BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04510.1
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919131 jgi|Araly1|919131|scaffold_100412.1 2654 0.0
Ahg482274 jgi|Araly1|482274|fgenesh2_kg.4__1334__AT2G33340.1 1450 0.0
> Ahg919131 jgi|Araly1|919131|scaffold_100412.1
Length=1617
Score = 2654 bits (1437), Expect = 0.0
Identities = 1557/1615 (96%), Gaps = 7/1615 (0%)
Strand=Plus/Plus
Query 147 CTTCTTCTTCTTCGTTTATACTTAGAAGATGAATTGTGCAATTTCCGGCGAAGTTCCGGA 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCTTCGTTTATACTTCGAAGATGAATTGTGCAATTTCCGGCGAAGTTCCGGA 60
Query 207 GGAGCCTGTGGTTTCTAAGAAGTCGGGTTTGCTTTACGAGAAGCGGCTAATCCAGACGCA 266
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 61 GGAGCCTGTGGTTTCTAAGAAGTCGGGTTTGCTCTACGAGAAGCGGCTAATCGAGAGGCA 120
Query 267 TATATCCGATTATGGGAAATGCCCGGTTACTGGTGAGCCACATACTCTTGATGACATTGT 326
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TATATCGGATTATGGGAAATGCCCGGTTACTGGTGAACCACATACTCTTGATGACATTGT 180
Query 327 TCCCATCAAAACTGGGAAGATCGTAAAGCCGAAACCATTACACACAGCTAGCATCCCTGG 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCATCAAAACTGGGAAGATCGTAAAGCCGAAACCATTACACACAGCTAGCATCCCTGG 240
Query 387 ATTGCTTGGAACGTTTCAGACTGAATGGGACAGTTTGATGCTATCAAATTTTGCTTTGGA 446
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 ATTGCTCGGAACGTTCCAGACTGAATGGGACAGTTTGATGCTATCAAATTTTGCACTGGA 300
Query 447 ACAACAACTGCATACTGCGAGGCAAGAGCTAAGTCACGCTTTGTATCAGCATGATGCTGC 506
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 ACAACAACTGCATACTGCTAGGCAAGAGCTAAGTCATGCTTTGTATCAGCATGATGCTGC 360
Query 507 TTGTCGTGTGATTGCTAGGCTTAAAAAAGAAAGAGACGAATCACGACAATTGCTTGCAGA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGTCGTGTGATTGCTAGGCTTAAAAAAGAAAGAGACGAATCACGACAATTGCTTGCAGA 420
Query 567 GGCTGAAAGGCAGTTGCCTGCAGCCCCCGAAGTTGCCACATCGAATGCTGCTCTTAGTAA 626
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCTGAAAGGCAGTTACCTGCAGCCCCCGAAGTTGCCACATCGAATGCTGCTCTTAGTAA 480
Query 627 TGGTAAACGAGGTATCGATGATGGTGAGCAGGGGCCTAATGCAAAGAAAATGCGTCTTGG 686
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 TGGTAAACGAGGTATCGATGATGGTGAGCAGGGGCCCGATGCAAAGAAAATGCGTCTTGG 540
Query 687 AATTTCGGCTGAAGTTATCACAGAACTCACAGATTGTAATGCTGCTCTTTCTCAGCAGCG 746
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 541 AATTTCGGCTGAAGTTATCACAGAACTGACGGATTGTAATGCTGCTCTTTCTCAGCAACG 600
Query 747 TAAAAAGAGACAGATCCCTAAAACATTGGCTTCAGTCGATGCTCTGGAGAAGTTCACCCA 806
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 601 TAAAAAGAGACAGATCCCTAAAACATTGGCTTCAATTGATGCTCTGGAGAAGTTCACCCA 660
Query 807 ACTCTCAAGCCACCCCCTTCACAAGACCAACAAACCTGGAATTTTTTCAATGGACATCCT 866
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 ACTCTCAAGCCACCCACTTCACAAGACCAACAAACCTGGTATTTTTTCAATGGACATCCT 720
Query 867 ACATTCTAAGGATGTCATCGCTAC-GGGAGGAATTGATACAACTGCCGTTCTCTTTGATC 925
