BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G04555.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470437 jgi|Araly1|470437|fgenesh2_kg.1__391__AT1G04555.1 846 0.0
> Ahg470437 jgi|Araly1|470437|fgenesh2_kg.1__391__AT1G04555.1
Length=840
Score = 846 bits (458), Expect = 0.0
Identities = 679/775 (88%), Gaps = 57/775 (7%)
Strand=Plus/Plus
Query 172 TTTGGAA-TAAGATAATGGATCATCAATGGCGCATGAGGTTTTCGTTCAAGAACGCAACA 230
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 112 TTTGGAAGT-GGATAATGGATCATCAATGGCGTATGAGGTTTTCGTTCAAGAACGCCACA 170
Query 231 ATTGCTCTCACTGTCATCAACGttctcatcttcctcttcctccttcagggctttttcact 290
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 ATTGCTCTCACAGTCGTCAACGTTCTCATCTTCCTCTTCCTCCTTCAGGGCTTTTTCACT 230
Query 291 tcctcctc-ttctccatcttcttcttcttcttctcGCCGACTCATTTCAGCTCAGCTTCG 349
|| || || | || ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 231 TCATCATCATCCT-CATCTTCTTCTTCCTCCTCTCGCCGACTCATTTCAGCTCAGCTTCG 289
Query 350 GTATATCAAGGAAGCCGAAGA-ACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAA 408
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | ||
Sbjct 290 GTATATCAAGGAAGCTGAAGAGA-TTAGGCTCAAGATGCAACCTTTAGAGCTCATTAAAA 348
Query 409 GAGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAGAAAGATG 468
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAGTCCGAGAAATCGAACAGGAGGCATCTGCGGGACAAGAAACCGAGCAGCAGAAAGATG 408
Query 469 TGAAGCAGACTACAGCCGTTGATCTCTCTAAACGACTGAAGGATTTCCGTGCGCTAAACG 528
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 409 TGAAGCAGACTACAGCCGTTGATCTCTCTAAACGGCTCAAGGATTTCCGTGCGCTAAACG 468
Query 529 ATGCATCGAGCTTGAAAGCATTGGAAGAATGGCGAAAGCGGAAAATGGAACGAGCAAGAC 588
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATGCATCAAGTTTGAAAGCATTGGAAGAATGGCGAAAGCGGAAAATGGAACGAGCAAGAC 528
Query 589 AACGGGATCTTGAGAAAACCGGAGGAGTTTCTTCGTCCACCAAAACATCATCATAAACGT 648
|||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 529 AACGGGATCTTGGGAAAACCGGAGGAGTTTC---GTCCATCAAAACATCATCATAA---T 582
Query 649 CACTAATTCTCTAAATATCATAAAATTATTGAACATTA-TAAGTCTCATAGAAAAAATTA 707
| | | |||| || || || ||||||| ||||||||||| ||| ||| |
Sbjct 583 -A-T----CG-TAAA-AT--TA---TT---GAACATTTGTAAGTCTCATA-AAAGAATCA 625
Query 708 TACTTACTAGTGTAAAGACAGACAGAGATGCTGGAAACCTGTCAAAACACAGGAAAAGAA 767
|||| | ||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 626 TACT-A---GTGTAAAGACAGACAGA-ATGCTGGAAAC-----A---CA--GGAAAAGAA 670
Query 768 AAGAAAGGATATGTA-TGTTACTCA-GTAAGATTTTTAA--ACACA-CTTGTGTTTTGGT 822
||||| ||| || | | |||| || ||||||||||| | ||||| || || |||||||
Sbjct 671 AAGAA-GGAAATCAAATTTTAC-CAAGTAAGATTTTTCATCACACAACT-GTTTTTTGGT 727
Query 823 CAATTCATCAAATATACCTTAATCATATAGTCTGGTGC-CCAGTGCAGCTC-AAGTTTAT 880
||||||||| |||| |||| ||| ||||||||||||| || ||||||| || |||||
Sbjct 728 CAATTCATCCAATA-ACCTCAATTATATAGTCTGGTGTGCCTCCGCAGCTCCAA-TTTAT 785
Query 881 GGTCATCACCATTGTGGCCTGTATCAGTCATCTTTATTACATAAATTTGATTCAT 935
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 786 GGTCATCACCATTGTGGCCGGTATCAGTCATCTTTATTACATAACTTTGATTCAT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5