BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04520.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470432 jgi|Araly1|470432|fgenesh2_kg.1__386__AT1G04520.1 1873 0.0
Ahg901152 jgi|Araly1|901152|Al_scaffold_0004_1802 767 0.0
> Ahg470432 jgi|Araly1|470432|fgenesh2_kg.1__386__AT1G04520.1
Length=1411
Score = 1873 bits (1014), Expect = 0.0
Identities = 1125/1179 (95%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 271 AAAAATGGGTCTTTCAATCTCATTCCTCAGCATCATCATGATGATGTGTCTACTGTTTCC 330
||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||
Sbjct 233 AAAAATGGGTCTTTCAATCTCATTCCTCAACATCATCTTGATGATGTCTCTGCTGTTTCC 292
Query 331 AGATCTCAATGTCGTAGTAAAATCTGCTACAACGGAATACACAACCTTAATCTACAAAGG 390
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 293 AGATCTCAATGTCGTAGTAGAATCTGCAACAACGGAATACACAACCTTAATCTACAAAGG 352
Query 391 ATGTGCAAGACAACAATTCTCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCTAT 450
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATGTGCAAGACAGCAATTCTCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCTAT 412
Query 451 GTTCGGCTCATTGGTCTCTCAGTCTACTAAAACCAGATTCTACAAGACCACAACAGGAAC 510
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 413 GTTCGGCTCATTGGTCTCGCAGTCTACTAAAACCAGATTCTACAAGACCACAACGGGAAC 472
Query 511 AAGCACAACCACAATCACTGGTCTGTTCCAGTGTAGAGGAGATTTAAGTAACCATGACTG 570
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 473 AAGCACAACTACAATCACTGGTCTGTTCCAGTGCAGAGGAGATTTAAGCAACCATGACTG 532
Query 571 TTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCTATGTGGCAAAACCATTGC 630
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 TTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCTCTGTGGCAAAACCATTGC 592
Query 631 TTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGTTTCTGGCTTTTCTCAAAT 690
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 593 TTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGTTGCTGGCTTTTCTCAAAT 652
Query 691 TTCAGGGATGGAGATGCTGTTCAAGACTTGTGGGAAGAACAACATCGCCGGAACAGGGTT 750
|||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||||
Sbjct 653 TTCAGGGATGGAGATGTTGTTCAAGACCTGCGGGAAGAGCAACATCGCCGGAACAGGGTT 712
Query 751 CGAAGAGAGAAGAGACACGGCGTTCGGGGTGATGCAAAACGGCGTAGTATCAGGCCATGG 810
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 713 CGAAGAGAGAAGAGACACGGCGTTTGGGGTGATGCAAAACGGCGTAGTATCAGGCCATGG 772
Query 811 ATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGGACAATGCGAAGGAGATGTCGG 870
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 773 ATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGGACAATGCGAAGGCGATGTCGG 832
Query 871 AGACACCGATTGTAGCGGATGTGTTAAGAACGCACTTGAGAAAGCTCAGGTGGAATGTGG 930
|||||||||||| |||||||| | || || ||||| |||||||||||||||||||||||
Sbjct 833 AGACACCGATTGCAGCGGATGCATAAAAAATGCACTCGAGAAAGCTCAGGTGGAATGTGG 892
Query 931 AAGCTCAATCTCCGGACAGATTTATCTACATAAGTGTTTCATCGCTTATAGTTATTACCC 990
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 893 AAGCTCAATCTCCGGTCAGATTTACCTCCATAAGTGTTTCATCGCTTATAGTTATTACCC 952
