BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04470.1
Length=3307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470425 jgi|Araly1|470425|fgenesh2_kg.1__379__AT1G04470.1 5188 0.0
Ahg345092 jgi|Araly1|345092|fgenesh1_pg.C_scaffold_4001434 2115 0.0
> Ahg470425 jgi|Araly1|470425|fgenesh2_kg.1__379__AT1G04470.1
Length=3275
Score = 5188 bits (2809), Expect = 0.0
Identities = 3135/3292 (95%), Gaps = 23/3292 (1%)
Strand=Plus/Plus
Query 3 TTCTCGGACATCTGATTTCTTAAACCCGTATCCGTCTGGTTTCTAT-TTCCTTCTTGCCT 61
|||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||
Sbjct 1 TTCTCGGACATCTGATTTCTTAAACCCGAATCCGTCTGG--TCTTTCTTCCTTCTTGCCT 58
Query 62 CCCCTCCGTGATGGTTCGTCATTCTCGGAGGGAGTCCTTTTTCGACATGGTTGGCTTTGA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CCCCTCCGTGATGGTTCGTCATTCTCGGAGGGAGTCCTTTTTCGACATGGTTGGCTTTGA 118
Query 122 GGTTTGTCCTGATACCGATCTTCTTTGGCCATTCGGGAAGCTTGATGGTCTTGATCGGGA 181
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 GGTTTGTCCTGATACTGATCTTCTCTGGCCATTCGGGAAGCTTGATGGTCTTGATCGGGA 178
Query 182 TGAAATCCGTGAAACCGCGTATGAGATCTTTTTCGCCGCATGTCGATCATCACCTGGATT 241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TGAAATCCGTGAAACCGCGTATGAGATCTTTTTTGCCGCATGTCGATCATCACCTGGATT 238
Query 242 TGGAGGTAGAAATGCTCTCACATTCTACTCCAAGCACAATGCTGGTGACCATCAAGGGGA 301
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 TGGAGGCAGAACTGCTCTCACATTCTACTCCAAGCACAATGGTGGTGACCATCAAGGGGA 298
Query 302 TGGAATAGGAGGAGGAGGAGGATCTGGATCATCTAACGGCTCTGGATTCGGGTCTTTAGG 361
|||||| |||||||||||| ||| ||| |||| || ||||||||||||||||||||
Sbjct 299 TGGAAT---AGGAGGAGGAGG---TGGGTCACCTAATGGGTCTGGATTCGGGTCTTTAGG 352
Query 362 AAGAAAAGAAGTGTTGACAACACCAACAAGCCGAGTAAAACGGGCGCTAGGGTTAAAGAT 421
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 353 AAGAAAAGAAGTGGTGACAACACCAACAAGCCGAGTAAAACGGGCGTTAGGGTTAAAGAT 412
Query 422 GCTTAAACGATCTCCTTCTAGGCGAATGTCGACAGTAGGGACAGTTGTAGGGGCCGTCTC 481
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 413 GCTTAAACGATCTCCATCTAGGCGAATGTCGACAGTAGGGACCGTTGTAGGAGCCGTGTC 472
Query 482 AGCTCCTTCATCCCCAGGTAATAATGGAAGCATAGGAAGTGGTTCAGGACACTTTAGCCC 541
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 473 AGCTCCTTCATCCCCTGGTAATAATGGAAGCATAGGAAGTGGTTCAGGACACTTCAGCCC 532
Query 542 TGGGGCTGGGTTTTTTACAGTCCCGCCTGCTCGGCCTCGACGACCGTTAACCTCTGCAGA 601
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 533 TGGGGCTGGGTTTTTTACGGTCCCACCTTCTCGGCCTCGACGACCGTTAACCTCTGCAGA 592
Query 602 AATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACACTCGGCTACGGAAAACCCT 661
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 593 AATCATGAGGCAACAAATGAAGGTGACAGAGCAGAGTGACACTCGGCTTCGGAAAACCCT 652
Query 662 AATGAGGACGCTTGTTGGCCAAACCGGTAGGCGAGCAGAGACAATAATCCTTCCGTTAGA 721
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 653 AATGAGGACGCTTGTTGGCCAAACTGGAAGGCGAGCAGAGACAATAATCCTTCCGTTAGA 712