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 721 ACATTCTAAGGATGTCATCGCTACAGGG-GGAATTGATACAACTGCCGTTCTCTTTGATC 779
Query 926 GTCCTTCAGGACAAATCTTATCAACGCTGACTGGTCACTCAAAGAAGGTTACAAGCATCA 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 GTCCTTCAGGACAAATCTTATCAACGCTGACTGGTCACTCAAAGAAGGTTACAAGCATTA 839
Query 986 AGTTCGTTGGTGACACTGATCTTGTGTTAACTGCTTCATCCGACAAGACAGTCCGCATCT 1045
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 840 AGTTTGTTGGTGACACTGATCTTGTGTTAACTGCTTCATCAGACAAAACAGTCCGCATCT 899
Query 1046 GGGGATGTTCCGAGGATGGGAACTATACCTCTAGACATACACTGAAAGATCATTCTGCCG 1105
||||| |||| ||||||||||||||||||| |||||||||| |||||||||| ||||| |
Sbjct 900 GGGGAAGTTCTGAGGATGGGAACTATACCTGTAGACATACATTGAAAGATCACTCTGCAG 959
Query 1106 AGGTGCGAGCTGTAACTGTCCACGCAACGAATAAATACTTTGTGTCAGCATCACTTGACA 1165
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 AGGTGCGAGCTGTAACTGTCCACGCAACGAATAAATACTTTGTGTCAGCATCTCTTGACA 1019
Query 1166 GTACATGGTGCTTCTATGATCTGTCCTCCGGTTTATGCCTTGCTCAGGTGACAGATGCTT 1225
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 GTACATGGTGCTTCTATGATCTGTCCTCCGGTTTATGCCTTGCCCAGGTGACAGATGCTT 1079
Query 1226 CCGAAAACGACGTGAATTACACGGCTGCTGCTTTTCATCCTGATGGTCTCATTCTTGGAA 1285
||||||| | | || |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1080 CCGAAAATGT-G-GA-TTACACGGCTGCTGCTTTTCATCCCGACGGTCTCATTCTTGGAA 1136
Query 1286 CTGGTACCGCTCAATCTATTGTTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAA 1345
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTGGTACTGCTCAATCTATTGTTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAA 1196
Query 1346 AGTTTGGTGGACACAATGGAGAAATCACCTCTATATCATTCTCTGAAAACGGTTATTTCC 1405
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGTTTGGCGGACACACTGGAGAAATCACCTCTATATCATTCTCTGAAAACGGTTATTTCC 1256
Query 1406 TTGCGACTGCTGCACTGGATGGTGTTAGGTTGTGGGACTTGCGCAAGTTAAAGAACTTCC 1465
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTGCGACTGCTGCACAGGATGGTGTTAGGTTGTGGGACTTGCGCAAGTTAAAGAACTTCC 1316
Query 1466 GAACCTTTGACTTTCCAGATGCAAACTCGGTGGAGTTTGACCATAGCGGATCTTATCTTG 1525
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1317 GAACATTTGACTTTCCAGATGCAAACTCGGTGGAGTTCGACCATAGTGGATCTTATCTTG 1376
Query 1526 GCATTGCTGCTTCAGATATAAGAGTATTCCAAGCAGCTAGTGTAAAAGCAGAATGGAACC 1585
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1377 GCATTGCTGCTTCAGATATAAGAGTATTCCAAACAGCTAGTGTAAAAGCAGAATGGAACC 1436
Query 1586 CAATCAAGACTCTTCCCGATCTGTCCGGTACAGGTAAAGCAACAAGTGTTAAGTTTGGAC 1645
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1437 CAATCAAGACTCTTCCCGATCTGTCCGGTACAGGTAAAGCAACATGTGTTAAGTTTGGAC 1496
Query 1646 TCGACTCCAAATACATAGCAGTCGGTTCAATGGACCGTAATCTCAGGATATTTGGTTTAC 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCGACTCCAAATACATAGCAGTCGGTTCAATGGACCGTAATCTCAGGATATTTGGTTTAC 1556
Query 1706 CTGATGATGACAATACTGAAGATTCAGCACAAGATTCATGAAGAGATATC-TCAA 1759
| | |||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1557 CCGGCGATGACAATACTGAAGATTCTGCACAAGATTCATGAAGAGAT-TCCTCAA 1610