Query 991 AAATGGTGTCCCCAGAAGatcttcttcttcttcatcttcgtcttcatcctccagttctgg 1050
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 953 AAATGGTGTCCCCAGGAGATCTTCTTCTTCTTCATCTTCGTCTTCTTCCTCCAGCTCTGG 1012
Query 1051 ctcttcaaattcagatccttccACTTCTACAGGAGCAACAGGGAAGACGGTGGCAATAAT 1110
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTCTTCAAATTCAGATCCTTCGTCTTCTACAGGAGCAACAGGGAAGACGGTGGCAATAAT 1072
Query 1111 AGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATTTGCTTGCTTTTTGCCAAAAACTT 1170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1073 AGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATTTGCTTACTTTTTGCCAAAAACTT 1132
Query 1171 GATGAGGAAGAAACATGACGACTATTGAAAGATGGAGAGGAAGAGAACAAAAGGAGTCCA 1230
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1133 GATGAGGAAGAAACATGACGACTATTGAAAGATGGAGGGGAAGAGAACAAAAGGTGTCCA 1192
Query 1231 ATCCCTCATGAGATAGGCACAAGTTTAATTTTTCTCTCTTTGAGGCTATTAATTTCCAAG 1290
||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1193 ATCCCTCATAAGAGAGGCACAAGTTTAATTTTTCTTTCTTTGAGGCTATTAATTCCCAAG 1252
Query 1291 TCCAAACTTTAAAATTTC-ATGAAAA--TTGTTATTATATTATATCTTCTTTGTATTAGT 1347
|||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||
Sbjct 1253 TCCAAACTTTTAAATTTCCATAAAAAAATTGTTATTATATTATATTTTCTTTGTATTAGT 1312
Query 1348 TCAGATTATTGGAAGGTAGGAATTTGT---GGTGGATGAAAAAATGTGAACAAAAAAGAA 1404
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1313 TCAGATTATTGGGAGGTAGGAATTTCTTCTGGTGGATGAAAAAATGTGAACAAAAAAGAA 1372
Query 1405 TTTTGTTTTTCTCAATCAATTACACTAACTATTCCAACT 1443
||||||||||| |||||||||||||||||||||||||||
Sbjct 1373 TTTTGTTTTTCCCAATCAATTACACTAACTATTCCAACT 1411
Score = 302 bits (163), Expect = 6e-81
Identities = 218/241 (90%), Gaps = 18/241 (7%)
Strand=Plus/Plus
Query 1 TCTCCTCTCACATGGTCATcaaaagccaaagccaaagccaaaaaaaacaaagaacccaga 60
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 TCTCCTCTCACATGGTCATC---A---AAAGCCAAAGCC-AAAAAAACAAAGAACCCAGA 53
Query 61 aacctagaagacagaaacaaaaaTCAAAGCTTTACTGAGCCACCAAGCAACCAATTACAT 120
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 54 AACCTAGAAGACAGACACAAAAATTAAAGCTTTACTGAGCCACCAAGCAACCAATTACA- 112
Query 121 CAA-CTCTAAAACCCATAAAACCAA--CAC----A-AA-GATTCCATCTTTCAATATCTC 171
||| ||| ||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 113 CAAACTCAAAAACCCATAAAACCAAAACACTCCCACAAAGATTCCATCTTTCAATATCTC 172
Query 172 TACAATGAGAAAGCCAATGCTTTGATTTTTTCCCCCAATCTTTCTTCCAAGATACCTCAA 231
|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 173 TACAATGAGAAAGCCAATGCTTTGATTTTT-CCCCCAATCTTTCTTCCAACAAACCTCAA 231
Query 232 A 232
|
Sbjct 232 A 232
> Ahg901152 jgi|Araly1|901152|Al_scaffold_0004_1802
Length=915
Score = 767 bits (415), Expect = 0.0
Identities = 756/913 (83%), Gaps = 54/913 (6%)
Strand=Plus/Plus
Query 304 CATCATGATGATGTGTCTACTGTTTC-CAGATCTCAATGTCGTAGTAAAATCTG-CTACA 361
|||||| || ||| | || ||| ||| |||||||||| | | || |||||| | || ||
Sbjct 39 CATCATCATCATG-G-CT-CTG-TTCTCAGATCTCAA-G-C-AAGCAAAATC-GTCTTCA 90
Query 362 ACGGAATACAC-AACCTTAATCTACAAAGGATGTGCAAGACAACA-ATTCTCAGATCCAT 419