Query 722 GCTTCTCCGTCACGTGAAACCATCGGAGTTTGGTGATGTACATGAGTATCAAATTTGGCA 781
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCTTCTCCGTCACGTGAAATCATCGGAGTTTGGTGATGTACATGAGTATCAAATTTGGCA 772
Query 782 AAGACGGCAACTCAAAGTCCTTGAAGCTGGTCTTCTCATTCACCCATCAATCCCTCTAGA 841
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 773 AAGACGGCAACTCAAAGTCCTTGAAGCTGGTCTTCTAATCCACCCATCAATCCCTCTTGA 832
Query 842 GAAGACCAACAACTTTGCAATGCGTCTCCGAGAAATCATCCGCCAGAGTGAGACAAAAGC 901
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAAGACCAACAACTCTGCAATGCGTCTCCGAGAAATCATCCGCCAGAGTGAGACAAAAGC 892
Query 902 CATCGACACTAGCAAAAACTCAGACATAATGCCGACATTATGTAACCTTGTCGCCTCCTT 961
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 893 CATCGACACCAGCAAAAACTCAGACATAATGCCGACATTATGTAACATTGTCTCCTCCTT 952
Query 962 GTCATGGCGCAAC-GCTACTCCAACAACCGATATATGCCATTGGGCTGATGGATACCCAC 1020
|||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 953 ATCATGGCGCAACAGC-AATCCAACAACCGATGTATGCCATTGGGCTGATGGATACCCGC 1011
Query 1021 TTAACATCCATCTCTATGTGGCGCTTTTGCAGTCGATATTTGACATACGTGATGAGACCT 1080
|||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1012 TTAATATTCATCTCTATGTGGCGCTTTTGCAGTCGATATTTGACGTACGTGATGAGACAT 1071
Query 1081 TGGTTCTTGATGAAATCGATGAGCTTTTAGAACTGATGAAGAAGACATGGATAATGTTGG 1140
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 1072 TGGTTCTTGATGAGATCGATGAGCTTTTGGAACTGATGAAAAAGACATGGTTAATGTTGG 1131
Query 1141 GGATCACACGAGCTATACATAACTTGTGTTTCACTTGGGTTCTGTTTCATCAGTACATTG 1200
|||| |||||| |||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1132 GGATTACACGACCTATGCATAACCTGTGTTTCACTTGGGTTCTGTTTCATCAATACATTG 1191
Query 1201 TGACATCACAGATGGAGCCAGACTTGCTTGGTGCCTCTCACGCCATGTTGGCTGAAGTTG 1260
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1192 TGACCTCACAGATGGAGCCAGACTTGCTTGGTGCCTCCCACGCCATGTTGGCTGAAGTTG 1251
Query 1261 CCAATGACGCCAAGAAGTCTGATCGCGAGGCTCTTTACGTGAAGCTCTTGACCTCGACAT 1320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CGAATGACGCCAAGAAGTCTGATCGCGAGGCTCTTTACGTGAAGCTCTTGACCTCGACAT 1311
Query 1321 TGGCCTCTATGCAAGGATGGACTGAAAAAAGGTTGTTGAGCTATCATGATTATTTTCAAC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGGCCTCTATGCAAGGATGGACTGAAAAAAGGTTGTTGAGCTATCATGATTATTTTCAAC 1371
Query 1381 GAGGGAACGTGGGATTGATCGAGAATCTTCTGCCATTAGCGTTGTCTTCTTCTAAGATCT 1440
|||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1372 GAGGAAACGTGGGATTGATAGAGAATCTTCTGCCATTGGCGTTGTCTTCGTCTAAGATTT 1431
Query 1441 TGGGGGAGGACGTGACAATCTCTCAAATGAATGGTCTAGAGAAAGGTGATGTGAAATTGG 1500
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1432 TGGGGGAGGACGTGACAATCTCTCAAGGGAATGGTCTAGAGAAAGGTGATGTGAAATTAG 1491
Query 1501 TGGATTCTTCAGGGGATCGCGTCGATTACTATATAAGAGCATCTATTAAAAACGCCTTCT 1560
| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1492 TAGATTCTTCAGGGGATCGTGTTGATTACTATATAAGAGCATCTCTTAAAAACGCCTTCT 1551
Query 1561 CAAAGGTAATAGAAAACATGAAGGCCGAAATCGAAGAAACAGAGGAAGGAGAAGAAGAAG 1620
