BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04530.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470433 jgi|Araly1|470433|fgenesh2_kg.1__387__AT1G04530.1 1685 0.0
> Ahg470433 jgi|Araly1|470433|fgenesh2_kg.1__387__AT1G04530.1
Length=1286
Score = 1685 bits (912), Expect = 0.0
Identities = 1046/1110 (94%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 5 TCTTCGTTTGGTCGTTGTCTTGGGGTCCTCCGAATCAAGAACCCACAAATAACAATCGAG 64
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1 TCTTCGTTCGGTCGTTGTCTTGGGGTCCTCCGAATCAA-AACCCACAAATAACACTCGAG 59
Query 65 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGGACGGATTTAGAAA 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGAACGGATTTAGAAA 119
Query 125 GAAAGACCCAAAAAGATGCTGAAGAGCGAGGCATCTCTCTCGATTTACTGCGACTCTGGA 184
|||| || |||||||||||||||||||||||| |||||||||| ||||||||| || |||
Sbjct 120 GAAAAACACAAAAAGATGCTGAAGAGCGAGGCCTCTCTCTCGAGTTACTGCGATTCCGGA 179
Query 185 GATGGGTTCAAATCCGAAGATCCGGTGACTGGAATCGAGGAGAATTTGGAGAGAACGGTT 244
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 180 GATGGGTTCAAATCCGAAGATCCGTTGACTGGAATCGAGGAGAATTTGGAGAGAACCGTT 239
Query 245 ACGATTGGTGATGCTATTGACGGCGGCGAGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 304
|||||||| ||| |||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 240 ACGATTGGCGATTCTATCGACGGCGACGGGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 299
Query 305 AGTGGTGAAGGTGAGAGAGGTGTTTTTGAAGAGGTTATTAAGAAGCTTGGGATTGGTGTG 364
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 300 AGCAGTGAAGGTGAGAGAGGTGTTTTGGAAGAGGTTATTAAGAAGCTAGGGATTGGTAAG 359
Query 365 AGAGATGAACTAGGTTTTGAGATTGAAAGACCACCAAGCCCTCCTATGCATTTAGCTGCA 424
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 AGAGATGAACAAGGTTTTGAGATTGAAAGACCACCAAGTCCTCCTATGCATTTAGCTGCA 419
Query 425 GGGTTAGGAATTGATAAGTTTGATTTGTATGGTAGTGAGATC-AAATTCGATTTGCCGGG 483
|||||||| ||||||||||||||||||||||||| ||||| | |||||||| || |||||
Sbjct 420 GGGTTAGGTATTGATAAGTTTGATTTGTATGGTAATGAGA-CGAAATTCGACTTACCGGG 478
Query 484 TTACGATGATAAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 543
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTCGATGATGAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 538
Query 544 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 598
Query 604 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTAGTGATGGAGTAGCTTTAGCAAA 663
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTTGTGATGGAGTAGCTTTAGCAAA 658
Query 664 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 718
Query 724 ACGTGCAGTTCAAGCATCTCCTGATGATAGCATTGTTCTTGCAGCATATGCTAGTTTCCT 783
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 719 ACGTGCAGTTCAAGCTTCTCCTGATGATAGCAATGTTCTTGGAGCATATGCTAGTTTCCT 778
Query 784 CTGGGAGATAAACGCGgatgatgatgatgaggatgatgatgaggatgatgatgaGTCTTC 843
|||||||||||||| |||||| || ||||||||||||||||| |||||| | |||||
Sbjct 779 CTGGGAGATAAACGTGGATGACGACGATGAGGATGATGATGA---TGATGA-G--TCTTC 832
Query 844 TGGACAAGGAAAAGACGAATTTGAGGCTGATGCAGCGG-GAAAAGGCAAATCAAGCTTGT 902
||| ||||||||||| ||||||||| |||||||||||| |||||| ||| || |||||||
Sbjct 833 TGGGCAAGGAAAAGAAGAATTTGAGCCTGATGCAGCGGAGAAAAG-CAACTCGAGCTTGT 891
Query 903 CCAAGACAGAAGATGGAGAAACGCTATGCAGATACGCGAAGGCGTTCTGGAGTATTAATA 962
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 892 CCAAGACAGATGATGGAGAAACGCTATGCAGATACGCGAAAGCGTTCTGGAGTATAAATA 951
Query 963 ATGACCATGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGATA 1022
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 952 ATGACCACGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGACA 1011
Query 1023 GCATTATTCTTGGAGAGTACGCTCGGTTCTTATGGGAAATAGATGAATGACCATCAAGAA 1082
||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| |||||
Sbjct 1012 GCATTATTCTTGGAGAGTATGCTCGGTTTTTATGGGAAATAGAAGAATGATCATTAAGAA 1071
Query 1083 GAGAA-GAAGATGTCTATAGCTGAGGTAAA 1111
||||| ||||||||||||||||||||||||
Sbjct 1072 GAGAAAGAAGATGTCTATAGCTGAGGTAAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5