BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04540.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470434 jgi|Araly1|470434|fgenesh2_kg.1__388__AT1G04540.1 1557 0.0
> Ahg470434 jgi|Araly1|470434|fgenesh2_kg.1__388__AT1G04540.1
Length=1734
Score = 1557 bits (843), Expect = 0.0
Identities = 1021/1107 (92%), Gaps = 12/1107 (1%)
Strand=Plus/Plus
Query 1 ATGTCGATGATGTTCCCATCGTTTCAGTTGCTAGAACTTAACATAATATCAGCTCAGGAC 60
||||||||| |||||||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct 1 ATGTCGATGTTGTTCCCATCATTTCAGTTGCTAGAGCTGAACATAATCTCAGCTCAGGAC 60
Query 61 TTGGCTCCCGTCGCACGCAAGACAAAGACTTATGCGGTTGCTTGGGTTCATTCCGAACGT 120
|||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 61 TTGGCTCCTGTCGCTCGCAAAACAAAGACTTATGCTGTCGCTTGGGTTCATTCCGAGCGT 120
Query 121 AAACTTACCACCCGTGTCGACTATAATGGCGGAACAAACCCAACTTGGAACGACAAATTC 180
|||||||| || ||||||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct 121 AAACTTACTACACGTGTCGACTACAATGGTGGAACGAACCCAACTTGGAATGACAAATTC 180
Query 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCTGATACTTCAGCAGTGGTTATCGAAATA 240
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 181 GTATTCAGAGTCAACGAAGAATTTCTCTACGCCGATACTTCAGCTGTGGTTATTGAAATT 240
Query 241 TACGCCTTGCATTGGTTCAGAGATGTTCATGTAGGAACAGTTCGTGTCCTCATTAGCAAC 300
|||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 241 TACGCCTTGCATTGGTTCCGAGATGTTCATGTAGGAACAGTTCGTGTCCTCGTCAGCAAT 300
Query 301 CTCATTCCTCCTAATCGCCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGTACC 360
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CTCATTCCCCCTAATCGTCGTCCAGGATACAGAACCAGCAACAATGAATATCGTCGCACC 360
Query 361 CCACCTCCAGGAATGAGATTTGTTGCGCTTCAAGTTCGTCGTACTTCAGGTCGACCTCAG 420
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 361 CCACCTCCAGGAATGAGATTTGTCGCACTTCAGGTTCGTCGTACTTCAGGTCGACCTCAG 420
Query 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGATTTTGAACATTGGTGTTGGATTAATTGATGGTTCTATGCGGAGTATGCCGCTTTAT 480
Query 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGCATATGGATTCATCTGCTGTGGGATATAGAGATTTGCTCGGAGAAGAAGATCATCAT 540
Query 541 CTACAACATTTGCATTTAAATAGCAACAAAGGGAGCTCAAAGAATCCACAATCTCCATCT 600
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 541 CTGCAACATTTGCATTTAAATAGCAACAAAGGCAGCTCAAAGAATCCACAATCTCCGTCT 600
Query 601 TCTCGACAGTACCAATCCGTAATCTCAAGGCCTGAGCTCCGTCGTACGAAGAGCGATACA 660
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 601 TCTCGACAATACCAATCCGTAATCTCAAGACCTGAGCTCCGTCGTACGAAGAGCGATTCA 660
Query 661 AGTTCTATGGTTGTTTCGGATCTTCTTAGCAGGGCTGAACGGAGTCGTTTAGCTAATAGA 720
||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| |||
Sbjct 661 AGTTCTATGGTTGTTTCAGATCTTCTTAGTAGAGCTGAACGAAGTCGTTTAGCTAACAGA 720
Query 721 CAACCAGCGAGTGCAATAGTGAGCAGTGAATCTGAAACTCTTCCCACCACGACAGATTCT 780
|||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 721 AAACCGGCGAGTGCATTAGTGAGCAGTGACTCTGAAACTCTACCCACCACGACGGATTCT 780
Query 781 GATGAGAAAAAA-TCGAGTGAGTATACACCTCCTAGTAAAAACCTTAGAG-TTCCAAGGC 838
|||||||||||| | || |||||| | ||||||||||||||||| || || |||||||||
Sbjct 781 GATGAGAAAAAAAT-GAATGAGTACATACCTCCTAGTAAAAACCCTA-AGGTTCCAAGGC 838
Query 839 AACGATACAATTCGATTGAATCAGATCTCATAAATCCGTCGCCAATGGAGAA-CCACCAT 897
||||||||||||||||||| |||||||||||| || |||||||||||||||| || ||||