||||||| ||||||||||||||||||||||||| ||||||||||||| | | ||||||||
Sbjct 1552 CAAAGGTTATAGAAAACATGAAGGCCGAAATCGCAGAAACAGAGGAA-G-G-AGAAGAAG 1608
Query 1621 CGGCAACTATGTTGCTTCGGCTAGCTAAGGAGACAGAGGATCTTGCTTTGCGCGAGAGCG 1680
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1609 CGGCAACTATGTTGCTTCGGCTAGCTAAGGAGACAGAGGAGCTTGCTTTGCGCGAGAGCG 1668
Query 1681 AGTGTTTTAGCCCGATACTTAAGAGATGGCACTTGGTTGCAGCTGGAGTCGCCTCGGTTT 1740
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1669 AGTGTTTTAGCCCTATACTTAAGAGATGGTACTTGGTTGCAGCTGGAGTTGCCTCGGTTT 1728
Query 1741 CGCTTCACCAATGTTATGGTTCCATCTTGATGCAGTACTTAGCTGGTCGATCGACAATCA 1800
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1729 CGCTTCACCAATGTTATGGTTCCATCTTGATGCAATACTTAGCTGGTCGATCGACAATCA 1788
Query 1801 CTAAAGAGACTGTTGAAGTTCTGCAAACTGCGGGGAAGCTCGAAAAGGTTCTTGTGCAGA 1860
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1789 CTAAAGAGACTGTTGAAGTTCTGCAAACGGCGGGGAAGCTCGAGAAGGTTCTTGTGCAGA 1848
Query 1861 TGGTGGCAG-AGAATTCAGATGAATGTGAAGATGGCGGTAAAGGCCTTGTTAGAGAGATG 1919
||||||||| || ||||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 1849 TGGTGGCAGAAG-ATTCAGAGGAATGTGAAGATGGAGGCAAAGGGCTTGTTAGAGAGATG 1907
Query 1920 GTTCCGTATGAAGTCGATTCGATTATCTTACGACTACTAAGGCAATGGATTGAAGAGAAG 1979
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1908 GTTCCGTATGAAATCGATTCGATTATCTTACGACTACTAAGGCAATGGATTGACGAGAAG 1967
Query 1980 TTACAAACAGTTCAAGAATGTTTGAGCAGAGCAAAAGAAGCTGAAACATGGAACCCGAAA 2039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTACAAACAGTTCAAGAATGTTTGAGCAGAGCAAAAGAAGCTGAAACATGGAACCCGAAG 2027
Query 2040 TCAAAATCAGAACCCTATGCACAATCTGCTGGAGAGTTGATGAAGCTAGCGAATGATGCA 2099
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 TCAAAATCAGAACCTTATGCACAATCTGCTGGAGAGTTGATGAAGCTAGCGAATGATGCG 2087
Query 2100 ATCGAGGAGTTCTTTGAGATCCCTATTGGGATTACAGAGGATCTTGTTCATGATCTTGCT 2159
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2088 ATCCAGGAATTCTTTGAGATCCCTATTGGGATTACAGAGGATCTGGTTCATGATCTTGCT 2147
Query 2160 GAAGGATTAGAAAAACTCTTCCAAGAATACACCACATTCGTAGCATCTTGTGGTTCAAAA 2219
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2148 GATGGATTAGAAAAACTCTTCCAAGAATACACCACATTCGTAGCATCTTGTGGTTCAAAA 2207
Query 2220 CAGAGTTACATTCCTACGCTTCCTCCACTTACAAGATGTAACCGAGACTCAAAGTTCGTG 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 CAGAGTTACATTCCTACGCTTCCTCCACTTACAAGATGTAACCGAGACTCAAAGTTCGTG 2267
Query 2280 AAGCTTTGGAAGAAAGCCACGCCATGTGCTGCCTCGGGAGAAGAACTTAACCAAATGGGT 2339
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 2268 AAGCTGTGGAAGAAAGCCACGCCTTGTACTGCCTCGGGAGAAGAACTTAACCAAATTGGT 2327
Query 2340 GAAGCCCCAGGTGGCAACCACCCGCGTCCTTCCACTAGCCGAGGAACCCAACGCCTCTAC 2399
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2328 GAAGCCACAGGTGGCAACCACCCGCGTCCTTCCACCAGCCGCGGAACCCAACGCCTCTAC 2387
Query 2400 ATTCGTCTCAACACTTTACATTTCCTAAGCTCACAACTTCACTCTCTCAACAAATCCCTC 2459