> Ahg482274 jgi|Araly1|482274|fgenesh2_kg.4__1334__AT2G33340.1
Length=1945
Score = 1450 bits (785), Expect = 0.0
Identities = 1256/1482 (85%), Gaps = 37/1482 (2%)
Strand=Plus/Plus
Query 174 GATGAATTGTGCAATTTCCGGCGAAGTTCCGGAGGAGCCTGTGGTTTCTAAGAAGTCGGG 233
|||||| |||||||||||||| |||||||| ||||||| |||||||| | ||||| ||
Sbjct 131 GATGAACTGTGCAATTTCCGGAGAAGTTCCCAAGGAGCCAGTGGTTTCGACCAAGTCAGG 190
Query 234 TTTGCT-TTACGAGAAG-CGGCTAATCCAGACGCATATATCCGATTATGGGAAATGCCCG 291
|||||| || |||| || || ||||| | | ||||||||| ||||||||||| |||||
Sbjct 191 TTTGCTCTT-CGAG-AGACGATTAATCGAAAGGCATATATCGGATTATGGGAAGTGCCCT 248
Query 292 GTTACTGGTGAGCCACATACTC-TTGATGACATTGTTCCCATCAAAACTGGGAAGATCGT 350
|||||||| || |||| ||| | ||||||||||||||||||||||||||||| ||||| |
Sbjct 249 GTTACTGGCGAACCACTTAC-CATTGATGACATTGTTCCCATCAAAACTGGGGAGATCAT 307
Query 351 AAAGCCGAAACCATTACACACAGCTAGCATCCCTGGATTGCTTGGAACGTTTCAGACTGA 410
|||||||||| |||| || ||||||||||||||||||||||| |||||||| |||| |||
Sbjct 308 AAAGCCGAAAACATTGCATACAGCTAGCATCCCTGGATTGCTCGGAACGTTCCAGAATGA 367
Query 411 ATGGGACAGTTTGATGCTATCAAATTTTGCTTTGGAACAACAACTGCATACTGCGAGGCA 470
||||||| |||||||||||||||||||||| |||| |||||||| |||||||| |||||
Sbjct 368 ATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACTGCAAGGCA 427
Query 471 AGAGCTAAGTCACGCTTTGTATCAGCATGATGCTGCTTGTCGTGTGATTGCTAGGCTTAA 530
|||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 428 AGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCTAGACTCAA 487
Query 531 AAAAGAAAGAGACGAATCACGACAATTGCTTGCAGAGGCTGAAAGG-CAGT-TGCCTGCA 588
|||||||||||||||| |||| ||||| |||||||||| ||||| | || | | |||||
Sbjct 488 AAAAGAAAGAGACGAAGCACGCCAATTACTTGCAGAGG-TGAAAAGACA-TATACCTGCG 545
Query 589 GCCCCCGAAGTTGCCACATCGAATGCTGCTCTTAGTAATGGTAAACGAGGTATCGATGAT 648
||||| |||| || ||| | ||||||||||| |||||||||||||||| | || ||||
Sbjct 546 GCCCCAGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGCCGGTGAT 605
Query 649 GGTGAGCAGGGGCCTAATGCAAAGAAAATGCGTCTTGGAATTTCGGCTGAAGTTATCACA 708
| || | ||| ||||||||||||||| | ||| ||||||||| |||||| |||| ||
Sbjct 606 GAAGAACTGGGTCCTAATGCAAAGAAATTATGTCCTGGAATTTCTGCTGAAATTATTACG 665
Query 709 GAACTCACAGATTGTAATGCTGCTCTTTCTCAGCAGCGTAAAAAGAGACAGATCCCTAAA 768
||| | || |||||||||||||||||||| ||| ||||||||||| ||||||| || ||
Sbjct 666 GAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGTAAAAAGCGACAGATTTCTCAA 725
Query 769 ACATTGGCTTCAGTCGATGCTCTGGAGAAGTTCACCCAACTCTCAAGCCACCCCCTTCAC 828
|||||||||||| | |||||| |||||| |||||| || || ||||||||||| ||||||
Sbjct 726 ACATTGGCTTCAATAGATGCTTTGGAGAGGTTCACTCAGCTATCAAGCCACCCACTTCAC 785
Query 829 AAGACCAACAAACCTGGAATTTTTTCAATGGACATCCTACATTCTAAGGATGTCATCGCT 888
|||||||||||||| || |||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 786 AAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGTCATTGCT 845
Query 889 ACGGGAGGAATTGATACAACTGCCGTTCTCTTTGATCGTCCTTCAGGACAAATCTTATCA 948
