BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G04500.1 Length=1616 Score E Sequences producing significant alignments: (Bits) Value Ahg919129 jgi|Araly1|919129|scaffold_100410.1 1975 0.0 Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 470 2e-131 > Ahg919129 jgi|Araly1|919129|scaffold_100410.1 Length=1201 Score = 1975 bits (1069), Expect = 0.0 Identities = 1157/1201 (96%), Gaps = 0/1201 (0%) Strand=Plus/Plus Query 112 ACCATAAAGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCCA 171 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ACCATAACGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCTA 60 Query 172 TGGATGAGATCACAAGTCCTCTCACCGCACAGATCTTCGATTTCTGCGATTCACAGTTAT 231 |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 61 TGGATGAGATCACAAGCCCTCTCACCGCACAAATCTTCGATTTTTGCGATTCACAGTTAT 120 Query 232 TTCAAGAAACCTTCAATCAAACTTCTGAAGTAACCTCTGCTTCAAACGGTTGTGGCTATG 291 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 TTCAAGAAACCTTCAATCAAACTTCTGAAGTGACCTCTGCTTCAAACGGTTGTGGCTATG 180 Query 292 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAAGATC 351 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAGGATC 240 Query 352 ATGAAGACAACAACGACAACGCTGATTTATCAATCATATTCGATTCACAAGATGATTTCG 411 ||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||||| Sbjct 241 GTGATGATAACAACGACAACGCGGACTTATCGATCATATTTGATTCACAAGATGATTTCG 300 Query 412 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGCCTCCGATC 471 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 301 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGTCTCTGATC 360 Query 472 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCACCAGCCTCCGAACACTCTCT 531 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 361 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCATCAGCCTCCGAACGCTCTCT 420 Query 532 ACTCTTCCTCCTCTGGTGACCTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAAGATTGTC 591 ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 421 ACTCTTCCTCCTCCGGTGAACTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAGGATTGTC 480 Query 592 TTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 651 |||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 481 TTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 540 Query 652 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 600 Query 712 GTTTAGGATCTGGTTTTTACTCCGGGAATATCCATCTCGGTTCTGATTTCAAACCATCAC 771 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 601 GTTTAGGATCTGGTTTTTACTCCGGGAGTATCCATCTCGGTTCTGATTTTAAACCATCAC 660 Query 772 ATGATCAATTGATGGAAATTCAAGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 831 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 661 ATGATCAATTGATGGAAATTCAGGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 720 Query 832 AACCCATCTTTAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGTCGAGAACCAGA 891 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 721 AACCCATCTTCAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGGCGAGAACCAGA 780 Query 892 ACCACATGGTGGCACAGCCGGTTCTCCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 951 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 781 ACCACATGGTGGCACAGCCGGTTCTTCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 840 Query 952 ACCCGAGTTTCAACAAAGTCGGAAAACTCTCGGCAGAGCAGAGAAAAGAGAAGATTCATA 1011 ||||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||| Sbjct 841 ACCCGAGTTTCAACAAAGTTGGAAAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATA 900 Query 1012 GGTATATGAAGAAGAGGAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGGA 1071 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 901 GGTACATGAAGAAGAGAAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGAA 960 Query 1072 AGACGTTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1131 