BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04490.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470427 jgi|Araly1|470427|fgenesh2_kg.1__381__AT1G04490.2 1672 0.0
> Ahg470427 jgi|Araly1|470427|fgenesh2_kg.1__381__AT1G04490.2
Length=1632
Score = 1672 bits (905), Expect = 0.0
Identities = 1280/1451 (88%), Gaps = 65/1451 (4%)
Strand=Plus/Plus
Query 10 AGAGAAGAGGGAAATTTGTTTATGCTTTAAATTTGGTGAGACTGACGAAAGAATGAGCAA 69
|||| ||||||||| |||||||||||||| ||||||| |||| | | |||||| ||||||
Sbjct 139 AGAGTAGAGGGAAACTTGTTTATGCTTTATATTTGGTTAGACAGCCAAAAGAAGGAGCAA 198
Query 70 TAATCCACAAGGAGGATTTTCATCTTAGTCGACAATATTTCGTTG----A----ATCCAG 121
||||||||||| |||||| ||||||| ||||| |||||||||||| | ||||||
Sbjct 199 TAATCCACAAGTAGGATTATCATCTTGGTCGAAAATATTTCGTTGATCCAGTTTATCCAG 258
Query 122 Gt-------tttttttGGTTTCATTTTAAAAAGCTTTGTAAATAATAACACATAATTTAC 174
|| |||||| |||||| || |||||||||| |||||| |||| |||||||| |
Sbjct 259 GTAAAAAGCATTTTTTCGTTTCAATTAAAAAAGCTTTATAAATATTAACCCATAATTTCC 318
Query 175 AGGAATTCCTGTGGCA-TTTGGCAATAGAGATGGAAGGTCAAACTCATGATGCTCAAAAC 233
| |||||||| ||| | |||| ||| ||||||||| ||| | |||| | |||||||||||
Sbjct 319 A-GAATTCCTCTGGAATTTTGACAACAGAGATGGAGGGTGATACTCCTCATGCTCAAAAC 377
Query 234 AATGTTCCTGAGCATGACAATCCATTGATGAATGTGAAGAATCCATCAAGCAACTTGTTT 293
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 378 AATGACCCTGAGCACGACAATCCATTGATGAATGTGAACAATCCATCAAGCAACTTGACT 437
Query 294 TCTAAGAAAGATGCACAATGTTTGTCTGTTTTATGCAACGGGAAATGGTTACAGATTGTT 353
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 438 TCTAAGAAAGATGCACAATGTTTGTCGGTTTTATGCAACGGGAAATGGTTACACATTGTT 497
Query 354 AGAAGCAGTCCCAAAGTATCATGTGAGGCCTCTACTTGTCCAAGTCATATTTT-GACCAA 412
|||||||||||||||||||||||||||| |||||||||| |||||||| |||| || |||
Sbjct 498 AGAAGCAGTCCCAAAGTATCATGTGAGGTCTCTACTTGTACAAGTCAT-TTTTCGAGCAA 556
Query 413 AGTAGGAGAAAACTATG-T--GGCTGAATCTGAAAAGATGCATAAAAAGGTAATCTCTTT 469
|||||||||| |||||| | ||||||||| |||||||||||||| ||||||||||||||
Sbjct 557 AGTAGGAGAAGACTATGATGCGGCTGAATCCGAAAAGATGCATAACAAGGTAATCTCTTT 616
Query 470 CTCGAGCAAAA-C----C-T-----T-CTCTCAGGGAACCCTTCAATTCACTATGAGAGC 517
||||| |||| | | | | ||||||||| | ||||||||||||||| |||||
Sbjct 617 ATCGAGTAAAACCTTGTCGTCAGACTACTCTCAGGGCATCCTTCAATTCACTATAAGAGC 676
Query 518 CAATGGAACACCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTTTATGTGGCAAG 577
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 677 CAATGGAACGCCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTATATGTGGCAAG 736
Query 578 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATCTGCAAAGAGGAGAATC 637
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 737 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATTTGCAAAGAGGAGAATC 796
Query 638 ATCAG-CATCCTCATCACATCTAGTTGGGAGAATAAATGTATCTACTTTGTTCTCGGAGA 696
|| | |||| |||||| ||| |||||| ||||||||| |||| ||||||||||| ||||
