTCGGTTACCACT---GA 596
Query 698 TATGGAAGGTTCTTACCCTCTTTCAGATAGTTCTACTCATAGTAGAAAGTCTACATCACG 757
|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 597 TATGGAAGGTTCATACCCTCTTTCAGACAGTTCTACTCATACTAGAAAGTCTACATCACG 656
Query 758 TCATAGGAAGCCAAAAGGATCAGGAGGAGGAGAGCTATCAATGAAGAAGACGAAAGGGAA 817
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 TCATAGGAAGCCAAAAGAATCAGGAGGAGGAGAGCTATCAATGAAGAAGACAAAAGGGAA 716
Query 818 AACTGAGAATCCTATTGTTGAATCAGTCGATACATGTAATGATAATAATATCAGTGACAA 877
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 717 AACTGAGAATCCTATTGTTCAATCAGTCGATAAATGTAATGATAATAATATCAGTGACAA 776
Query 878 AGAGTAAAACACATCATGGTTTTG 901
||||||||||||||||||||||||
Sbjct 777 AGAGTAAAACACATCATGGTTTTG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5