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2388 GTTCGTCTCAACACTTTACATTTCCTAAGCTCTCAACTTCACTCACTCAACAAATCCCTT 2447
Query 2460 TCACTCAACCCGAGGGTCCTCCCCGCGACGCGAAAACGCTGCCGCGAACGGACCAAATCA 2519
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2448 TCTCTCAACCCGAGGGTCCTCCCCGCGACACGTAAACGCTGCCGCGAACGGACCAAATCA 2507
Query 2520 TCGTCTTATTTCGAATTCACTCAAGCAGGAATCGAATCTGCATGCCAACATGTCTCTGAG 2579
|| || |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2508 TCATCGTATTTCGAATTCACTCAAGCGGGAATCGAATCCGCGTGCCAACATGTCTCTGAG 2567
Query 2580 GTTGCAGCTTACCGGTTAATCTTCCTAGACTCATACTCTGTATTCTACGAAAGCCTATAC 2639
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2568 GTTGCAGCTTACCGGTTAATCTTCCTGGACTCATACTCAGTATTCTACGAAAGCCTATAC 2627
Query 2640 CCCGGAGATGTCGCGAACGGGAGGATCAAACCCGCGTTGCGAATCTTGAAACAGAACTTA 2699
||||||||||||| || | |||||||||||| | |||||||||||||||||| ||||||
Sbjct 2628 ACCGGAGATGTCGCTAATGCGAGGATCAAACCAGGGTTGCGAATCTTGAAACATAACTTA 2687
Query 2700 ACGTTAATGACCGCGATTCTTGCGGACAAAGCGCAAGCATTGGCGATGAAAGAAGTCATG 2759
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2688 ACGTTAATGACCGCGATTCTTGCGGACCGAGCGCAAGCGTTGGCGATGAAAGAAGTCATG 2747
Query 2760 AAGGCTTCATTCGAAGTCGTTTTGACGGTTCTTCTCGCGGGAGGACATTCCCGAGTTTTC 2819
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2748 AAGGCTTCATTCGAAGTCGTTTTGACGGTTCTACTCGCGGGAGGAAATTCCCGAGTTTTC 2807
Query 2820 TGTCGAACAGATCACGATTTGATCGAGGAAGATTTCGAGAGTTTGAAGAAGGTTTATTGC 2879
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2808 TATCGAACAGATCACGATTTTATCGAGGAAGATTTCGAGAGTTTAAAGAAGGTTTATTGC 2867
Query 2880 ACTTGCGGCGAAGGACTAATCCCAGAGGAAGTGGTGGATAGAGAGGCAGAGACAGTTGAA 2939
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2868 ACTTGCGGCGAAGGACTAATCCCAGAGGAAGTGGTGGATCGAGAGGCAGAGACAGTTGAG 2927
Query 2940 GGAGTGATTCAGCTTATGGGCCAACCAACAGAACAACTTATGGAAGACTTTAGCATCGTG 2999
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2928 GGAGTGATTCAGCTTATGGGCCAACCAACAGAACAACTTATGGAAGATTTTAGCATCGTG 2987
Query 3000 ACATGCGAGTCAAGCGGAATGGGTTTGGTTGGGACAGGACAAAAACTTCCAATGCCTCCA 3059
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2988 ACATGCGAGTCAAGCGGAATGGGATTGGTCGGGACAGGACAAAAACTTCCAATGCCTCCA 3047
Query 3060 ACGACTGGACGATGGAACAGGTCGGATCCAAACACGATTTTGCGAGTTCTTTGCTATAGA 3119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3048 ACGACTGGACGATGGAACAGGTCGGATCCAAACACGATTTTGCGAGTTCTTTGCTATAGA 3107
Query 3120 GACGATCGTGTGGCTAATCAGTTTTTGAAAAAATCGTTTCAATTGGGTAAACGAAGATGA 3179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3108 GACGATCGTGTCGCTAATCAGTTTTTGAAAAAATCGTTTCAATTGGGTAAACGAAGATGA 3167
Query 3180 CACAAAAGAGAAATAGTCAAAAG-AATGTCATCTCGCTAAGACGTGATCTGTTGTATATT 3238
|||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 3168 CACAAA-GAGAAATAGT-AAAAGGAATGTCATCTCGCTAAGACGTGATCAGTTGTATATT 3225
Query 3239 TTGAGATTAAGATGTTACAGAACCaaa-aaaa-aTTGCTTGTTCATTAGATA 3288
||||||||||||||||||| || ||| |||| |||||||||||||||||||