|| |||||| ||||| | ||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 846 ACTGGAGGAGTTGATGCGACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAATCTTGTCA 905
Query 949 ACGCTGACTGGTCACTCAAAGAAGGTTACAAGCATCAAGTTCGTTGGTGACACTGATCTT 1008
|| |||||||||||||| ||||||||||||||| | || || || || ||| ||||||||
Sbjct 906 ACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACGCTGATCTT 965
Query 1009 GTGTTAACTGCTTCATCC-GACAAGACAGTCCGCATCTGG-GGATGTTCC-GAGGATGGG 1065
|| || |||||||| | | |||||||||||||| |||||| ||| | || | |||||||
Sbjct 966 GTTTTGACTGCTTC-TGCTGACAAGACAGTCCGTATCTGGCGGAA-T-CCTGGGGATGGG 1022
Query 1066 AACTATACCTCTAGACATACACTGAAAGATCATTCTGCCGAGGTGCGAGCTGTAACTGTC 1125
|||||| | | | | |||||| |||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1023 AACTATGCTTGTGGGCATACATTGAATGATCACTCTGCAGAGGTGCGAGCCGTAACTGTG 1082
Query 1126 CA-CGCAACGAATAAATACTTTGTGTCAGCATCACTTGACAGTACATGGTGCTTCTATGA 1184
|| | || | ||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1083 CATCCCA-CAAATAAATACTTTGTGTCGGCATCTCTTGATAGTACATGGTGCTTCTATGA 1141
Query 1185 TCTGTCCTCCGGTTTATGCCTTGCTCAGGTGA-CAGATGCTTCCGAAAACGACGTGAATT 1243
||||||||| || | ||||||||| ||||| | |||||| || || || | | || ||
Sbjct 1142 TCTGTCCTCTGGCTCATGCCTTGCACAGGT-ATCAGATGGATCAGAGAATG-CA-GA-TT 1197
Query 1244 ACACGGCTGCTGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGTACCGCTCAATCTA 1303
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 1198 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1257
Query 1304 TTGTTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAAAGTTTGGTGGACACAATG 1363
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1258 TTGTTAAGATTTGGGATGTTAAAAGTCAGGCAAATGTGGCAAAGTTTGATGGACACACTG 1317
Query 1364 GAGAAATCACCTCTATATCATTCTCTGAAAACGGTTATTTCCTTGCGACTGCTGCACT-G 1422
| ||| | || ||||||| ||||||||||| ||||| ||||| ||||| ||||| | |
Sbjct 1318 GCGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACGGCTGC-CGAG 1376
Query 1423 GATGGTGTTAGGTTGTGGGA-CTTGCGCAAGTTAAAGAACTTCC-GA-ACCTTTGACTTT 1479
|||||||||||||||||||| || ||||||||||| ||||||| | | ||| | | |
Sbjct 1377 GATGGTGTTAGGTTGTGGGATCT-GCGCAAGTTAAGGAACTTCAAGTCATTTTT-A-TCT 1433
Query 1480 CCAGATGCAAACTCGGTGGAGTTTGA-CCATAGCGGATCTTATCTTGGCATTGCTGCTTC 1538
||||||| ||||| ||||||||||| || ||||||||||||||| || |||||||| ||
Sbjct 1434 GCAGATGCGAACTCTGTGGAGTTTGATCC-TAGCGGATCTTATCTCGGTATTGCTGCATC 1492
Query 1539 AGATATAAGAGTATTCCA-AGCAGCTAGTGTAAAAGCAGAATGGAACCCAATCAAGACTC 1597
|||||| ||||||| ||| | | || ||||| ||||| |||||||||| |||||||| |
Sbjct 1493 AGATATCAGAGTATACCAGA-CGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACAC 1551
Query 1598 TTCCC-GATCTGTCCGGTACAGGTAAAGCAACAAGTGTTAAG 1638
| ||| ||||| ||||| || |||||||| || |||| |||
Sbjct 1552 T-CCCAGATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74466428975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5