BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04500.1
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919129 jgi|Araly1|919129|scaffold_100410.1 1975 0.0
Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1 470 2e-131
> Ahg919129 jgi|Araly1|919129|scaffold_100410.1
Length=1201
Score = 1975 bits (1069), Expect = 0.0
Identities = 1157/1201 (96%), Gaps = 0/1201 (0%)
Strand=Plus/Plus
Query 112 ACCATAAAGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCCA 171
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ACCATAACGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCTA 60
Query 172 TGGATGAGATCACAAGTCCTCTCACCGCACAGATCTTCGATTTCTGCGATTCACAGTTAT 231
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 61 TGGATGAGATCACAAGCCCTCTCACCGCACAAATCTTCGATTTTTGCGATTCACAGTTAT 120
Query 232 TTCAAGAAACCTTCAATCAAACTTCTGAAGTAACCTCTGCTTCAAACGGTTGTGGCTATG 291
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTCAAGAAACCTTCAATCAAACTTCTGAAGTGACCTCTGCTTCAAACGGTTGTGGCTATG 180
Query 292 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAAGATC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAGGATC 240
Query 352 ATGAAGACAACAACGACAACGCTGATTTATCAATCATATTCGATTCACAAGATGATTTCG 411
||| || |||||||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct 241 GTGATGATAACAACGACAACGCGGACTTATCGATCATATTTGATTCACAAGATGATTTCG 300
Query 412 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGCCTCCGATC 471
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 301 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGTCTCTGATC 360
Query 472 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCACCAGCCTCCGAACACTCTCT 531
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 361 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCATCAGCCTCCGAACGCTCTCT 420
Query 532 ACTCTTCCTCCTCTGGTGACCTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAAGATTGTC 591
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 421 ACTCTTCCTCCTCCGGTGAACTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAGGATTGTC 480
Query 592 TTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 651
|||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 TTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 540
Query 652 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 600
Query 712 GTTTAGGATCTGGTTTTTACTCCGGGAATATCCATCTCGGTTCTGATTTCAAACCATCAC 771
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 601 GTTTAGGATCTGGTTTTTACTCCGGGAGTATCCATCTCGGTTCTGATTTTAAACCATCAC 660
Query 772 ATGATCAATTGATGGAAATTCAAGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 831
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGATCAATTGATGGAAATTCAGGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 720
Query 832 AACCCATCTTTAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGTCGAGAACCAGA 891
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 AACCCATCTTCAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGGCGAGAACCAGA 780
Query 892 ACCACATGGTGGCACAGCCGGTTCTCCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 951
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 ACCACATGGTGGCACAGCCGGTTCTTCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 840
Query 952 ACCCGAGTTTCAACAAAGTCGGAAAACTCTCGGCAGAGCAGAGAAAAGAGAAGATTCATA 1011
||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 841 ACCCGAGTTTCAACAAAGTTGGAAAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATA 900
Query 1012 GGTATATGAAGAAGAGGAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGGA 1071
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 GGTACATGAAGAAGAGAAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGAA 960
Query 1072 AGACGTTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1131
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGACATTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1020