Sbjct 3226 TTGAGATTAAGATGTTACAAAA--AAAGAAAACATTGCTTGTTCATTAGATA 3275
> Ahg345092 jgi|Araly1|345092|fgenesh1_pg.C_scaffold_4001434
Length=3123
Score = 2115 bits (1145), Expect = 0.0
Identities = 2483/3120 (80%), Gaps = 128/3120 (4%)
Strand=Plus/Plus
Query 124 TTTGTCCTGATACCGATCTTCTTTGGCCATTCGGGAAGCTTGATGGTCTTGATCGGGATG 183
|||||||| ||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 68 TTTGTCCTAATACCGACCTTCTTTGGCCATTTGGGAAGCTTGAAGGGCTTGATCGAGATG 127
Query 184 AAATCCGTGAAACCGCGTATGAGATCTTTTTCGCCGCATGTCGATCATCACCTGGATTTG 243
| || ||||| || || ||||||||||| ||| | || || || |||||||| || ||||
Sbjct 128 ATATTCGTGAGACGGCTTATGAGATCTTCTTCACGGCTTGCCGGTCATCACCGGGTTTTG 187
Query 244 GAGGTAGAAATGCTCTCACATTCTACTCCAAGCACAAT-GCTGGTGACCATCAAGGGGAT 302
||||||| | ||||||||| || ||||| || || ||| || ||||||||| || ||
Sbjct 188 GAGGTAGGACTGCTCTCACGTTTTACTCTAACCATAATAGC-AATGACCATCATGGAGAC 246
Query 303 GGAATAGGAGGAGGAGGAGGATC---TGGATC-A-T-CTAACGGCTCTGGATTCGGGTCT 356
|| |||||||||| ||| || ||| || | | | || ||||| || ||||||
Sbjct 247 GG---AGGAGGAGGAATAGGTTCTGGTGGCTCAACTGGTGTTGGGTCTGGGTTTGGGTCT 303
Query 357 TTAGGAAGAAAAGAAGTGTTGACAACACCAACAAGCCGAGTAAAACGGGCGCTAGGGTTA 416
| ||| || ||||| ||| | || || || |||||||| || |||||||| |||| ||
Sbjct 304 TCAGGGAGGAAAGAGGTGGTCACGACCCCTACAAGCCGGGTTAAACGGGCTTTAGGTTTG 363
Query 417 AAGATGCTTAAACGATCTCCTTCTAGGCGAATGTCGA-CAGTAGGGA-CAGTTGTAGGGG 474
|||||||||||||| ||||| |||||||||||||||| || || ||| | | || ||| |
Sbjct 364 AAGATGCTTAAACGGTCTCCGTCTAGGCGAATGTCGACCA-TA-GGAGCGGCTGGAGGAG 421
Query 475 CCGTCTCAGC-TC-CTTCATCCCCAGGTAATAATGGAAGCATAGGA-AGTGGTTCAGGAC 531
|| | | || | | ||| || || ||| | || | | | | | || ||||
Sbjct 422 -CG--GGAACTTCAC-T-ATCACCTGG------TGGCGGAAT-GAATACTAGCTCGGGAC 469
Query 532 ACT-TTAGCCCTGGGGCTGGGTTTTTTACAGTCCCGCCTGCTCGGCCT-CGACGACCGTT 589
| | |||| ||||| || ||||| || || ||||| ||| |||||||| || |||||||
Sbjct 470 A-TATTAGTCCTGGAGCCGGGTTCTTGACGGTCCCTCCTTCTCGGCCTAGGA-GACCGTT 527
Query 590 AACCTCTGCAGAAATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACACTCGGCT 649
||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 528 GACCTCGGCGGAGATCATGAGGCAGCAAATGAAGGTGACAGAACAGAGTGACAGTCGGCT 587
Query 650 ACGGAAAACCCTAATGAGGACGCTTGTTGGCCAAACCGGTAGGCGAGCAGAGACAATAAT 709
|||||||||||| | || ||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 588 TCGGAAAACCCTATTAAGAACGCTTGTTGGTCAAACGGGTAGACGAGCAGAGACGATAAT 647
Query 710 CCTT-CCGTTAGAGCTTCTCCGTCACGTGAAACCATCGGAGTTTGGTGATGTACATGAGT 768
| || || ||||| || || || ||| ||||| |||||||||||||||||||||||||||
Sbjct 648 C-TTACCATTAGAACTCCTTCGACACTTGAAAACATCGGAGTTTGGTGATGTACATGAGT 706
Query 769 ATCAAATTTGGCAAAGACGGCAACTCAAAGTCCTTGAAGCTGGTCTTCT-CATTCACCCA 827
| || ||||||||||| | ||||| ||||| ||||||||||| ||||| | |||| |||
Sbjct 707 ACCAGGTTTGGCAAAGAAGACAACTAAAAGTTCTTGAAGCTGGCCTTCTTC-TTCATCCA 765
Query 828 TCAATCCCTCTAGAGAAGACCAACAACTTTGCAATGCGTCTCCGAGAAATCATCCGCCAG 887
