BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04480.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1 970 0.0
> Ahg470426 jgi|Araly1|470426|fgenesh2_kg.1__380__AT1G04480.1
Length=593
Score = 970 bits (525), Expect = 0.0
Identities = 574/597 (96%), Gaps = 6/597 (1%)
Strand=Plus/Plus
Query 1 TTCAAGCCGTCAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCAAGCCGTCAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGG 60
Query 61 ATGTCACTGGGTCTTCCGGTGGCGGCGACGGTGAACTGTGCCGATAACACCGGTGCTAAG 120
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATGTCACTGGGTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAG 120
Query 121 AATCTCTACATCATTTCCGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCT 180
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCTGTACATCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCT 180
Query 181 TGCGTCGGAGACATGGTGATGGCCACCGTCAAAAAGGGTAAGCCTGATCTCAGGAAAAAG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TGCGTCGGCGACATGGTGATGGCCACCGTCAAAAAGGGTAAGCCTGATCTCCGGAAAAAG 240
Query 241 GTTCTTCCTGCCGTCATCGTTAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTTTTC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTTCTTCCTGCCGTCATCGTCAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTCTTC 300
Query 301 ATGTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCT 360
Query 361 GCAATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCT 420
Query 421 GCCAATGCCATTGTCTAATGATCAGATCAATCAATTGCTTGTATTTGATGGAT-ATGTCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 421 GCCAATGCCATTGTCTAATGATCAGATCAATCAATTGCTTGTATTTGATGGATCA-GTCT 479
Query 480 AGATACAAAT-TTGAGAATTTTGGTAGCAAGATATTTTTATTTTCTGACAATATGTATCT 538
| |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 480 AAATACAA-TCTTGAGAATTTTTGTACCAAGATATTTTTATTTTCTGACAATATGTATCC 538
Query 539 GACATTCAAATGATTTGGCTATTTTGACAATTTTTTCTAAGTTCTTTTCTGTTCTGT 595
|||||| ||||| ||||||||||| |||| ||||| | |||||| ||||||||||||
Sbjct 539 GACATTGAAATGTTTTGGCTATTTAGACA-TTTTTCC-AAGTTCCTTTCTGTTCTGT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5