BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04490.1 Length=1424 Score E Sequences producing significant alignments: (Bits) Value Ahg470427 jgi|Araly1|470427|fgenesh2_kg.1__381__AT1G04490.2 1672 0.0 > Ahg470427 jgi|Araly1|470427|fgenesh2_kg.1__381__AT1G04490.2 Length=1632 Score = 1672 bits (905), Expect = 0.0 Identities = 1280/1451 (88%), Gaps = 65/1451 (4%) Strand=Plus/Plus Query 10 AGAGAAGAGGGAAATTTGTTTATGCTTTAAATTTGGTGAGACTGACGAAAGAATGAGCAA 69 |||| ||||||||| |||||||||||||| ||||||| |||| | | |||||| |||||| Sbjct 139 AGAGTAGAGGGAAACTTGTTTATGCTTTATATTTGGTTAGACAGCCAAAAGAAGGAGCAA 198 Query 70 TAATCCACAAGGAGGATTTTCATCTTAGTCGACAATATTTCGTTG----A----ATCCAG 121 ||||||||||| |||||| ||||||| ||||| |||||||||||| | |||||| Sbjct 199 TAATCCACAAGTAGGATTATCATCTTGGTCGAAAATATTTCGTTGATCCAGTTTATCCAG 258 Query 122 Gt-------tttttttGGTTTCATTTTAAAAAGCTTTGTAAATAATAACACATAATTTAC 174 || |||||| |||||| || |||||||||| |||||| |||| |||||||| | Sbjct 259 GTAAAAAGCATTTTTTCGTTTCAATTAAAAAAGCTTTATAAATATTAACCCATAATTTCC 318 Query 175 AGGAATTCCTGTGGCA-TTTGGCAATAGAGATGGAAGGTCAAACTCATGATGCTCAAAAC 233 | |||||||| ||| | |||| ||| ||||||||| ||| | |||| | ||||||||||| Sbjct 319 A-GAATTCCTCTGGAATTTTGACAACAGAGATGGAGGGTGATACTCCTCATGCTCAAAAC 377 Query 234 AATGTTCCTGAGCATGACAATCCATTGATGAATGTGAAGAATCCATCAAGCAACTTGTTT 293 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| | Sbjct 378 AATGACCCTGAGCACGACAATCCATTGATGAATGTGAACAATCCATCAAGCAACTTGACT 437 Query 294 TCTAAGAAAGATGCACAATGTTTGTCTGTTTTATGCAACGGGAAATGGTTACAGATTGTT 353 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 438 TCTAAGAAAGATGCACAATGTTTGTCGGTTTTATGCAACGGGAAATGGTTACACATTGTT 497 Query 354 AGAAGCAGTCCCAAAGTATCATGTGAGGCCTCTACTTGTCCAAGTCATATTTT-GACCAA 412 |||||||||||||||||||||||||||| |||||||||| |||||||| |||| || ||| Sbjct 498 AGAAGCAGTCCCAAAGTATCATGTGAGGTCTCTACTTGTACAAGTCAT-TTTTCGAGCAA 556 Query 413 AGTAGGAGAAAACTATG-T--GGCTGAATCTGAAAAGATGCATAAAAAGGTAATCTCTTT 469 |||||||||| |||||| | ||||||||| |||||||||||||| |||||||||||||| Sbjct 557 AGTAGGAGAAGACTATGATGCGGCTGAATCCGAAAAGATGCATAACAAGGTAATCTCTTT 616 Query 470 CTCGAGCAAAA-C----C-T-----T-CTCTCAGGGAACCCTTCAATTCACTATGAGAGC 517 ||||| |||| | | | | ||||||||| | ||||||||||||||| ||||| Sbjct 617 ATCGAGTAAAACCTTGTCGTCAGACTACTCTCAGGGCATCCTTCAATTCACTATAAGAGC 676 Query 518 CAATGGAACACCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTTTATGTGGCAAG 577 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 677 CAATGGAACGCCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTATATGTGGCAAG 736 Query 578 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATCTGCAAAGAGGAGAATC 637 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 737 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATTTGCAAAGAGGAGAATC 796 Query 638 ATCAG-CATCCTCATCACATCTAGTTGGGAGAATAAATGTATCTACTTTGTTCTCGGAGA 696 || | |||| |||||| ||| |||||| ||||||||| |||| ||||||||||| |||| Sbjct 