|| || |||||||| || || |||||||||||||||||||| ||||||| | | ||
Sbjct 766 TCGATTCCTCTAGACAAAACTAACAACTTTGCAATGCGTCTAAGAGAAATTGTTAGACAA 825
Query 888 AGTGAGACAAAAGCCATCGACACTAGCAAAAACTCAGACATAATGCCGA-CATT-ATGTA 945
|| ||||||||| |||| ||||| |||||||||||||||| ||| || || | | |
Sbjct 826 AGCGAGACAAAACCCATTGACACAAGCAAAAACTCAGACACGATGA-GAACACTCACC-A 883
Query 946 ACCTTGTCGCCTCCTTGTCATGGCGCAACGCTACTCCAA-C--AACCGATATATGCCATT 1002
|| |||| | || || || ||||| | ||| | || | ||| ||| | || || |
Sbjct 884 ACGTTGTTGTGTCTTTATCTTGGCGTGGCACTAATGGAAACCCAACTGATGTTTGTCACT 943
Query 1003 GGGCTGATGGATACCCACTTAACATCCATCTCTATGTGGCGCTT-TTGCAGTCGATATTT 1061
||||||| || ||||| || ||||| ||||| ||||| || || |||||||| || |||
Sbjct 944 GGGCTGACGGTTACCCCCTCAACATTCATCTTTATGTTGCT-TTGTTGCAGTCCAT-TTT 1001
Query 1062 -GACAT-ACGTGATGAGACCTTGGTTCTTGATGAAATCGATGAGCTTTTAGAACTGATGA 1119
|| | | | || ||||| ||||| || ||||| |||||||||||| |||| || ||||
Sbjct 1002 CGATGTCA-GAGACGAGACATTGGTGCTGGATGAGATCGATGAGCTTCTAGAGCTAATGA 1060
Query 1120 AGAAGACATGGAT-AATGTTGGGGATCACACGAGCTATACATAA-CTTGTGTTTCACTTG 1177
||||||| ||| | || | |||||||||||| | |||||||| || ||||||||||||
Sbjct 1061 AGAAGACTTGG-TCAACACTAGGGATCACACGACCAATACATAATCT-GTGTTTCACTTG 1118
Query 1178 GGTTCTGTTTCATCAGTACATTGTGACATCACAGATGGAGCCAGACTTGCTTGGTGCCTC 1237
|||| | |||||||||||| | ||||| ||||| ||||| || |||||||| || || ||
Sbjct 1119 GGTTTTATTTCATCAGTACGTCGTGACGTCACAAATGGAACCGGACTTGCTCGGCGCTTC 1178
Query 1238 TCACGCCATGTTGGCTGAAGTTGCCAATGACGCCAAGAAGTCT-GATCGCGAGGCTCTTT 1296
||| || ||||| ||||||||||| |||||||| |||||| || || ||||| ||||| |
Sbjct 1179 TCATGCTATGTTAGCTGAAGTTGCTAATGACGCTAAGAAG-CTTGACCGCGAAGCTCTCT 1237
Query 1297 ACGTGAAGCTCTTGACCTCGACATTGGCCTCTATGCAAGGATGGACTGAAAAAAGGTTGT 1356
| ||||| || || | ||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 1238 ATGTGAAACTATTAAACTCAACATTGGCCTCTATGCAAGGATGGACCGAGAAAAGGTTAT 1297
Query 1357 TGAGCTATCATGATTATTTTCAACGAGGGAACGTGGGATTGATCGAGAATCTTCTGCCAT 1416
||||||| ||||||||||| ||| ||||||| ||||||||||| || |||||||||||||
Sbjct 1298 TGAGCTACCATGATTATTTCCAAAGAGGGAATGTGGGATTGATAGAAAATCTTCTGCCAT 1357
Query 1417 TAGCGTTGTCTTCTTCTAAGA-TCTTGGGGGAGGACGTGACAATCTCTCAAATGAATGGT 1475
| ||||| || || || |||| | ||||| || || |||||||| |||||| ||| ||
Sbjct 1358 TGGCGTTATCATCGTC-AAGAATATTGGGAGAAGATGTGACAATTTCTCAAGGGAAAGGA 1416
Query 1476 CTAGAGAAAGGTGATGTGAAATTGGTGGATTCTTCAGGGGATCGCGTCGATTACTATATA 1535
| ||||||||||||||||||||| ||||||| |||||| |||||||||||||| || |||
Sbjct 1417 CAAGAGAAAGGTGATGTGAAATTAGTGGATTATTCAGGAGATCGCGTCGATTATTACATA 1476
Query 1536 AGAGCATCTATTAAAAACGCCTTCTCAAAGGTAATAGAAAACATGAAGGCCGAA-ATCGA 1594
||| | || ||||||||||| || || ||||| |||||||||| ||| || || ||||
Sbjct 1477 AGATCGTCCATTAAAAACGCATTTTCTAAGGTGATAGAAAACACGAAAGCT-AAGATCGC 1535
Query 1595 AGAAACAGAGGAAGGAGAAGAAGAAGC-GGCAACTATGTTGCTT-CGGCTAGCTAAGGAG 1652
|| ||||| ||||||||||||| || || ||| |||| || | ||||||||||||