| || ||||| |||| ||||||||||||| |||||||||| | | ||| ||||||||||
Sbjct 91 CCAGAGTACACAAACC-TAATCTACAAAGGTTGTGCAAGAC-AGAGATTATCAGATCCAT 148
Query 420 CTGGTTTATACTCACAAGCTCTCTCTGCTATGT-TCGGCTCATTGGTCTCTCAGTCTACT 478
|||||||||||||||||||||||||||| |||| | |||| |||||| ||||| || ||
Sbjct 149 CTGGTTTATACTCACAAGCTCTCTCTGCAATGTAT-GGCTTATTGGTTTCTCAATCAACG 207
Query 479 AAAACCAGATTCTACAAGACCACAACAGGAAC-A-A-GCACAACCA--CAATCACTGGTC 533
||||| ||||||||||| |||||||| ||||| | | || ||| || | |||||||||
Sbjct 208 AAAACAAGATTCTACAAAACCACAACTGGAACCACAAGC-CAAACAAGCG-TCACTGGTC 265
Query 534 TGTTCCAGTGTAGAGGAGATTTAAGTAACCATGACTGTTACAACTGTGTTAGTCGTCTTC 593
| ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 266 TTTTCCAGTGTAGAGGAGATTTAAGTAACAACGATTGTTACAACTGTGTTAGTCGTCTTC 325
Query 594 CTGTTCTCTCCGACAAGCTATGTGGCAAAACCATTGCTTCAAGAGTTCAACTTTCCGGCT 653
|||||||||| | ||||| || |||||||||||||| | || ||||| || |||||||
Sbjct 326 CTGTTCTCTCTGGTAAGCTCTGCGGCAAAACCATTGCCGCTAGGGTTCAGCTCTCCGGCT 385
Query 654 GTTATCTTCTCTATGAAGTTTCTGGCTTTTCTCAAATTTCAGGGATGGAGATGCTGTTCA 713
|||| |||||||||||| | ||||||||| | ||||||||||| |||||| || | ||||
Sbjct 386 GTTACCTTCTCTATGAAATCTCTGGCTTTGCCCAAATTTCAGGAATGGAGTTGTTATTCA 445
Query 714 AGACTTGTGGGAAGAACAACATCGCCGGAACAGGGTTCGAAG-AGAGAAGAGACACGGCG 772
|||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||| |||
Sbjct 446 AGACATGTGGGAAGAACAACGTCGCCGGAACAGGATTCGA-GCAGAGAAGAGACACAGCG 504
Query 773 TTCGGGGTGATGCAAAACGGCGTAGTATCA-GGCCATGGATTCTACGCTACTACGTACGA 831
|||||||| |||||||||||||| || ||| || || || |||||||| || || |||||
Sbjct 505 TTCGGGGTAATGCAAAACGGCGTCGT-TCAAGGACACGGCTTCTACGCGACGACATACGA 563
Query 832 ATCTGTCTACGTTTTAGGACAATGCGAAGGAGATGTCGGAGACACCGATTGTAGCGGATG 891
||| || ||||||||||||||||||||||| ||| | || || | ||||||||||| ||
Sbjct 564 ATCGGTTTACGTTTTAGGACAATGCGAAGGCGATTTAGGTGATTCAGATTGTAGCGGTTG 623
Query 892 TGTTAAGAACGCACTTG-AGAAAGCTCAGGTGGAATGTGGAAGCTCAATCTCCGGACAGA 950
| || ||||| || ||| |||||| || |||||||||||||||||||| || ||||
Sbjct 624 CATAAAAAACGCG-TTACAGAGAGCTCAAGTAGAATGTGGAAGCTCAATCTCTGGTCAGA 682
Query 951 TTTATCTACATAAGTGTTTCATCGCTTATAGTTAT-TACCCAAATGGTGTCCCCA-GAAG 1008
| ||||| ||||||||||| |||||||||||| | |||||||||||||| |||| || |
Sbjct 683 TATATCTTCATAAGTGTTTTGTCGCTTATAGTT-TCTACCCAAATGGTGTTCCCAAGAGG 741
Query 1009 atcttcttcttcttcatcttcg-tctt-catcctccagttctggctcttcaaattcagat 1066
|||||| | ||| ||| | | ||| | || || | ||| | ||||| ||| |
Sbjct 742 -TCTTCT-C--CTT-ATCCTAGCTCTGGC-TCTTCGACTTC-G--TCTTC---TTCT--T 787
Query 1067 ccttccACTTCTA-CAGGAGCAACAGGGAAGACGGTGGCAATAATAGTAGGAGGAGCAGC 1125
| ||| ||| | ||||| ||||||| || |||||||||||||||||||||||| ||||
Sbjct 788 C-TTC---TTC-AGCAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACAGC 842
Query 1126 TGGTGTTGGCTTTCTTGTCATTTGCTTGCTTTTTGCCAAAAACTTGATGAGGAAGAAACA 1185
||||||||| ||||||||||||||||| ||||| | |||||||||||||| ||||||| |
Sbjct 843 TGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAATA 902
Query 1186 TGACGACTATTGA 1198
|||||| ||||||
Sbjct 903 TGACGATTATTGA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5