Sbjct 797 AT-TGTCATCATCATCATATCCAGTTGGTAGAATAAATATATCGACTTTGTTCTCAGAGA 855
Query 697 AAGTCTTGGAGAGAGAGTTTGTTTTGTTCAGTAGCAATGGTGAGAATCTCAAGATACCGC 756
|| |||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 856 AAATCTTAGAGAGACAGTTTGTTTTGTTCAGTAGCAATGGCGAGCATCTCAAGATACCGC 915
Query 757 GTACG-AGGAAAAACAGAGGACTGTCTAAAAAAGTAGTCCATGCGGTCAAGAACGA-AAG 814
||| | | ||||||||||||| |||||||||| |||||||||| | |||||||||| ||
Sbjct 916 GTA-GTATGAAAAACAGAGGATTGTCTAAAAATGTAGTCCATGAGATCAAGAACGATAA- 973
Query 815 AAGAA-CAGCAAGATTGAGCAGAACAAGCTTCATACCTGATTTAGGTTCTTGGGATGAGC 873
||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 974 AAGAATC-TCAAGATTGAGCAGAACAAGCTTCATACCTGGTTTAGGTTCTTGGGATCAGC 1032
Query 874 AATTCCAAGCACAAAACTATGA---T-------TG--TCTGCTCA-AAAACAAGCTTCCA 920
||||||||| || ||||||||| | || |||||| | ||||||| ||||||
Sbjct 1033 AATTCCAAGAACCAAACTATGACCTTGAGAAGGTGAATCTGCT-AGAAAACAACCTTCCA 1091
Query 921 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTATTGAGGACGAAATTGGA 980
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1092 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTCTTGAGGAAGAAATTGGA 1151
Query 981 GGATGGGGACTAAAGTTCTTGAAGAGATCTCCCATGTTCCAAAGAAGTAATGATGCTAGT 1040
|| |||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| |
Sbjct 1152 GGTTGGGGATTAAAGTTCTTGAAGAGATCGCCCATGGTCCAAAGAACTAATGATGCTACT 1211
Query 1041 GAGACTGAAACTTCAACATCTTC-A--ATAAGTATGAATGTTGTGATTCCTTCAGGGATT 1097
|||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 1212 GAGACTGAAACTACAACATCTTCGATGATAAGTATGAATGTTGTGATTTCTTCAGGGATT 1271
Query 1098 CATGGAGGGCCTGAAGATGGACCTTCGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAT 1157
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1272 CATGGAGGGCCTGAAGATGGACCTTTGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAC 1331
Query 1158 TGTGACTGTGGAGGATGGGATTTGTGTTGTTCCTTGACCCTTCTTAAAGGCCAACCACGG 1217
|||||||||||||||||||| ||| |||||||| | || ||||||||||||||||||| |
Sbjct 1332 TGTGACTGTGGAGGATGGGACTTGGGTTGTTCCCTAACGCTTCTTAAAGGCCAACCACAG 1391
Query 1218 AAAGACCAGTACTTCGAACTATTCATAGAGGGGTCAAAACATGAAACAACAGGACTAAAG 1277
||||||||| ||||| ||| ||| |||||| ||||| |||||||| | ||| |||||
Sbjct 1392 AAAGACCAG---TTCGAGCTACTCAAAGAGGGTTCAAAGCATGAAACGAGTGGATTAAAG 1448
Query 1278 ATTGTGAATGTTAGTGGAGGACTCTACTTAGTTCAATTCGAAGCAAAGTTGACTAGTCTG 1337
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1449 ATTGTGAATGTTAGTGGAGGAGTCTACTTAGTTCAATTCGAAGGAAAGTTGACTAGTCTG 1508
Query 1338 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCGAGAAGC--TTAGACCGTTGCATC 1395
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1509 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCCAGAAGCGCTTAGACCGTTGCATC 1568
Query 1396 TATACGTATTT 1406
| ||| |||||
Sbjct 1569 T-TACATATTT 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5