Sbjct 1536 AGCTACAGATGAAGGAGAAGAAGCGGCTGG-AAC---GTTG-TTACAGCTAGCTAAGGAA 1590
Query 1653 ACAGAGGATCTT-GCTTTGCGCGAGA-GCGAGTGTTTTAGCCCGATACTTAAGAGATGGC 1710
|||||||| || || || | || | |||| ||||| ||||||||||| ||||||||||
Sbjct 1591 ACAGAGGAG-TTAGCATTAAGGGA-ACGCGAATGTTTCAGCCCGATACTCAAGAGATGGC 1648
Query 1711 ACTTGGTTGCAGCTGGAGTCGCCTCGGTTTCGCTTCACCAATGTTATGGTTCCATCTTGA 1770
||| |||||| ||||| || |||||||| || ||||||||||||||||| || |||||||
Sbjct 1649 ACTCGGTTGCTGCTGGTGTTGCCTCGGTGTCACTTCACCAATGTTATGGCTCGATCTTGA 1708
Query 1771 TGCAGTACTTAGCTGGTCGATCGACAATCACTAAAGAGACTGTTGAAGTTCTGCAAACTG 1830
|||| || || ||||| ||||| ||| | | ||| |||||||| ||| ||||||| |
Sbjct 1709 TGCAATATTTGGCTGGAAGATCGTTTATCTCGAGAGATACTGTTGAGGTTTTGCAAACGG 1768
Query 1831 CGGGGAAGCTCGAAAAGGTTCTTG-TGCAGATGGTGGCAGA-GAATTCAGATGAATGTGA 1888
| ||||||||||||||||| |||| ||||||||||||| || || |||||| ||||| ||
Sbjct 1769 CAGGGAAGCTCGAAAAGGT-CTTGGTGCAGATGGTGGCTGAAGA-TTCAGAGGAATGCGA 1826
Query 1889 AGATGGCGGTAAAGGC-CTTGTTA-GAGAGATGGTTCCGTATGAAGTCGATTCGATTAT- 1945
|| || || ||||| ||||| | ||||||||||||| |||||||||||||| |||||
Sbjct 1827 TGACGGTGG-AAAGGGGCTTGT-ACGAGAGATGGTTCCATATGAAGTCGATTCTATTATA 1884
Query 1946 CTTACGACTACTAAGGCAATGGATTGAAGAGAAGTTACAAACA-GTTCAAGAATGTTTGA 2004
|| || || | || || ||| | ||||| ||| | |||| | |||||||| || || |
Sbjct 1885 CTG-CGTCTTTTGAGACAGTGGGTCGAAGAAAAGCT-CAAAAAAGTTCAAGAGTGCTT-A 1941
Query 2005 GC-AGAGCAAAAGAAGCTGAAACATGGAACCCGAAATCAAAATCAGAACCCTATGCACAA 2063
|||||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1942 TTTAGAGCAAAGGAAACTGAAACATGGAACCCGAAATCCAAATCAGAACCTTACGCACAA 2001
Query 2064 TCTGCTGGAGAGTTGATGAAGCTAGCGAATGATGCAATCGAGGAGTTCTTTGAGATCCCT 2123
|| || |||||||||||||||||||| || || | ||||| |||||||| || ||||||
Sbjct 2002 TCCGCAGGAGAGTTGATGAAGCTAGCTAAGGACACGATCGATGAGTTCTTCGAAATCCCT 2061
Query 2124 ATTGGGATTACAGAGGATCTTGTTCATGATCTTGCTGAAGGATTAGAAAAACTCTTCCAA 2183
|| ||||||||||| ||||||||||||||| | || |||||||| ||| ||||||| |||
Sbjct 2062 ATCGGGATTACAGAAGATCTTGTTCATGATATCGCAGAAGGATTGGAACAACTCTTTCAA 2121
Query 2184 GAATACACCACATTCGTAGCATCTTGTGGTTCAAAACAGAGTTACATTCCTACGCTT-CC 2242
|||||||||||||| || |||||||| || |||| ||| |||||||| ||||| || ||
Sbjct 2122 GAATACACCACATTTGTTGCATCTTGCGGATCAAGACAAAGTTACATCCCTACA-TTACC 2180
Query 2243 TCCACTTACAAGATGTAACCGAGACTCAA-AGTTCGTGAAGCTT-TGGAAGAAAGCCACG 2300
||| ||||| ||||| ||| |||| || | | ||||| ||| || ||||||| ||| |
Sbjct 2181 TCCTCTTACGAGATGCAACAGAGATTCCAGA-TTCGTTAAG-TTATGGAAGAGAGCTGCA 2238
Query 2301 CCATGTGCTGCCTCGGGA-GAAGAACT----TA-ACCAAATGGGTGAAGCCCCAGGTGGC 2354
|| ||| || | || | ||||| | || |||| || || | || | | | |
Sbjct 2239 CCGTGTACTACTTCCA-ACGAAGATTTCAAATACACCACATCTGTCATTTCCGACG-GCC 2296
Query 2355 AACCACCCGCGTCCTTCCACTAGCCGAGGAACCCAACGCCTCTACATTCGTCTCAACACT 2414
| ||| || || || ||||| ||||| || || ||||| || |||||||||||||||||
Sbjct 2297 A-CCATCCACGGCCATCCACAAGCCGCGGGACACAACGTCTATACATTCGTCTCAACACA 2355
Query 2415 TTACATTTCCTAAGCTCACA-ACTTCACTCTCTCAA-CAAATCCCTCTCACTCAACCCGA 2472