Sbjct 839 AACGATACAATTCGATTGATTCAGATCTCATAGATTCGTCGCCAATGGAGAAACC-CCAT 897
Query 898 GTGGT-AGTGTC-GAGAAGGGAGAGACATGATGTTATGCCGTATAGTTCGTATCAACAAA 955
||||| | || | ||||| ||||| || |||||||||||||||| ||||||||| |||
Sbjct 898 GTGGTGA-TG-CAGAGAAAAGAGAGGCACGATGTTATGCCGTATAATTCGTATCATCAAT 955
Query 956 CAGGTAAGACACCGAGGAAGAAGACAAGG-ATCGAGAAACAAAGATCAGTGAAAGATTAC 1014
|| ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 956 CACGTAAGACACCGAGAAAGAAGACAATGTA-CGAGAAACAAAGATCAGTGAAAGATTAC 1014
Query 1015 GATCGTGGCCGAGCTTCCCCGTACTTATCGAAGCACGGAACACCATTGAGATCAAACATT 1074
|||||||||||| |||| ||||||||||||| | |||||||||| |||||||| |||||
Sbjct 1015 GATCGTGGCCGAACTTCACCGTACTTATCGAGGAACGGAACACCGTTGAGATCGAACATC 1074
Query 1075 ATCGCATCTACTCCGATGAGATCTAAC 1101
|||||||||||||| |||||||| |||
Sbjct 1075 ATCGCATCTACTCCTATGAGATCGAAC 1101
Score = 948 bits (513), Expect = 0.0
Identities = 582/616 (94%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 1192 ATGCGGTCTAACATGGTTGGTTCGACTCCAATGAGATCAAACATCGTCGGATCAACCCCG 1251
|||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 1120 ATGCGGTCCAACATGGTTGGTTCGACTCCGAGGAGATCAAACATCGTCGGATCTACCCCG 1179
Query 1252 ATCCGATCAAACTACATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1311
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ATCCGTTCAAACTATATGGCTACACCGATGAGAACTCATCACGATTTTGGTACACCAGTG 1239
Query 1312 AGGAATTTAGCTGGAAGACGAATCTTAACTGAATCGGAGTTAGGACCATCGCCATCTGAA 1371
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1240 AGGAATTTAGCTGGAAGACGAATCCTAACTGAATCGGAGTTAGGTCCATCGCCATCTGAA 1299
Query 1372 GTGGCTGACAAATTGGCGAAAGATAGATCGCACGAAACGGAAAGTTCAATACTCAGCGAA 1431
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1300 GTGGCTGACAAATTGGCAAAAGATAGATCGCACGAAACAGAAAGTTCAATACTCAGCGAA 1359
Query 1432 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGATCAAAACTCGAGAGATGGCGAACA 1491
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1360 TGGAGCATCGATGAATCTAGCATCGAAGGATTGCGTTCAAAACTCGAGAGATGGCGAACA 1419
Query 1492 GAGCTTCCACCGTTGTACGACATAGGATCAAGCCATATAAGTAGCA-CTGATTACGATGG 1550
||||||||||| || |||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1420 GAGCTTCCACCATTATACGACATAGGATCAAGCCACATAAGTAGCAGCA-ATTACGATGG 1478
Query 1551 CGCGAGCGTTCCAGCTGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1610
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TGCAAGTGTTCCCGCCGCAACTGCCGGGGGAGGAATGAGTTCAAGACGGAAAACTCCGAC 1538
Query 1611 GACGAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1670
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGCAAAAAAGCATAACCGCCGTCACACAGATGGAGGTAATGGACTTTTCTCGTGTTTTAG 1598
Query 1671 TAAGATTTGTGGTGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGGCCGATGGTCTC 1730
||||||||| || ||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1599 TAAGATTTGCGGCGTGGAATGCAGTTTCGTATGCGGTGGTGGTGGTGGTCAAATGGCCTC 1658
Query 1731 AGAAGGATCTACTAAGAAAGGTGGAGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1790
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1659 TGAAGGATCTACCAAGAAAGGTGGGGCCGGACGTGTGCAACGCACATATTCCGCTGACGA 1718
Query 1791 TCTGAGCTTTGTGTGA 1806
| ||||||||||||||
Sbjct 1719 TTTGAGCTTTGTGTGA 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5