Query 1132 GTGAACCAAATAGACAAGCCTGTTCAAGCCATCATGAAGATGATGATGATGATGTGGGGG 1191
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 GTGAACCAAATAGACAAGCTTGTTCAAGCCATCATGAAGAAGATGATGATGATGTGGGGG 1080
Query 1192 TAAAGGAAGAAGAACAGTTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1251
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TAAAGGAAGAAGAACAATTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1140
Query 1252 ACTCTTTCAAATGCAATTATCCAATCCAGTCTTGGATTTGAGTTGGATTACTTACTTGGT 1311
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1141 ACTCTTTCAAATGCAATTATCCAATTCAGTCTTGGATTTGAGTTGGATTACTTACATGGT 1200
Query 1312 C 1312
|
Sbjct 1201 C 1201
> Ahg482277 jgi|Araly1|482277|fgenesh2_kg.4__1337__AT2G33350.1
Length=1668
Score = 470 bits (254), Expect = 2e-131
Identities = 587/741 (79%), Gaps = 49/741 (7%)
Strand=Plus/Plus
Query 572 GGTTTTCGAAGAAGATTGTCTTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCC 631
||||||||||||||||||||||||||| || ||||||||||||||||| | | |||||
Sbjct 699 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG---CTTGAACCC 755
Query 632 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTA-ATACCGGTTTACCGACTTACATGACCGTA 689
||||| ||||||||| | | ||| | ||||||||||||| || |||| |
Sbjct 756 TTCTTGCTCCTTCTT-C-C--------GTACGT-CCGGTTTACCGACGTATATGA--G-C 801
Query 690 ACCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAATATCCA 745
||| || | | || | | | | || |||| |||| | || | |||||||||| ||
Sbjct 802 ACC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCA 854
Query 746 TCTCGGTTCTGATTTCAAACCA-TCACATGATCAATTGATGGAAATTCAAGCTGATAATG 804
| | || || || || || | ||||| ||| ||||||||| |||||||||||||||
Sbjct 855 TGTGGGATCAGAAATC-AATAAGCCACATAATCCATTGATGGACTTTCAAGCTGATAATG 913
Query 805 GTGGATTGTTCTGTCC-AGATCCGATTAAACCCATCTTTAATCCAGGAGATCATCATCTC 863
|||| ||||| ||||| | ||| || |||| ||||||||||||| ||||| || |
Sbjct 914 GTGGTTTGTTTTGTCCGGGTTCC-ATGAAACGTATCTTTAATCCAGAAGATC-TC--CAG 969
Query 864 CAGGGACTTGACGGTGTCGAGAACCAGAACCACATGGTGGCACAGCCGGTTC-TCCCGCA 922
||| ||||| || ||||||||||||| | || ||||||||| | || || ||| |||
Sbjct 970 AAGGCACTTGGTGGCGTCGAGAACCAGAGCAACTTGGTGGCACCTCAGGCTCATCCAGCA 1029
Query 923 GTTAGGGAC-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTCGGAAAAC 978
||||| || | ||||||| ||||||||| || | | | | |||||||| |||||||
Sbjct 1030 -TTAGGAACGGTCGAGATAAACGGTTTAGAAGATTCAACG-ATGAACAAAGTTGGAAAAC 1087
Query 979 TCTCGGCAGAGCAGAGAAAAGAGAAGATTCATAGGTATATGAAGAAGAGGAACGAGAGGA 1038
| || | ||||| || ||||||||||||| |||||| ||||||||||||||||| || |
Sbjct 1088 TATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAAAGAA 1147
Query 1039 ATTTCAGCAAGAAAATCAAGTATGCATGTAGGAAGACGTTGGCAGATAGTCGTCCAAGAG 1098
|||||| |||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct 1148 ATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAAACATTGGCAGATAGTCGACCAAGAG 1207
Query 1099 TTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCCTGTTCAA 1158
|||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||
Sbjct 1208 TTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGAACCAAATAGACAGGCTTTTTCAA 1267
Query 1159 GCCATCATGAAGATGATGATGATGATG-TG-GGG-GTAAAGGAAGAAGAACAGTTAGTTG 1215
||||||| || ||||| ||||| || | | ||| || ||||| || ||||| || || |
Sbjct 1268 GCCATCACGATGATGAAGATGAAGAAGATATGGGAGTGAAGGATGAGGAACAATTGGTAG 1327
Query 1216 ATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATTATCCA 1274
||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| || |||
Sbjct 1328 ATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCCAATTCCTTCAAGTGCAACTACCCA 1386
Query 1275 ATCCAGTCTTGGATTTGAGTT 1295
||||| |||||||||||||||
Sbjct 1387 ATCCAATCTTGGATTTGAGTT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60563489550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5