||||||||| |||||||||| | | ||||| || || |||| | ||||| | |||||||
Sbjct 2356 TTACATTTCTTAAGCTCACATA-TCCACTC-CTTAAACAAAACACTCTCTTTAAACCCGA 2413
Query 2473 GGGTCCTCCCCGCGACGCGAAAACGCTGCCGCGA-ACGGACCAA-A--TCATCGTCTTAT 2528
|| | || ||||| || |||||||| | |||| | | | | ||| | ||||| ||||||
Sbjct 2414 GGATTCTTCCCGCAACTCGAAAACGTTACCGCCATA-GAAACAACAACTCATCTTCTTAT 2472
Query 2529 TTCGAATTCAC-TCAAGCAGGAATCGAATCTGCATGCCAACATGTCTCTGAGGTTGCAGC 2587
||||| ||||| | | || ||||||||||| || |||||||| || || |||||||||||
Sbjct 2473 TTCGATTTCACAT-ACGCTGGAATCGAATCCGCTTGCCAACACGTTTCAGAGGTTGCAGC 2531
Query 2588 TTACCGGTTAATCTTCCTAGACTC-ATACTCTGTATTCTACGAAAGCCTATACCCCGGAG 2646
|||||| || || ||||| || || | ||||||| |||||||| ||||| ||| ||||
Sbjct 2532 TTACCGTTTGATTTTCCTCGATTCCA-ACTCTGTTTTCTACGAGAGCCTCTACGTAGGAG 2590
Query 2647 ATGTCGCGAACGGGAGGATCAAACCCGCGTTGCGAATCTTGAAACAGAACTTAACGTTAA 2706
| || || |||| |||||||| ||| || || || ||| |||||||||||||||| || |
Sbjct 2591 AAGTTGCAAACGCGAGGATCAGACCAGCTTTACGCATCATGAAACAGAACTTAACATTGA 2650
Query 2707 TGACCGCGATTCTTGCGGACAAAGCGCAAGCATTGGCGATGAAAGAAGTCATGAAGGCTT 2766
|| | |||||||||||||| | ||| ||| |||| ||||||| ||||| ||||| | |
Sbjct 2651 TGTCAGCGATTCTTGCGGATAGAGCTCAATCATTAGCGATGAGGGAAGTTATGAAATCAT 2710
Query 2767 CATTCGAAGTCGTT-TTGACGGTTCTTCTCGCGGGAGGACATTCCCGAGTTTTCTGTCGA 2825
||||||||| |||| |||| ||| || ||||| || ||| | |||||||| |||| | ||
Sbjct 2711 CATTCGAAG-CGTTCTTGATGGTCCTCCTCGCCGGTGGATACTCCCGAGTGTTCTATAGA 2769
Query 2826 ACAGATCAC-GAT-TTGATCGAGGAAGATTTCGAGAGTTTGAAGAAGG-TTTAT-TGCAC 2881
| |||||| | | || ||||| ||||||||||||| ||||| |||| ||| | || ||
Sbjct 2770 TCGGATCACAG-TCTT-ATCGAAGAAGATTTCGAGAACTTGAA-AAGGGTTT-TCTGTAC 2825
Query 2882 TTGCGGCGAAGGACTAATCCCAGAGGAAGTGGTGGATAGAGAGGCAGAGACAGTTGAAGG 2941
||| || ||||| | || || || ||||||||||| ||||||||||||||||| || ||
Sbjct 2826 TTGTGGTGAAGGGTTGATACCTGAAGAAGTGGTGGACAGAGAGGCAGAGACAGTGGAGGG 2885
Query 2942 AGTGATTCAGCTTATGGGCCAACCAACAGAACAACTTATGGAAGACTTTAGCATCGTGAC 3001
|||||| ||||||||| | ||||||||||||||||| |||||||| |||||||| || ||
Sbjct 2886 AGTGATACAGCTTATGAGTCAACCAACAGAACAACTAATGGAAGATTTTAGCATTGTAAC 2945
Query 3002 ATGCGAGTCAAGCGGAATGGGTTTGGTTGGGACAGGACAAAAACTTCCAATGCCTCCAAC 3061
|| ||| |||| |||||||| ||||||| | ||||| || || || |||||||||||
Sbjct 2946 GTGTGAGACAAGTGGAATGGGGATGGTTGGTTCTGGACAGAAGCTACCGATGCCTCCAAC 3005
Query 3062 GACTGGACGATGGAACAGGTCGGATCCAAACACGATTTTGCGAGTTCTTTG-CTATAGAG 3120
|| |||||||||||| |||| ||||| ||||| || ||| | ||| |||| | |||||
Sbjct 3006 TACAGGACGATGGAACCGGTCTGATCCGAACACAATCTTGAGGGTTATTTGTC-ATAGAA 3064
Query 3121 ACGATCGTGTGGCTAATCAGTTTTTGAAA-AAATCGTTTCAATTGGGTAAACGAAGATGA 3179
|||| ||||| ||||||||||| || ||| ||||||||||||||| ||||||||| |||
Sbjct 3065 ACGACCGTGTTGCTAATCAGTTCTT-AAAGAAATCGTTTCAATTGCCTAAACGAAGGTGA 3123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124828839440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5