797 AT-TGTCATCATCATCATATCCAGTTGGTAGAATAAATATATCGACTTTGTTCTCAGAGA 855 Query 697 AAGTCTTGGAGAGAGAGTTTGTTTTGTTCAGTAGCAATGGTGAGAATCTCAAGATACCGC 756 || |||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 856 AAATCTTAGAGAGACAGTTTGTTTTGTTCAGTAGCAATGGCGAGCATCTCAAGATACCGC 915 Query 757 GTACG-AGGAAAAACAGAGGACTGTCTAAAAAAGTAGTCCATGCGGTCAAGAACGA-AAG 814 ||| | | ||||||||||||| |||||||||| |||||||||| | |||||||||| || Sbjct 916 GTA-GTATGAAAAACAGAGGATTGTCTAAAAATGTAGTCCATGAGATCAAGAACGATAA- 973 Query 815 AAGAA-CAGCAAGATTGAGCAGAACAAGCTTCATACCTGATTTAGGTTCTTGGGATGAGC 873 ||||| | |||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 974 AAGAATC-TCAAGATTGAGCAGAACAAGCTTCATACCTGGTTTAGGTTCTTGGGATCAGC 1032 Query 874 AATTCCAAGCACAAAACTATGA---T-------TG--TCTGCTCA-AAAACAAGCTTCCA 920 ||||||||| || ||||||||| | || |||||| | ||||||| |||||| Sbjct 1033 AATTCCAAGAACCAAACTATGACCTTGAGAAGGTGAATCTGCT-AGAAAACAACCTTCCA 1091 Query 921 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTATTGAGGACGAAATTGGA 980 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1092 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTCTTGAGGAAGAAATTGGA 1151 Query 981 GGATGGGGACTAAAGTTCTTGAAGAGATCTCCCATGTTCCAAAGAAGTAATGATGCTAGT 1040 || |||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| | Sbjct 1152 GGTTGGGGATTAAAGTTCTTGAAGAGATCGCCCATGGTCCAAAGAACTAATGATGCTACT 1211 Query 1041 GAGACTGAAACTTCAACATCTTC-A--ATAAGTATGAATGTTGTGATTCCTTCAGGGATT 1097 |||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||||| Sbjct 1212 GAGACTGAAACTACAACATCTTCGATGATAAGTATGAATGTTGTGATTTCTTCAGGGATT 1271 Query 1098 CATGGAGGGCCTGAAGATGGACCTTCGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAT 1157 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1272 CATGGAGGGCCTGAAGATGGACCTTTGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAC 1331 Query 1158 TGTGACTGTGGAGGATGGGATTTGTGTTGTTCCTTGACCCTTCTTAAAGGCCAACCACGG 1217 |||||||||||||||||||| ||| |||||||| | || ||||||||||||||||||| | Sbjct 1332 TGTGACTGTGGAGGATGGGACTTGGGTTGTTCCCTAACGCTTCTTAAAGGCCAACCACAG 1391 Query 1218 AAAGACCAGTACTTCGAACTATTCATAGAGGGGTCAAAACATGAAACAACAGGACTAAAG 1277 ||||||||| ||||| ||| ||| |||||| ||||| |||||||| | ||| ||||| Sbjct 1392 AAAGACCAG---TTCGAGCTACTCAAAGAGGGTTCAAAGCATGAAACGAGTGGATTAAAG 1448 Query 1278 ATTGTGAATGTTAGTGGAGGACTCTACTTAGTTCAATTCGAAGCAAAGTTGACTAGTCTG 1337 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 1449 ATTGTGAATGTTAGTGGAGGAGTCTACTTAGTTCAATTCGAAGGAAAGTTGACTAGTCTG 1508 Query 1338 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCGAGAAGC--TTAGACCGTTGCATC 1395 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1509 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCCAGAAGCGCTTAGACCGTTGCATC 1568 Query 1396 TATACGTATTT 1406 | ||| ||||| Sbjct 1569 T-TACATATTT 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53250162510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5