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AGACATTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1020 Query 1132 GTGAACCAAATAGACAAGCCTGTTCAAGCCATCATGAAGATGATGATGATGATGTGGGGG 1191 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1021 GTGAACCAAATAGACAAGCTTGTTCAAGCCATCATGAAGAAGATGATGATGATGTGGGGG 1080 Query 1192 TAAAGGAAGAAGAACAGTTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1251 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TAAAGGAAGAAGAACAATTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1140 Query 1252 ACTCTTTCAAATGCAATTATCCAATCCAGTCTTGGATTTGAGTTGGATTACTTACTTGGT 1311 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1141 ACTCTTTCAAATGCAATTATCCAATTCAGTCTTGGATTTGAGTTGGATTACTTACATGGT 1200 Query 1312 C 1312 | Sbjct 1201 C 1201 > Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 Length=1668 Score = 470 bits (254), Expect = 2e-131 Identities = 587/741 (79%), Gaps = 49/741 (7%) Strand=Plus/Plus Query 572 GGTTTTCGAAGAAGATTGTCTTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCC 631 ||||||||||||||||||||||||||| || ||||||||||||||||| | | ||||| Sbjct 699 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG---CTTGAACCC 755 Query 632 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTA-ATACCGGTTTACCGACTTACATGACCGTA 689 ||||| ||||||||| | | ||| | ||||||||||||| || |||| | Sbjct 756 TTCTTGCTCCTTCTT-C-C--------GTACGT-CCGGTTTACCGACGTATATGA--G-C 801 Query 690 ACCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAATATCCA 745 ||| || | | || | | | | || |||| |||| | || | |||||||||| || Sbjct 802 ACC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCA 854 Query 746 TCTCGGTTCTGATTTCAAACCA-TCACATGATCAATTGATGGAAATTCAAGCTGATAATG 804 | | || || || || || | ||||| ||| ||||||||| ||||||||||||||| Sbjct 855 TGTGGGATCAGAAATC-AATAAGCCACATAATCCATTGATGGACTTTCAAGCTGATAATG 913 Query 805 GTGGATTGTTCTGTCC-AGATCCGATTAAACCCATCTTTAATCCAGGAGATCATCATCTC 863 |||| ||||| ||||| | ||| || |||| ||||||||||||| ||||| || | Sbjct 914 GTGGTTTGTTTTGTCCGGGTTCC-ATGAAACGTATCTTTAATCCAGAAGATC-TC--CAG 969 Query 864 CAGGGACTTGACGGTGTCGAGAACCAGAACCACATGGTGGCACAGCCGGTTC-TCCCGCA 922 ||| ||||| || ||||||||||||| | || ||||||||| | || || ||| ||| Sbjct 970 AAGGCACTTGGTGGCGTCGAGAACCAGAGCAACTTGGTGGCACCTCAGGCTCATCCAGCA 1029 Query 923 GTTAGGGAC-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTCGGAAAAC 978 ||||| || | ||||||| ||||||||| || | | | | |||||||| ||||||| Sbjct 1030 -TTAGGAACGGTCGAGATAAACGGTTTAGAAGATTCAACG-ATGAACAAAGTTGGAAAAC 1087 Query 979 TCTCGGCAGAGCAGAGAAAAGAGAAGATTCATAGGTATATGAAGAAGAGGAACGAGAGGA 1038 | || | ||||| || ||||||||||||| |||||| ||||||||||||||||| || | Sbjct 1088 TATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAAAGAA 1147 Query 1039 ATTTCAGCAAGAAAATCAAGTATGCATGTAGGAAGACGTTGGCAGATAGTCGTCCAAGAG 1098 |||||| |||||||||||||||||| |||||||| || |||||||||||||| ||||||| Sbjct 1148 ATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAAACATTGGCAGATAGTCGACCAAGAG 1207 Query 1099 TTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCCTGTTCAA 1158 |||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||| Sbjct 1208 TTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGAACCAAATAGACAGGCTTTTTCAA 1267 Query 1159 GCCATCATGAAGATGATGATGATGATG-TG-GGG-GTAAAGGAAGAAGAACAGTTAGTTG 1215 ||||||| || ||||| ||||| || | | ||| || ||||| || ||||| || || | Sbjct 1268 GCCATCACGATGATGAAGATGAAGAAGATATGGGAGTGAAGGATGAGGAACAATTGGTAG 1327 Query 1216 ATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATTATCCA 1274 ||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| || ||| Sbjct 1328 ATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCCAATTCCTTCAAGTGCAACTACCCA 1386 Query 1275 ATCCAGTCTTGGATTTGAGTT 1295 ||||| ||||||||||||||| Sbjct 1387 ATCCAATCTTGGATTTGAGTT 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60563489550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5